Wall clock time and date at job start Mon Mar 30 2020 04:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47191 * 2 1 4 4 C 1.50700 * 109.47116 * 120.00556 * 2 1 3 5 5 H 1.07989 * 120.00347 * 119.99845 * 4 2 1 6 6 C 1.37883 * 119.99413 * 299.99445 * 4 2 1 7 7 N 1.31509 * 120.00469 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99452 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47367 * 60.00131 * 8 6 4 10 10 H 1.48505 * 109.46838 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47036 * 299.99593 * 8 6 4 12 12 N 1.46505 * 109.46616 * 240.00027 * 2 1 3 13 13 C 1.34773 * 120.00093 * 85.00437 * 12 2 1 14 14 O 1.21523 * 119.99939 * 359.97438 * 13 12 2 15 15 C 1.48135 * 120.00365 * 179.71953 * 13 12 2 16 16 C 1.40110 * 121.14795 * 179.97438 * 15 13 12 17 17 C 1.38501 * 117.82422 * 179.74224 * 16 15 13 18 18 N 1.31925 * 119.96676 * 0.54203 * 17 16 15 19 19 N 1.28280 * 122.51637 * 359.71856 * 18 17 16 20 20 C 1.31932 * 122.32337 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.46895 * 299.99497 * 1 2 3 22 22 H 1.08998 * 109.47131 * 59.99913 * 1 2 3 23 23 H 1.09002 * 109.46899 * 180.02562 * 1 2 3 24 24 H 0.97000 * 120.00320 * 179.97438 * 7 6 4 25 25 H 0.97000 * 119.99795 * 264.99551 * 12 2 1 26 26 H 1.07999 * 121.08514 * 359.97438 * 16 15 13 27 27 H 1.07998 * 120.01951 * 180.23908 * 17 16 15 28 28 H 1.08001 * 120.16618 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.8075 -1.1192 4.0076 10 1 1.8270 -0.4201 5.2204 11 1 1.8279 -2.5199 4.0080 12 7 2.0183 -0.6906 -1.1963 13 6 2.1470 -0.0183 -2.3572 14 8 1.8577 1.1607 -2.4118 15 6 2.6466 -0.7151 -3.5652 16 6 2.7892 -0.0396 -4.7845 17 6 3.2675 -0.7566 -5.8686 18 7 3.5616 -2.0357 -5.7348 19 7 3.4282 -2.6612 -4.6228 20 6 2.9866 -2.0698 -3.5293 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7083 1.1608 3.4844 25 1 2.2490 -1.6318 -1.1527 26 1 2.5381 1.0069 -4.8749 27 1 3.3950 -0.2702 -6.8244 28 1 2.8874 -2.6303 -2.6114 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158844262.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:24 Heat of formation + Delta-G solvation = -4.457190 kcal Electronic energy + Delta-G solvation = -14320.230697 eV Core-core repulsion = 11756.862304 eV Total energy + Delta-G solvation = -2563.368393 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.21601 -40.41768 -36.87215 -34.73440 -34.14012 -33.55666 -30.86948 -27.37683 -26.59756 -25.55924 -23.22713 -21.59106 -19.80563 -18.65958 -18.05216 -17.30087 -17.06288 -16.41626 -16.33190 -15.76090 -15.48253 -14.74817 -14.56112 -14.34250 -13.74632 -13.04435 -12.90948 -12.76413 -12.29466 -12.18120 -12.06586 -11.47360 -11.32749 -11.20566 -11.14267 -10.72108 -10.60537 -9.91260 -8.19332 -6.36934 -0.74974 -0.18619 1.46655 1.47827 1.55567 1.74059 2.13992 2.44787 2.59199 3.03783 3.11914 3.26545 3.52203 3.62260 3.83456 4.35127 4.57984 4.74552 4.77968 4.89199 5.04760 5.08999 5.36085 5.51120 5.63394 5.82951 6.05601 6.67267 6.74352 7.19970 7.37889 7.52990 8.86763 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.048898 B = 0.006507 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.482462 B = 4302.204058 C = 4690.033713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.270 3.730 3 H 0.007 0.993 4 C -0.550 4.550 5 H 0.076 0.924 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.690 5.690 13 C 0.547 3.453 14 O -0.579 6.579 15 C -0.136 4.136 16 C -0.056 4.056 17 C 0.052 3.948 18 N -0.256 5.256 19 N -0.265 5.265 20 C 0.075 3.925 21 H 0.069 0.931 22 H 0.015 0.985 23 H 0.042 0.958 24 H 0.266 0.734 25 H 0.407 0.593 26 H 0.174 0.826 27 H 0.223 0.777 28 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 -4.494 -11.354 12.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.167 3.833 3 H 0.025 0.975 4 C -0.588 4.588 5 H 0.094 0.906 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.189 1.189 12 N -0.339 5.339 13 C 0.332 3.668 14 O -0.460 6.460 15 C -0.150 4.150 16 C -0.086 4.086 17 C -0.112 4.112 18 N -0.097 5.097 19 N -0.106 5.106 20 C -0.090 4.090 21 H 0.088 0.912 22 H 0.034 0.966 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.243 0.757 26 H 0.192 0.808 27 H 0.240 0.760 28 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 3.491 -4.973 -11.918 13.377 hybrid contribution -0.376 0.923 1.759 2.022 sum 3.115 -4.050 -10.158 11.371 Atomic orbital electron populations 1.21925 0.97886 0.99764 0.99915 1.18477 0.91399 0.92209 0.81250 0.97535 1.21500 1.32917 1.13805 0.90614 0.90568 1.25758 0.94784 0.95524 1.02242 1.70025 1.36747 1.23816 1.24797 0.85408 0.78648 0.78746 0.77620 1.19611 1.21294 1.18858 1.46247 1.63845 1.14381 1.09410 1.18394 0.78370 0.86347 0.83650 1.90734 1.52757 1.17088 1.85439 1.21279 1.01880 0.96135 0.95731 1.22929 0.91545 1.03256 0.90883 1.24956 0.93623 0.91278 1.01343 1.72791 1.10894 1.09491 1.16545 1.73032 1.10819 1.31007 0.95700 1.24804 0.92251 0.91855 1.00120 0.91205 0.96591 0.93890 0.92446 0.75695 0.80828 0.76022 0.78878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.59 9.26 71.98 0.67 -5.92 15 2 C 0.27 13.32 2.56 44.25 0.11 13.43 15 3 H 0.01 0.39 7.58 -2.39 -0.02 0.37 15 4 C -0.55 -27.87 8.73 25.60 0.22 -27.65 15 5 H 0.08 3.56 7.74 -2.92 -0.02 3.54 15 6 C 0.02 0.91 5.30 84.66 0.45 1.36 15 7 N -0.92 -50.92 11.32 21.45 0.24 -50.67 15 8 Si 0.97 40.69 29.54 68.60 2.03 42.71 15 9 H -0.27 -11.08 7.11 99.48 0.71 -10.38 15 10 H -0.29 -12.04 7.11 99.48 0.71 -11.33 15 11 H -0.26 -10.52 7.11 99.48 0.71 -9.81 15 12 N -0.69 -26.90 5.03 -448.69 -2.26 -29.16 15 13 C 0.55 20.61 7.77 86.87 0.67 21.29 15 14 O -0.58 -26.36 16.15 -3.79 -0.06 -26.42 15 15 C -0.14 -3.86 5.92 -19.83 -0.12 -3.98 15 16 C -0.06 -1.27 9.77 22.79 0.22 -1.05 15 17 C 0.05 0.98 11.30 84.74 0.96 1.94 15 18 N -0.26 -6.44 11.48 -57.33 -0.66 -7.10 15 19 N -0.27 -7.25 11.49 -56.53 -0.65 -7.90 15 20 C 0.07 1.91 10.84 85.04 0.92 2.83 15 21 H 0.07 3.72 6.07 -2.39 -0.01 3.71 15 22 H 0.01 0.72 8.14 -2.39 -0.02 0.70 15 23 H 0.04 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.27 14.08 8.31 -92.71 -0.77 13.31 15 25 H 0.41 12.97 6.69 -92.71 -0.62 12.35 15 26 H 0.17 3.53 7.80 -2.91 -0.02 3.51 15 27 H 0.22 2.00 8.06 -2.91 -0.02 1.98 15 28 H 0.19 4.00 6.53 -2.91 -0.02 3.98 15 Total: -1.00 -65.81 252.85 3.33 -62.48 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.57 Total: 13.80 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 4.11 Total: 2.25 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -3.32 Total: -94.83 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.06 Total: -26.42 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Total: -65.81 3.33 -62.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158844262.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.027 kcal (2) G-P(sol) polarization free energy of solvation -65.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds