Wall clock time and date at job start Mon Mar 30 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00038 * 2 1 4 4 H 1.48502 * 109.47414 * 269.99909 * 3 2 1 5 5 H 1.48501 * 109.47386 * 30.00396 * 3 2 1 6 6 H 1.48499 * 109.47228 * 149.99911 * 3 2 1 7 7 C 1.37875 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00231 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00104 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.47328 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00119 * 179.97438 * 10 9 7 12 12 O 1.21572 * 119.99969 * 359.97438 * 11 10 9 13 13 C 1.47716 * 119.99844 * 179.97438 * 11 10 9 14 14 N 1.32892 * 119.80765 * 5.63511 * 13 11 10 15 15 C 1.31341 * 121.71333 * 180.02562 * 14 13 11 16 16 C 1.38826 * 121.12740 * 359.97438 * 15 14 13 17 17 C 1.38213 * 119.47372 * 359.97438 * 16 15 14 18 18 C 1.39585 * 118.42376 * 0.02562 * 17 16 15 19 19 N 1.38846 * 120.56316 * 179.97438 * 18 17 16 20 20 H 0.96999 * 120.00073 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47135 * 59.99529 * 9 7 2 22 22 H 1.09002 * 109.47130 * 299.99841 * 9 7 2 23 23 H 0.97004 * 120.00341 * 0.02562 * 10 9 7 24 24 H 1.08001 * 119.43581 * 179.72106 * 15 14 13 25 25 H 1.07998 * 120.26585 * 180.02562 * 16 15 14 26 26 H 1.07999 * 120.78170 * 180.02562 * 17 16 15 27 27 H 0.97008 * 119.99948 * 203.28196 * 19 18 17 28 28 H 0.97000 * 120.00008 * 23.29047 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 5.3250 -2.8216 -0.0020 12 8 6.1150 -1.8975 -0.0034 13 6 5.8173 -4.2143 -0.0013 14 7 4.9554 -5.2196 -0.1129 15 6 5.3519 -6.4718 -0.1161 16 6 6.6962 -6.7992 -0.0027 17 6 7.6341 -5.7908 0.1150 18 6 7.1903 -4.4674 0.1160 19 7 8.0940 -3.4197 0.2324 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6804 0.8888 22 1 3.8746 -0.6801 -0.8912 23 1 3.3695 -3.3126 -0.0010 24 1 4.6192 -7.2603 -0.2043 25 1 7.0068 -7.8335 -0.0072 26 1 8.6854 -6.0215 0.2040 27 1 7.7977 -2.5584 0.5660 28 1 9.0216 -3.5491 -0.0201 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157686368.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:19 Heat of formation + Delta-G solvation = 0.014579 kcal Electronic energy + Delta-G solvation = -14270.110452 eV Core-core repulsion = 11706.935970 eV Total energy + Delta-G solvation = -2563.174482 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.41240 -38.29493 -35.30949 -34.04140 -32.44171 -31.91437 -29.28570 -27.75057 -24.47675 -22.89108 -21.87354 -20.16559 -18.05308 -17.24638 -16.89679 -16.39176 -15.49551 -15.00618 -14.77681 -14.45825 -14.02306 -13.52397 -13.28586 -12.91159 -12.44819 -12.28128 -12.11228 -11.15575 -10.98589 -10.75680 -9.95767 -9.82967 -9.61938 -9.43945 -9.14781 -8.74633 -8.18715 -7.65444 -6.17109 -4.19057 0.90604 1.46115 3.19225 3.28897 3.35122 3.42728 3.82135 4.01627 4.16007 4.36117 4.59076 4.81893 4.99427 5.11436 5.17611 5.46045 5.61782 5.96298 6.08204 6.57911 6.81200 7.08165 7.19841 7.39838 7.45765 7.90052 7.96525 8.22561 8.58476 8.79180 8.94559 9.42394 10.94987 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.048567 B = 0.006734 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.384650 B = 4157.000431 C = 4714.947181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.082 0.918 9 C 0.218 3.782 10 N -0.679 5.679 11 C 0.563 3.437 12 O -0.565 6.565 13 C 0.003 3.997 14 N -0.417 5.417 15 C 0.036 3.964 16 C -0.108 4.108 17 C -0.167 4.167 18 C 0.222 3.778 19 N -0.852 5.852 20 H 0.267 0.733 21 H 0.027 0.973 22 H 0.023 0.977 23 H 0.408 0.592 24 H 0.157 0.843 25 H 0.135 0.865 26 H 0.135 0.865 27 H 0.418 0.582 28 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.909 -11.786 0.465 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.100 0.900 9 C 0.096 3.904 10 N -0.325 5.325 11 C 0.348 3.652 12 O -0.447 6.447 13 C -0.140 4.140 14 N -0.127 5.127 15 C -0.127 4.127 16 C -0.129 4.129 17 C -0.198 4.198 18 C 0.109 3.891 19 N -0.398 5.398 20 H 0.077 0.923 21 H 0.045 0.955 22 H 0.041 0.959 23 H 0.244 0.756 24 H 0.174 0.826 25 H 0.153 0.847 26 H 0.152 0.848 27 H 0.258 0.742 28 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 14.308 -10.684 0.410 17.861 hybrid contribution 1.178 0.437 0.035 1.257 sum 15.486 -10.247 0.446 18.574 Atomic orbital electron populations 1.69885 1.06187 1.27344 1.49532 1.24794 0.94797 0.99094 0.93954 0.86812 0.80538 0.83281 0.78988 1.19880 1.20927 1.18550 1.21108 0.88441 0.95376 1.53089 0.90044 1.19575 0.95487 0.78490 0.96874 1.46049 1.05532 1.11448 1.69501 1.17757 0.83588 0.86250 0.77609 1.90483 1.55339 1.44780 1.54054 1.20950 0.89208 0.93993 1.09844 1.67432 1.37975 1.00129 1.07189 1.22500 0.94440 0.92999 1.02797 1.22084 0.94097 0.99880 0.96843 1.21194 1.00594 0.90685 1.07281 1.18632 0.90046 0.89207 0.91222 1.42920 1.10117 1.14417 1.72310 0.92294 0.95483 0.95928 0.75604 0.82580 0.84734 0.84759 0.74239 0.77953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.96 55.43 0.77 -26.17 15 2 C 0.08 2.22 5.47 -17.82 -0.10 2.13 15 3 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 15 4 H -0.27 -6.65 7.11 56.52 0.40 -6.24 15 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 15 7 C -0.54 -15.37 9.83 -34.44 -0.34 -15.71 15 8 H 0.08 2.43 7.84 -52.48 -0.41 2.02 15 9 C 0.22 5.54 4.50 -5.20 -0.02 5.52 15 10 N -0.68 -15.19 5.54 -62.47 -0.35 -15.53 15 11 C 0.56 11.75 7.78 -12.39 -0.10 11.65 15 12 O -0.57 -12.49 13.77 5.30 0.07 -12.41 15 13 C 0.00 0.06 6.76 -82.84 -0.56 -0.50 15 14 N -0.42 -6.79 9.55 -9.67 -0.09 -6.88 15 15 C 0.04 0.45 11.17 -17.54 -0.20 0.25 15 16 C -0.11 -1.09 10.10 -39.37 -0.40 -1.48 15 17 C -0.17 -1.82 10.08 -39.09 -0.39 -2.22 15 18 C 0.22 3.18 6.78 -83.48 -0.57 2.61 15 19 N -0.85 -10.99 8.52 32.62 0.28 -10.71 15 20 H 0.27 7.53 8.31 -40.82 -0.34 7.19 15 21 H 0.03 0.71 7.20 -51.93 -0.37 0.34 15 22 H 0.02 0.59 7.57 -51.93 -0.39 0.20 15 23 H 0.41 8.73 7.66 -40.82 -0.31 8.42 15 24 H 0.16 1.46 8.06 -52.49 -0.42 1.04 15 25 H 0.13 0.86 8.06 -52.49 -0.42 0.44 15 26 H 0.13 1.05 8.06 -52.49 -0.42 0.63 15 27 H 0.42 6.31 6.04 -40.82 -0.25 6.06 15 28 H 0.39 3.66 8.91 -40.82 -0.36 3.30 15 LS Contribution 249.74 15.07 3.76 3.76 Total: -1.00 -32.33 249.74 -5.43 -37.75 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -2.54 Total: 10.95 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -2.67 Total: 2.25 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.61 Total: -59.29 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.41 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.33 -5.43 -37.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157686368.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.768 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds