Wall clock time and date at job start Mon Mar 30 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00038 * 2 1 4 4 H 1.48502 * 109.47414 * 269.99909 * 3 2 1 5 5 H 1.48501 * 109.47386 * 30.00396 * 3 2 1 6 6 H 1.48499 * 109.47228 * 149.99911 * 3 2 1 7 7 C 1.37875 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00231 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00104 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.47328 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00119 * 179.97438 * 10 9 7 12 12 O 1.21572 * 119.99969 * 359.97438 * 11 10 9 13 13 C 1.47716 * 119.99844 * 179.97438 * 11 10 9 14 14 N 1.32892 * 119.80765 * 5.63511 * 13 11 10 15 15 C 1.31341 * 121.71333 * 180.02562 * 14 13 11 16 16 C 1.38826 * 121.12740 * 359.97438 * 15 14 13 17 17 C 1.38213 * 119.47372 * 359.97438 * 16 15 14 18 18 C 1.39585 * 118.42376 * 0.02562 * 17 16 15 19 19 N 1.38846 * 120.56316 * 179.97438 * 18 17 16 20 20 H 0.96999 * 120.00073 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47135 * 59.99529 * 9 7 2 22 22 H 1.09002 * 109.47130 * 299.99841 * 9 7 2 23 23 H 0.97004 * 120.00341 * 0.02562 * 10 9 7 24 24 H 1.08001 * 119.43581 * 179.72106 * 15 14 13 25 25 H 1.07998 * 120.26585 * 180.02562 * 16 15 14 26 26 H 1.07999 * 120.78170 * 180.02562 * 17 16 15 27 27 H 0.97008 * 119.99948 * 203.28196 * 19 18 17 28 28 H 0.97000 * 120.00008 * 23.29047 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 5.3250 -2.8216 -0.0020 12 8 6.1150 -1.8975 -0.0034 13 6 5.8173 -4.2143 -0.0013 14 7 4.9554 -5.2196 -0.1129 15 6 5.3519 -6.4718 -0.1161 16 6 6.6962 -6.7992 -0.0027 17 6 7.6341 -5.7908 0.1150 18 6 7.1903 -4.4674 0.1160 19 7 8.0940 -3.4197 0.2324 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6804 0.8888 22 1 3.8746 -0.6801 -0.8912 23 1 3.3695 -3.3126 -0.0010 24 1 4.6192 -7.2603 -0.2043 25 1 7.0068 -7.8335 -0.0072 26 1 8.6854 -6.0215 0.2040 27 1 7.7977 -2.5584 0.5660 28 1 9.0216 -3.5491 -0.0201 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157686368.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:19 Heat of formation + Delta-G solvation = -26.386741 kcal Electronic energy + Delta-G solvation = -14271.255300 eV Core-core repulsion = 11706.935970 eV Total energy + Delta-G solvation = -2564.319329 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.58871 -39.75013 -36.63230 -35.67604 -34.38959 -33.05620 -30.58930 -29.49318 -25.78058 -24.19424 -23.41563 -21.77648 -19.65456 -18.46816 -18.20273 -17.77317 -17.00960 -16.59102 -16.32999 -15.69025 -15.61415 -14.87300 -14.75021 -14.35780 -14.00250 -13.94436 -13.35739 -13.07112 -12.70445 -12.18139 -11.92470 -11.69491 -11.17763 -10.92947 -10.56904 -10.36169 -9.98165 -8.73076 -8.40487 -6.48638 -0.15127 0.52213 1.33347 1.34046 1.47657 1.82623 2.27756 2.39469 2.93393 2.96418 3.01993 3.42871 3.92159 3.99095 4.20703 4.52258 4.65921 4.75022 4.99013 5.02034 5.21256 5.24227 5.45338 5.70756 6.05893 6.42949 6.51535 6.71591 6.86495 7.08012 7.15026 7.33532 8.74754 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.048567 B = 0.006734 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.384650 B = 4157.000431 C = 4714.947181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.025 3.975 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.551 4.551 8 H 0.052 0.948 9 C 0.232 3.768 10 N -0.690 5.690 11 C 0.559 3.441 12 O -0.586 6.586 13 C -0.046 4.046 14 N -0.451 5.451 15 C 0.031 3.969 16 C -0.084 4.084 17 C -0.157 4.157 18 C 0.216 3.784 19 N -0.849 5.849 20 H 0.273 0.727 21 H 0.019 0.981 22 H 0.016 0.984 23 H 0.410 0.590 24 H 0.184 0.816 25 H 0.185 0.815 26 H 0.174 0.826 27 H 0.408 0.592 28 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.372 -13.399 0.462 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.175 4.175 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.589 4.589 8 H 0.070 0.930 9 C 0.109 3.891 10 N -0.337 5.337 11 C 0.347 3.653 12 O -0.468 6.468 13 C -0.186 4.186 14 N -0.162 5.162 15 C -0.135 4.135 16 C -0.104 4.104 17 C -0.187 4.187 18 C 0.102 3.898 19 N -0.394 5.394 20 H 0.083 0.917 21 H 0.037 0.963 22 H 0.034 0.966 23 H 0.245 0.755 24 H 0.201 0.799 25 H 0.202 0.798 26 H 0.192 0.808 27 H 0.244 0.756 28 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 16.813 -12.306 0.400 20.839 hybrid contribution 0.456 0.698 0.040 0.835 sum 17.270 -11.607 0.441 20.813 Atomic orbital electron populations 1.69996 1.07809 1.28732 1.50496 1.25670 0.95643 1.02889 0.93337 0.85757 0.79264 0.78704 0.79543 1.18867 1.19580 1.18132 1.21280 0.90003 0.94567 1.53078 0.92959 1.19183 0.93475 0.80488 0.95997 1.45921 1.06626 1.10011 1.71189 1.18393 0.82525 0.88194 0.76181 1.90451 1.55518 1.46146 1.54721 1.20429 0.90802 0.92203 1.15134 1.67304 1.38907 1.01489 1.08489 1.23162 0.96664 0.92089 1.01592 1.22624 0.92630 1.02084 0.93086 1.21683 1.02814 0.88916 1.05284 1.18863 0.88984 0.90990 0.90916 1.42874 1.10923 1.13758 1.71805 0.91746 0.96298 0.96633 0.75459 0.79906 0.79812 0.80824 0.75557 0.75942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.46 13.96 21.45 0.30 -57.16 15 2 C 0.02 1.45 5.47 84.65 0.46 1.92 15 3 Si 0.94 45.10 27.47 68.60 1.88 46.99 15 4 H -0.26 -12.15 7.11 99.48 0.71 -11.44 15 5 H -0.27 -12.30 7.11 99.48 0.71 -11.60 15 6 H -0.26 -12.04 6.54 99.48 0.65 -11.39 15 7 C -0.55 -32.43 9.83 25.60 0.25 -32.18 15 8 H 0.05 3.29 7.84 -2.91 -0.02 3.27 15 9 C 0.23 12.17 4.50 85.63 0.38 12.56 15 10 N -0.69 -32.20 5.54 -469.83 -2.60 -34.80 15 11 C 0.56 24.03 7.78 86.75 0.67 24.71 15 12 O -0.59 -26.49 13.77 -3.94 -0.05 -26.55 15 13 C -0.05 -1.59 6.76 41.94 0.28 -1.31 15 14 N -0.45 -14.46 9.55 -184.52 -1.76 -16.22 15 15 C 0.03 0.67 11.17 84.91 0.95 1.61 15 16 C -0.08 -1.26 10.10 22.40 0.23 -1.04 15 17 C -0.16 -2.74 10.08 22.59 0.23 -2.51 15 18 C 0.22 5.81 6.78 38.81 0.26 6.07 15 19 N -0.85 -20.73 8.52 -50.72 -0.43 -21.16 15 20 H 0.27 15.58 8.31 -92.71 -0.77 14.81 15 21 H 0.02 1.02 7.20 -2.39 -0.02 1.01 15 22 H 0.02 0.84 7.57 -2.39 -0.02 0.82 15 23 H 0.41 18.53 7.66 -92.70 -0.71 17.82 15 24 H 0.18 2.80 8.06 -2.91 -0.02 2.78 15 25 H 0.18 1.02 8.06 -2.91 -0.02 1.00 15 26 H 0.17 1.67 8.06 -2.91 -0.02 1.64 15 27 H 0.41 12.22 6.04 -92.70 -0.56 11.65 15 28 H 0.41 6.73 8.91 -92.71 -0.83 5.90 15 Total: -1.00 -72.93 249.74 0.13 -72.80 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -0.93 Total: 26.28 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 3.72 Total: 9.83 kcal Atomic # 7 Polarization: -124.85 SS G_CDS: -4.50 Total: -129.35 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.05 Total: -26.55 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.99 kcal Total: -72.93 0.13 -72.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157686368.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.415 kcal (2) G-P(sol) polarization free energy of solvation -72.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds