Wall clock time and date at job start Mon Mar 30 2020 04:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47191 * 2 1 4 4 C 1.50700 * 109.47116 * 120.00556 * 2 1 3 5 5 H 1.07989 * 120.00347 * 119.99845 * 4 2 1 6 6 C 1.37883 * 119.99413 * 299.99445 * 4 2 1 7 7 N 1.31509 * 120.00469 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99452 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47367 * 60.00131 * 8 6 4 10 10 H 1.48505 * 109.46838 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47036 * 299.99593 * 8 6 4 12 12 N 1.46505 * 109.46616 * 240.00027 * 2 1 3 13 13 C 1.34773 * 120.00093 * 85.00437 * 12 2 1 14 14 O 1.21523 * 119.99939 * 359.97438 * 13 12 2 15 15 C 1.48135 * 120.00365 * 179.71953 * 13 12 2 16 16 C 1.40110 * 121.14795 * 179.97438 * 15 13 12 17 17 C 1.38501 * 117.82422 * 179.74224 * 16 15 13 18 18 N 1.31925 * 119.96676 * 0.54203 * 17 16 15 19 19 N 1.28280 * 122.51637 * 359.71856 * 18 17 16 20 20 C 1.31932 * 122.32337 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.46895 * 299.99497 * 1 2 3 22 22 H 1.08998 * 109.47131 * 59.99913 * 1 2 3 23 23 H 1.09002 * 109.46899 * 180.02562 * 1 2 3 24 24 H 0.97000 * 120.00320 * 179.97438 * 7 6 4 25 25 H 0.97000 * 119.99795 * 264.99551 * 12 2 1 26 26 H 1.07999 * 121.08514 * 359.97438 * 16 15 13 27 27 H 1.07998 * 120.01951 * 180.23908 * 17 16 15 28 28 H 1.08001 * 120.16618 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.8075 -1.1192 4.0076 10 1 1.8270 -0.4201 5.2204 11 1 1.8279 -2.5199 4.0080 12 7 2.0183 -0.6906 -1.1963 13 6 2.1470 -0.0183 -2.3572 14 8 1.8577 1.1607 -2.4118 15 6 2.6466 -0.7151 -3.5652 16 6 2.7892 -0.0396 -4.7845 17 6 3.2675 -0.7566 -5.8686 18 7 3.5616 -2.0357 -5.7348 19 7 3.4282 -2.6612 -4.6228 20 6 2.9866 -2.0698 -3.5293 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7083 1.1608 3.4844 25 1 2.2490 -1.6318 -1.1527 26 1 2.5381 1.0069 -4.8749 27 1 3.3950 -0.2702 -6.8244 28 1 2.8874 -2.6303 -2.6114 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158844262.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:24 Heat of formation + Delta-G solvation = 17.343393 kcal Electronic energy + Delta-G solvation = -14319.285352 eV Core-core repulsion = 11756.862304 eV Total energy + Delta-G solvation = -2562.423049 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.10877 -38.88416 -35.07354 -33.29808 -32.87211 -32.17584 -29.07590 -25.49869 -25.23839 -24.51369 -21.57938 -19.92697 -18.33170 -17.53954 -16.54269 -16.00872 -15.31502 -15.13093 -14.92762 -14.27321 -14.05207 -13.44694 -13.16370 -12.53796 -11.85440 -11.21739 -11.05608 -11.05095 -10.89980 -10.47005 -10.33428 -10.24048 -10.13209 -10.11502 -9.35449 -9.18497 -8.66778 -8.16026 -6.21765 -4.32176 0.37941 0.79303 3.06524 3.20943 3.26497 3.27173 3.61003 3.77662 4.00396 4.27381 4.33143 4.51770 4.81524 4.95995 5.11124 5.21106 5.69650 5.78318 6.03002 6.69247 6.81039 6.99698 7.20523 7.37141 7.56386 7.76331 8.01706 8.38979 8.55309 8.59658 8.82270 9.35355 10.84192 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.048898 B = 0.006507 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.482462 B = 4302.204058 C = 4690.033713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.053 0.947 4 C -0.539 4.539 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.693 5.693 13 C 0.544 3.456 14 O -0.539 6.539 15 C -0.118 4.118 16 C -0.067 4.067 17 C 0.035 3.965 18 N -0.239 5.239 19 N -0.246 5.246 20 C 0.067 3.933 21 H 0.093 0.907 22 H 0.015 0.985 23 H 0.029 0.971 24 H 0.266 0.734 25 H 0.390 0.610 26 H 0.162 0.838 27 H 0.177 0.823 28 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.467 -3.232 -10.415 11.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.071 0.929 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.340 5.340 13 C 0.327 3.673 14 O -0.417 6.417 15 C -0.133 4.133 16 C -0.097 4.097 17 C -0.129 4.129 18 N -0.081 5.081 19 N -0.087 5.087 20 C -0.097 4.097 21 H 0.112 0.888 22 H 0.035 0.965 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.224 0.776 26 H 0.179 0.821 27 H 0.194 0.806 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.701 -3.655 -10.949 11.855 hybrid contribution -0.148 0.470 1.584 1.658 sum 2.553 -3.185 -9.366 10.217 Atomic orbital electron populations 1.22098 0.98040 0.99406 1.01152 1.18884 0.91298 0.94100 0.79466 0.92946 1.21141 1.32947 1.13486 0.90156 0.91925 1.24880 0.94658 0.94904 0.99115 1.69878 1.35520 1.22325 1.24223 0.86468 0.79217 0.79607 0.81605 1.20090 1.21063 1.20050 1.46556 1.63609 1.13669 1.10209 1.17928 0.79615 0.86828 0.82972 1.90758 1.51093 1.15189 1.84659 1.21653 0.99499 0.95446 0.96707 1.22641 0.92963 1.02624 0.91437 1.24338 0.95854 0.92516 1.00203 1.72857 1.10501 1.08136 1.16628 1.73035 1.09949 1.30381 0.95336 1.24623 0.93091 0.92438 0.99582 0.88835 0.96544 0.95224 0.92352 0.77626 0.82056 0.80573 0.80619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.26 37.16 0.34 -3.19 15 2 C 0.26 6.40 2.56 -69.08 -0.18 6.23 15 3 H 0.05 1.47 7.58 -51.93 -0.39 1.07 15 4 C -0.54 -13.70 8.73 -34.44 -0.30 -14.01 15 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 15 7 N -0.88 -24.09 11.32 55.43 0.63 -23.46 15 8 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 15 9 H -0.28 -6.08 7.11 56.52 0.40 -5.67 15 10 H -0.29 -6.33 7.11 56.52 0.40 -5.93 15 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 12 N -0.69 -13.58 5.03 -55.78 -0.28 -13.86 15 13 C 0.54 10.30 7.77 -12.20 -0.09 10.20 15 14 O -0.54 -12.07 16.15 5.35 0.09 -11.98 15 15 C -0.12 -1.77 5.92 -104.58 -0.62 -2.39 15 16 C -0.07 -0.84 9.77 -38.78 -0.38 -1.22 15 17 C 0.03 0.39 11.30 -17.41 -0.20 0.19 15 18 N -0.24 -3.32 11.48 30.53 0.35 -2.97 15 19 N -0.25 -3.61 11.49 30.78 0.35 -3.26 15 20 C 0.07 0.92 10.84 -16.95 -0.18 0.74 15 21 H 0.09 2.43 6.07 -51.93 -0.32 2.11 15 22 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 15 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 24 H 0.27 6.92 8.31 -40.82 -0.34 6.59 15 25 H 0.39 6.44 6.69 -40.82 -0.27 6.17 15 26 H 0.16 1.83 7.80 -52.49 -0.41 1.42 15 27 H 0.18 1.23 8.06 -52.49 -0.42 0.81 15 28 H 0.18 1.99 6.53 -52.49 -0.34 1.64 15 LS Contribution 252.85 15.07 3.81 3.81 Total: -1.00 -30.26 252.85 -4.32 -34.58 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -2.54 Total: 3.89 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.70 Total: -1.77 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 1.05 Total: -43.56 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.26 -4.32 -34.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158844262.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.920 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds