Wall clock time and date at job start Mon Mar 30 2020 04:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21516 * 120.00178 * 0.02562 * 13 12 2 15 15 C 1.48141 * 119.99984 * 180.02562 * 13 12 2 16 16 C 1.40112 * 121.14362 * 179.72277 * 15 13 12 17 17 C 1.38504 * 117.81747 * 179.73745 * 16 15 13 18 18 N 1.31921 * 119.97131 * 0.54355 * 17 16 15 19 19 N 1.28276 * 122.51262 * 359.71501 * 18 17 16 20 20 C 1.31915 * 122.33202 * 0.02562 * 19 18 17 21 21 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 26 26 H 1.07994 * 121.08871 * 359.97438 * 16 15 13 27 27 H 1.08002 * 120.01465 * 180.25626 * 17 16 15 28 28 H 1.07996 * 120.17748 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8576 1.1608 2.4118 15 6 2.6413 -0.7162 3.5666 16 6 2.7897 -0.0392 4.7843 17 6 3.2521 -0.7604 5.8726 18 7 3.5467 -2.0393 5.7387 19 7 3.4181 -2.6635 4.6255 20 6 2.9814 -2.0711 3.5307 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.7088 1.1611 -3.4845 25 1 2.2490 -1.6316 1.1527 26 1 2.5479 1.0096 4.8723 27 1 3.3758 -0.2748 6.8294 28 1 2.8861 -2.6304 2.6119 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158844406.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:28 Heat of formation + Delta-G solvation = -4.493381 kcal Electronic energy + Delta-G solvation = -14320.387763 eV Core-core repulsion = 11757.017801 eV Total energy + Delta-G solvation = -2563.369962 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.21708 -40.41889 -36.87320 -34.73411 -34.14003 -33.55729 -30.86939 -27.37849 -26.59790 -25.55934 -23.22750 -21.59084 -19.80580 -18.65959 -18.05480 -17.30217 -17.06430 -16.41384 -16.33308 -15.75576 -15.48559 -14.74732 -14.56283 -14.34314 -13.75311 -13.02582 -12.92399 -12.79150 -12.28974 -12.15486 -12.06533 -11.47447 -11.32697 -11.20614 -11.13630 -10.72175 -10.61058 -9.91271 -8.19586 -6.36991 -0.74966 -0.18566 1.46102 1.46743 1.57050 1.74103 2.13990 2.44648 2.59229 3.03783 3.11829 3.26554 3.52232 3.62258 3.83490 4.35141 4.57989 4.74495 4.78003 4.89267 5.04800 5.09017 5.36072 5.51273 5.63394 5.82907 6.05614 6.67406 6.74361 7.19982 7.37840 7.53072 8.86728 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.048946 B = 0.006505 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.920973 B = 4303.270217 C = 4690.408824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.269 3.731 3 H 0.007 0.993 4 C -0.549 4.549 5 H 0.076 0.924 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.971 3.029 9 H -0.279 1.279 10 H -0.259 1.259 11 H -0.285 1.285 12 N -0.690 5.690 13 C 0.547 3.453 14 O -0.579 6.579 15 C -0.136 4.136 16 C -0.056 4.056 17 C 0.052 3.948 18 N -0.256 5.256 19 N -0.265 5.265 20 C 0.075 3.925 21 H 0.069 0.931 22 H 0.042 0.958 23 H 0.015 0.985 24 H 0.266 0.734 25 H 0.407 0.593 26 H 0.174 0.826 27 H 0.223 0.777 28 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.243 -4.507 11.375 12.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.587 4.587 5 H 0.094 0.906 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.205 1.205 10 H -0.183 1.183 11 H -0.211 1.211 12 N -0.339 5.339 13 C 0.332 3.668 14 O -0.460 6.460 15 C -0.150 4.150 16 C -0.086 4.086 17 C -0.112 4.112 18 N -0.097 5.097 19 N -0.106 5.106 20 C -0.090 4.090 21 H 0.088 0.912 22 H 0.061 0.939 23 H 0.034 0.966 24 H 0.075 0.925 25 H 0.243 0.757 26 H 0.192 0.808 27 H 0.240 0.760 28 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 3.492 -4.993 11.943 13.407 hybrid contribution -0.369 0.944 -1.769 2.039 sum 3.123 -4.049 10.173 11.386 Atomic orbital electron populations 1.21922 0.97880 0.99770 0.99911 1.18480 0.91407 0.92214 0.81266 0.97537 1.21530 1.32809 1.13783 0.90602 0.90563 1.25761 0.94781 0.95555 1.02250 1.70037 1.36765 1.23858 1.24721 0.85354 0.77723 0.79264 0.78067 1.20453 1.18319 1.21053 1.46246 1.63841 1.14374 1.09426 1.18395 0.78365 0.86346 0.83651 1.90732 1.52698 1.17109 1.85469 1.21284 1.01867 0.96130 0.95748 1.22929 0.91494 1.03287 0.90902 1.24956 0.93651 0.91261 1.01332 1.72790 1.10760 1.09565 1.16601 1.73021 1.10879 1.30990 0.95673 1.24800 0.92254 0.91857 1.00108 0.91205 0.93875 0.96603 0.92464 0.75696 0.80829 0.76022 0.78883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.59 9.26 71.98 0.67 -5.92 15 2 C 0.27 13.30 2.56 44.24 0.11 13.41 15 3 H 0.01 0.39 7.58 -2.38 -0.02 0.37 15 4 C -0.55 -27.80 8.73 25.60 0.22 -27.58 15 5 H 0.08 3.57 7.74 -2.91 -0.02 3.55 15 6 C 0.02 0.88 5.30 84.66 0.45 1.33 15 7 N -0.92 -50.88 11.32 21.45 0.24 -50.64 15 8 Si 0.97 40.70 29.54 68.60 2.03 42.73 15 9 H -0.28 -11.60 7.11 99.48 0.71 -10.89 15 10 H -0.26 -10.23 7.11 99.48 0.71 -9.52 15 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 15 12 N -0.69 -26.89 5.03 -448.70 -2.26 -29.15 15 13 C 0.55 20.61 7.77 86.87 0.67 21.28 15 14 O -0.58 -26.34 16.15 -3.77 -0.06 -26.41 15 15 C -0.14 -3.86 5.92 -19.83 -0.12 -3.98 15 16 C -0.06 -1.27 9.77 22.79 0.22 -1.05 15 17 C 0.05 0.98 11.30 84.74 0.96 1.94 15 18 N -0.26 -6.44 11.48 -57.33 -0.66 -7.09 15 19 N -0.27 -7.25 11.49 -56.54 -0.65 -7.90 15 20 C 0.07 1.91 10.84 85.04 0.92 2.84 15 21 H 0.07 3.72 6.07 -2.39 -0.01 3.71 15 22 H 0.04 1.91 8.14 -2.39 -0.02 1.89 15 23 H 0.01 0.71 8.14 -2.39 -0.02 0.70 15 24 H 0.27 14.02 8.31 -92.71 -0.77 13.25 15 25 H 0.41 12.97 6.69 -92.71 -0.62 12.35 15 26 H 0.17 3.53 7.80 -2.91 -0.02 3.51 15 27 H 0.22 2.00 8.06 -2.91 -0.02 1.98 15 28 H 0.19 4.00 6.53 -2.91 -0.02 3.98 15 Total: -1.00 -65.82 252.85 3.33 -62.49 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.57 Total: 13.69 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 4.11 Total: 2.28 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -3.32 Total: -94.79 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.06 Total: -26.41 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -65.82 3.33 -62.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158844406.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.997 kcal (2) G-P(sol) polarization free energy of solvation -65.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds