Wall clock time and date at job start Mon Mar 30 2020 04:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47234 * 2 1 4 4 C 1.36798 * 119.99942 * 288.91689 * 3 2 1 5 5 H 1.08003 * 119.99891 * 194.05236 * 4 3 2 6 6 C 1.39105 * 120.00030 * 14.32086 * 4 3 2 7 7 N 1.31327 * 119.99764 * 340.91533 * 6 4 3 8 8 Si 1.86796 * 119.99963 * 160.91578 * 6 4 3 9 9 H 1.48498 * 109.47096 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47151 * 120.00166 * 8 6 4 11 11 H 1.48498 * 109.47378 * 240.00149 * 8 6 4 12 12 C 1.34776 * 120.00008 * 108.91876 * 3 2 1 13 13 O 1.21572 * 119.99894 * 168.16966 * 12 3 2 14 14 C 1.47973 * 120.00036 * 348.16328 * 12 3 2 15 15 C 1.40208 * 121.15420 * 152.47497 * 14 12 3 16 16 C 1.38462 * 117.81376 * 179.79098 * 15 14 12 17 17 N 1.31939 * 119.97578 * 0.49237 * 16 15 14 18 18 N 1.28279 * 122.54107 * 359.74758 * 17 16 15 19 19 C 1.31892 * 122.33518 * 359.97438 * 18 17 16 20 20 H 1.09004 * 109.47075 * 295.34913 * 1 2 3 21 21 H 1.09000 * 109.47171 * 55.34901 * 1 2 3 22 22 H 1.08993 * 109.47596 * 175.35015 * 1 2 3 23 23 H 1.08997 * 109.47055 * 239.99861 * 2 1 3 24 24 H 1.09004 * 109.46972 * 120.00110 * 2 1 3 25 25 H 0.97001 * 119.99605 * 179.97438 * 7 6 4 26 26 H 1.08001 * 121.09129 * 0.02562 * 15 14 12 27 27 H 1.08001 * 120.00863 * 180.21764 * 16 15 14 28 28 H 1.08004 * 120.18085 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 1.8842 2.1540 -1.1207 5 1 2.4345 3.0793 -1.2076 6 6 1.0349 1.7510 -2.1460 7 7 0.6576 0.4960 -2.2309 8 14 0.4312 2.9949 -3.4021 9 1 0.9976 4.3310 -3.0872 10 1 0.8683 2.5799 -4.7593 11 1 -1.0516 3.0625 -3.3586 12 6 2.5998 1.8903 1.1041 13 8 3.1945 2.9490 1.0447 14 6 2.5141 1.1609 2.3887 15 6 3.5063 1.3002 3.3695 16 6 3.3545 0.5888 4.5477 17 7 2.3067 -0.1955 4.7138 18 7 1.3978 -0.3315 3.8189 19 6 1.4437 0.3046 2.6644 20 1 -0.3633 0.4400 0.9288 21 1 -0.3633 0.5843 -0.8454 22 1 -0.3634 -1.0242 -0.0833 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 0.0650 0.2150 -2.9457 26 1 4.3590 1.9442 3.2127 27 1 4.0959 0.6726 5.3286 28 1 0.6593 0.1639 1.9354 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158933349.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:17 Heat of formation + Delta-G solvation = 71.962232 kcal Electronic energy + Delta-G solvation = -15079.744519 eV Core-core repulsion = 12519.689921 eV Total energy + Delta-G solvation = -2560.054598 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.71492 -38.59008 -35.67907 -32.94671 -32.39760 -31.54285 -29.73684 -26.08444 -24.07871 -23.97119 -22.30644 -19.95559 -17.56500 -17.05155 -16.69469 -16.28569 -15.06639 -14.65474 -14.23980 -14.10077 -13.60096 -13.42241 -12.88061 -12.48120 -11.90172 -11.67789 -11.23224 -11.01671 -10.57603 -10.50708 -10.45906 -10.21637 -9.76166 -9.62683 -9.40639 -8.85443 -8.62072 -7.84021 -6.61186 -4.03635 0.90250 1.27544 2.97994 3.11197 3.18010 3.54640 3.85164 4.13009 4.45488 4.51622 4.77749 4.95547 5.05740 5.26210 5.36091 5.69699 5.92025 6.11297 6.30041 6.42222 6.47353 6.57732 6.72156 7.10829 7.26137 7.67598 7.81103 8.18685 8.85254 9.05087 9.07797 9.64925 10.25999 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.048331 B = 0.009136 C = 0.008003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.196265 B = 3064.016909 C = 3497.948673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 N -0.419 5.419 4 C -0.290 4.290 5 H 0.112 0.888 6 C 0.021 3.979 7 N -0.845 5.845 8 Si 0.933 3.067 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.276 1.276 12 C 0.462 3.538 13 O -0.587 6.587 14 C -0.092 4.092 15 C -0.092 4.092 16 C 0.030 3.970 17 N -0.259 5.259 18 N -0.253 5.253 19 C 0.033 3.967 20 H 0.020 0.980 21 H 0.123 0.877 22 H 0.044 0.956 23 H 0.101 0.899 24 H 0.042 0.958 25 H 0.273 0.727 26 H 0.152 0.848 27 H 0.169 0.831 28 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.517 -1.803 3.681 4.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.134 5.134 4 C -0.418 4.418 5 H 0.129 0.871 6 C -0.183 4.183 7 N -0.484 5.484 8 Si 0.758 3.242 9 H -0.189 1.189 10 H -0.205 1.205 11 H -0.201 1.201 12 C 0.251 3.749 13 O -0.473 6.473 14 C -0.107 4.107 15 C -0.122 4.122 16 C -0.133 4.133 17 N -0.102 5.102 18 N -0.094 5.094 19 C -0.131 4.131 20 H 0.038 0.962 21 H 0.141 0.859 22 H 0.063 0.937 23 H 0.119 0.881 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.169 0.831 27 H 0.186 0.814 28 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -0.133 -2.486 4.455 5.104 hybrid contribution 0.512 1.318 -1.499 2.060 sum 0.379 -1.168 2.957 3.201 Atomic orbital electron populations 1.23025 0.95876 1.02091 1.01617 1.21881 0.95622 0.82742 1.00754 1.43846 1.48019 1.11258 1.10298 1.19945 1.23098 1.03842 0.94924 0.87061 1.25400 0.96639 0.96922 0.99310 1.70277 1.32826 1.14524 1.30782 0.85747 0.78754 0.80641 0.79031 1.18878 1.20521 1.20135 1.17456 0.87348 0.87193 0.82891 1.90621 1.46985 1.24722 1.84972 1.21587 0.95343 0.96122 0.97688 1.22453 0.99116 0.97772 0.92874 1.24139 0.97682 0.94300 0.97206 1.72761 0.99584 1.14502 1.23334 1.72952 1.18547 1.18586 0.99359 1.25875 0.98996 0.91892 0.96344 0.96152 0.85943 0.93695 0.88106 0.94037 0.91532 0.83054 0.81395 0.78594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.39 8.40 37.16 0.31 -3.08 15 2 C 0.11 2.42 4.88 -4.05 -0.02 2.40 15 3 N -0.42 -10.15 2.70 -115.85 -0.31 -10.46 15 4 C -0.29 -7.42 9.39 -15.01 -0.14 -7.56 15 5 H 0.11 3.01 7.30 -52.48 -0.38 2.63 15 6 C 0.02 0.49 4.58 -17.45 -0.08 0.41 15 7 N -0.84 -19.31 7.28 55.50 0.40 -18.91 15 8 Si 0.93 18.77 29.59 -169.99 -5.03 13.74 15 9 H -0.26 -5.47 7.11 56.52 0.40 -5.07 15 10 H -0.28 -5.57 7.11 56.52 0.40 -5.17 15 11 H -0.28 -5.47 7.11 56.52 0.40 -5.07 15 12 C 0.46 11.16 7.39 -12.27 -0.09 11.07 15 13 O -0.59 -15.85 16.44 5.30 0.09 -15.76 15 14 C -0.09 -1.89 5.38 -104.57 -0.56 -2.45 15 15 C -0.09 -1.59 9.80 -38.76 -0.38 -1.97 15 16 C 0.03 0.47 11.30 -17.42 -0.20 0.27 15 17 N -0.26 -4.68 11.48 30.52 0.35 -4.33 15 18 N -0.25 -4.90 11.49 30.79 0.35 -4.54 15 19 C 0.03 0.64 8.81 -16.93 -0.15 0.49 15 20 H 0.02 0.39 6.00 -51.93 -0.31 0.08 15 21 H 0.12 2.73 4.50 -64.75 -0.29 2.44 15 22 H 0.04 0.81 8.14 -51.93 -0.42 0.38 15 23 H 0.10 2.30 6.70 -51.93 -0.35 1.96 15 24 H 0.04 0.83 4.84 -51.93 -0.25 0.58 15 25 H 0.27 5.86 8.31 -40.82 -0.34 5.52 15 26 H 0.15 2.39 8.00 -52.49 -0.42 1.97 15 27 H 0.17 1.82 8.06 -52.49 -0.42 1.40 15 28 H 0.20 3.75 2.79 -52.48 -0.15 3.60 15 LS Contribution 234.86 15.07 3.54 3.54 Total: -1.00 -27.86 234.86 -4.05 -31.91 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -2.13 Total: 5.23 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.31 Total: -0.42 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.80 Total: -38.24 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.09 Total: -15.76 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -27.86 -4.05 -31.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158933349.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.868 kcal (2) G-P(sol) polarization free energy of solvation -27.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds