Wall clock time and date at job start Mon Mar 30 2020 03:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38212 * 120.40867 * 2 1 4 4 C 1.39575 * 118.32875 * 179.97438 * 3 2 1 5 5 N 1.38785 * 120.53238 * 179.97438 * 4 3 2 6 6 C 1.34772 * 120.00318 * 185.08293 * 5 4 3 7 7 O 1.21704 * 120.00064 * 355.18316 * 6 5 4 8 8 C 1.46243 * 120.00096 * 175.18362 * 6 5 4 9 9 H 1.07997 * 120.00018 * 0.02562 * 8 6 5 10 10 C 1.40108 * 120.00101 * 179.97438 * 8 6 5 11 11 N 1.30647 * 119.99912 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 120.00242 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46665 * 90.00048 * 12 10 8 14 14 H 1.48497 * 109.47301 * 210.00302 * 12 10 8 15 15 H 1.48500 * 109.46755 * 330.00316 * 12 10 8 16 16 N 1.32977 * 118.94342 * 0.25540 * 4 3 2 17 17 C 1.31732 * 120.69203 * 359.48259 * 16 4 3 18 18 C 1.50703 * 119.07705 * 180.24620 * 17 16 4 19 19 N 1.31814 * 121.84037 * 0.53250 * 17 16 4 20 20 H 1.09000 * 109.46755 * 89.99778 * 1 2 3 21 21 H 1.08999 * 109.47324 * 210.00063 * 1 2 3 22 22 H 1.08995 * 109.46746 * 329.99928 * 1 2 3 23 23 H 1.08003 * 120.83042 * 359.95529 * 3 2 1 24 24 H 0.97003 * 119.99811 * 5.34997 * 5 4 3 25 25 H 0.96999 * 120.00172 * 179.97438 * 11 10 8 26 26 H 1.09007 * 109.46982 * 270.27802 * 18 17 16 27 27 H 1.08999 * 109.47057 * 30.27996 * 18 17 16 28 28 H 1.08994 * 109.46708 * 150.28222 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.1920 0.0000 4 6 3.6014 1.1413 0.0005 5 7 4.3494 2.3104 0.0000 6 6 5.6919 2.2514 -0.1028 7 8 6.2551 1.1726 -0.1070 8 6 6.4719 3.4839 -0.2095 9 1 5.9722 4.4412 -0.2054 10 6 7.8676 3.4226 -0.3159 11 7 8.4722 2.2644 -0.3203 12 14 8.8640 4.9968 -0.4528 13 1 9.2366 5.4664 0.9058 14 1 10.0949 4.7365 -1.2416 15 1 8.0523 6.0388 -1.1315 16 7 4.2023 -0.0449 -0.0041 17 6 3.4956 -1.1566 0.0010 18 6 4.2143 -2.4813 0.0011 19 7 2.1776 -1.1428 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3632 0.8900 0.5138 23 1 1.6870 2.1388 -0.0007 24 1 3.9062 3.1697 0.0776 25 1 9.4384 2.2220 -0.3944 26 1 4.3879 -2.8005 -1.0266 27 1 5.1696 -2.3764 0.5153 28 1 3.6050 -3.2251 0.5145 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000138814278.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:46 Heat of formation + Delta-G solvation = -15.423731 kcal Electronic energy + Delta-G solvation = -14432.935618 eV Core-core repulsion = 11869.091681 eV Total energy + Delta-G solvation = -2563.843938 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.00818 -39.52096 -36.03265 -35.17934 -34.59826 -32.63304 -29.97282 -29.11261 -28.33551 -24.26806 -23.23722 -21.77584 -19.78669 -18.23395 -17.77329 -17.15486 -16.43471 -16.25740 -15.78011 -15.19054 -14.94578 -14.52533 -14.16619 -13.76358 -13.33364 -13.26568 -13.16246 -12.99120 -12.78989 -12.73827 -12.04133 -11.88328 -11.58959 -10.96686 -10.58364 -10.44257 -9.49735 -9.40381 -8.35745 -6.97507 0.08224 0.36823 1.39624 1.41690 1.57093 2.15660 2.38206 2.48541 2.92289 3.15113 3.40677 3.59856 3.93134 4.23277 4.37673 4.50451 4.68605 4.73289 4.83443 4.92650 4.97795 5.20059 5.23853 5.51510 5.61507 5.96650 6.07956 6.32251 6.75536 7.10415 7.53478 8.35931 8.56185 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.049709 B = 0.007116 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.140217 B = 3934.039083 C = 4473.562106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.182 3.818 3 C -0.287 4.287 4 C 0.395 3.605 5 N -0.660 5.660 6 C 0.512 3.488 7 O -0.559 6.559 8 C -0.563 4.563 9 H 0.098 0.902 10 C 0.027 3.973 11 N -0.814 5.814 12 Si 1.005 2.995 13 H -0.261 1.261 14 H -0.274 1.274 15 H -0.246 1.246 16 N -0.565 5.565 17 C 0.321 3.679 18 C -0.074 4.074 19 N -0.568 5.568 20 H 0.098 0.902 21 H 0.084 0.916 22 H 0.103 0.897 23 H 0.176 0.824 24 H 0.419 0.581 25 H 0.278 0.722 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.606 0.668 0.356 12.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.038 3.962 3 C -0.314 4.314 4 C 0.154 3.846 5 N -0.306 5.306 6 C 0.317 3.683 7 O -0.439 6.439 8 C -0.598 4.598 9 H 0.116 0.884 10 C -0.189 4.189 11 N -0.443 5.443 12 Si 0.824 3.176 13 H -0.185 1.185 14 H -0.199 1.199 15 H -0.169 1.169 16 N -0.289 5.289 17 C 0.052 3.948 18 C -0.132 4.132 19 N -0.289 5.289 20 H 0.116 0.884 21 H 0.103 0.897 22 H 0.121 0.879 23 H 0.194 0.806 24 H 0.257 0.743 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.455 -0.943 0.318 11.498 hybrid contribution 0.278 1.650 -0.024 1.674 sum -11.177 0.707 0.294 11.203 Atomic orbital electron populations 1.20819 0.84254 1.05101 1.04687 1.22208 0.99322 0.86930 0.87720 1.22332 0.91698 1.02746 1.14593 1.19457 0.89565 0.87338 0.88213 1.44134 1.08229 1.06123 1.72081 1.19079 0.79824 0.91445 0.77974 1.90701 1.69093 1.31784 1.52304 1.21421 0.92385 0.92332 1.53712 0.88447 1.27050 0.99177 1.01409 0.91265 1.70167 1.10714 1.28430 1.34968 0.84905 0.77047 0.76305 0.79368 1.18514 1.19882 1.16883 1.68455 1.41838 0.98424 1.20181 1.23724 0.87149 0.94861 0.89065 1.20525 0.99407 0.89129 1.04148 1.68156 1.08841 1.30958 1.20912 0.88410 0.89681 0.87860 0.80636 0.74283 0.91208 0.89162 0.91313 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 10.22 71.24 0.73 -0.95 15 2 C 0.18 5.63 6.82 42.45 0.29 5.92 15 3 C -0.29 -9.52 9.72 22.59 0.22 -9.30 15 4 C 0.39 17.80 7.45 133.07 0.99 18.79 15 5 N -0.66 -30.72 5.37 -312.04 -1.68 -32.39 15 6 C 0.51 29.97 7.70 86.32 0.66 30.63 15 7 O -0.56 -37.92 13.32 -4.36 -0.06 -37.98 15 8 C -0.56 -31.06 9.54 24.81 0.24 -30.82 15 9 H 0.10 4.67 7.85 -2.91 -0.02 4.64 15 10 C 0.03 1.48 5.50 85.32 0.47 1.95 15 11 N -0.81 -49.22 11.83 21.85 0.26 -48.96 15 12 Si 1.01 39.67 29.56 68.60 2.03 41.70 15 13 H -0.26 -9.80 7.11 99.48 0.71 -9.09 15 14 H -0.27 -10.54 7.11 99.48 0.71 -9.83 15 15 H -0.25 -8.89 7.11 99.48 0.71 -8.19 15 16 N -0.57 -28.55 7.93 -185.29 -1.47 -30.02 15 17 C 0.32 13.45 7.64 138.76 1.06 14.51 15 18 C -0.07 -2.51 10.32 71.24 0.73 -1.77 15 19 N -0.57 -20.63 10.27 -176.23 -1.81 -22.44 15 20 H 0.10 1.50 8.14 -2.39 -0.02 1.48 15 21 H 0.08 1.48 8.14 -2.39 -0.02 1.46 15 22 H 0.10 1.35 8.09 -2.39 -0.02 1.33 15 23 H 0.18 4.20 8.06 -2.91 -0.02 4.18 15 24 H 0.42 15.47 8.70 -92.71 -0.81 14.66 15 25 H 0.28 15.19 8.29 -92.71 -0.77 14.42 15 26 H 0.09 2.81 8.14 -2.38 -0.02 2.79 15 27 H 0.07 2.54 8.14 -2.39 -0.02 2.52 15 28 H 0.11 2.89 8.14 -2.39 -0.02 2.87 15 Total: -1.00 -80.94 256.20 3.05 -77.89 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.38 Total: 23.26 kcal Atomic # 6 Polarization: 23.56 SS G_CDS: 5.39 Total: 28.95 kcal Atomic # 7 Polarization: -129.12 SS G_CDS: -4.70 Total: -133.82 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -0.06 Total: -37.98 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -80.94 3.05 -77.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138814278.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.467 kcal (2) G-P(sol) polarization free energy of solvation -80.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds