Wall clock time and date at job start Mon Mar 30 2020 04:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47234 * 2 1 4 4 C 1.36798 * 119.99942 * 288.91689 * 3 2 1 5 5 H 1.08003 * 119.99891 * 194.05236 * 4 3 2 6 6 C 1.39105 * 120.00030 * 14.32086 * 4 3 2 7 7 N 1.31327 * 119.99764 * 340.91533 * 6 4 3 8 8 Si 1.86796 * 119.99963 * 160.91578 * 6 4 3 9 9 H 1.48498 * 109.47096 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47151 * 120.00166 * 8 6 4 11 11 H 1.48498 * 109.47378 * 240.00149 * 8 6 4 12 12 C 1.34776 * 120.00008 * 108.91876 * 3 2 1 13 13 O 1.21572 * 119.99894 * 168.16966 * 12 3 2 14 14 C 1.47973 * 120.00036 * 348.16328 * 12 3 2 15 15 C 1.40208 * 121.15420 * 152.47497 * 14 12 3 16 16 C 1.38462 * 117.81376 * 179.79098 * 15 14 12 17 17 N 1.31939 * 119.97578 * 0.49237 * 16 15 14 18 18 N 1.28279 * 122.54107 * 359.74758 * 17 16 15 19 19 C 1.31892 * 122.33518 * 359.97438 * 18 17 16 20 20 H 1.09004 * 109.47075 * 295.34913 * 1 2 3 21 21 H 1.09000 * 109.47171 * 55.34901 * 1 2 3 22 22 H 1.08993 * 109.47596 * 175.35015 * 1 2 3 23 23 H 1.08997 * 109.47055 * 239.99861 * 2 1 3 24 24 H 1.09004 * 109.46972 * 120.00110 * 2 1 3 25 25 H 0.97001 * 119.99605 * 179.97438 * 7 6 4 26 26 H 1.08001 * 121.09129 * 0.02562 * 15 14 12 27 27 H 1.08001 * 120.00863 * 180.21764 * 16 15 14 28 28 H 1.08004 * 120.18085 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 1.8842 2.1540 -1.1207 5 1 2.4345 3.0793 -1.2076 6 6 1.0349 1.7510 -2.1460 7 7 0.6576 0.4960 -2.2309 8 14 0.4312 2.9949 -3.4021 9 1 0.9976 4.3310 -3.0872 10 1 0.8683 2.5799 -4.7593 11 1 -1.0516 3.0625 -3.3586 12 6 2.5998 1.8903 1.1041 13 8 3.1945 2.9490 1.0447 14 6 2.5141 1.1609 2.3887 15 6 3.5063 1.3002 3.3695 16 6 3.3545 0.5888 4.5477 17 7 2.3067 -0.1955 4.7138 18 7 1.3978 -0.3315 3.8189 19 6 1.4437 0.3046 2.6644 20 1 -0.3633 0.4400 0.9288 21 1 -0.3633 0.5843 -0.8454 22 1 -0.3634 -1.0242 -0.0833 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 0.0650 0.2150 -2.9457 26 1 4.3590 1.9442 3.2127 27 1 4.0959 0.6726 5.3286 28 1 0.6593 0.1639 1.9354 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158933349.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:16 Heat of formation + Delta-G solvation = 53.676363 kcal Electronic energy + Delta-G solvation = -15080.537454 eV Core-core repulsion = 12519.689921 eV Total energy + Delta-G solvation = -2560.847533 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.22307 -40.32821 -37.52408 -34.61118 -33.86914 -33.21776 -31.43381 -27.81478 -25.66004 -25.45737 -24.01737 -21.64331 -19.23273 -18.83621 -18.24211 -17.72577 -16.82774 -16.24990 -15.77849 -15.74812 -15.36145 -14.96490 -14.57443 -14.08371 -13.57413 -13.42603 -12.91421 -12.76047 -12.21988 -12.14817 -12.09236 -11.75215 -11.24115 -11.15454 -10.95759 -10.63882 -10.39834 -9.64280 -8.40780 -5.94084 -0.59056 -0.11782 1.35160 1.45183 1.56648 1.88348 2.18756 2.57918 2.77191 2.97446 3.13905 3.47078 3.63718 3.66669 3.95240 4.25095 4.37306 4.67558 4.76102 4.79703 4.93930 5.12983 5.18373 5.32116 5.44092 5.90717 6.02225 6.35618 7.00054 7.25452 7.61890 7.81267 8.45708 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.048331 B = 0.009136 C = 0.008003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.196265 B = 3064.016909 C = 3497.948673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.118 3.882 3 N -0.426 5.426 4 C -0.340 4.340 5 H 0.082 0.918 6 C 0.003 3.997 7 N -0.845 5.845 8 Si 0.991 3.009 9 H -0.279 1.279 10 H -0.270 1.270 11 H -0.264 1.264 12 C 0.451 3.549 13 O -0.629 6.629 14 C -0.116 4.116 15 C -0.079 4.079 16 C 0.052 3.948 17 N -0.268 5.268 18 N -0.265 5.265 19 C 0.036 3.964 20 H 0.029 0.971 21 H 0.103 0.897 22 H 0.065 0.935 23 H 0.084 0.916 24 H 0.057 0.943 25 H 0.283 0.717 26 H 0.167 0.833 27 H 0.223 0.777 28 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.321 -2.591 4.645 5.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.004 4.004 3 N -0.141 5.141 4 C -0.468 4.468 5 H 0.100 0.900 6 C -0.201 4.201 7 N -0.482 5.482 8 Si 0.814 3.186 9 H -0.204 1.204 10 H -0.195 1.195 11 H -0.189 1.189 12 C 0.241 3.759 13 O -0.518 6.518 14 C -0.130 4.130 15 C -0.110 4.110 16 C -0.111 4.111 17 N -0.110 5.110 18 N -0.106 5.106 19 C -0.129 4.129 20 H 0.047 0.953 21 H 0.121 0.879 22 H 0.084 0.916 23 H 0.102 0.898 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.185 0.815 27 H 0.239 0.761 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.361 -3.336 5.418 6.373 hybrid contribution 0.637 1.509 -1.691 2.354 sum 0.276 -1.826 3.727 4.159 Atomic orbital electron populations 1.22850 0.94750 1.03032 1.01141 1.21886 0.96487 0.81397 1.00630 1.43992 1.47953 1.12020 1.10108 1.19778 1.25905 1.04215 0.96899 0.90018 1.25966 0.95690 0.98413 1.00047 1.70317 1.31901 1.14913 1.31061 0.84909 0.78547 0.77921 0.77177 1.20360 1.19523 1.18884 1.18012 0.86740 0.87097 0.84048 1.90567 1.48724 1.26611 1.85931 1.21381 0.97365 0.97480 0.96816 1.22790 0.98499 0.97198 0.92505 1.24854 0.97275 0.91720 0.97296 1.72715 1.00124 1.15100 1.23035 1.72964 1.19412 1.18890 0.99289 1.25754 0.98686 0.91818 0.96604 0.95318 0.87905 0.91578 0.89796 0.92477 0.90619 0.81532 0.76063 0.78717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.33 8.40 71.98 0.60 -5.72 15 2 C 0.12 5.08 4.88 86.38 0.42 5.50 15 3 N -0.43 -21.21 2.70 -638.70 -1.73 -22.93 15 4 C -0.34 -18.07 9.39 84.13 0.79 -17.28 15 5 H 0.08 4.71 7.30 -2.91 -0.02 4.69 15 6 C 0.00 0.14 4.58 84.98 0.39 0.53 15 7 N -0.84 -38.28 7.28 21.69 0.16 -38.12 15 8 Si 0.99 38.58 29.59 68.60 2.03 40.61 15 9 H -0.28 -11.42 7.11 99.48 0.71 -10.72 15 10 H -0.27 -10.08 7.11 99.48 0.71 -9.37 15 11 H -0.26 -9.75 7.11 99.48 0.71 -9.04 15 12 C 0.45 22.28 7.39 86.82 0.64 22.93 15 13 O -0.63 -35.18 16.44 -3.94 -0.06 -35.24 15 14 C -0.12 -4.65 5.38 -19.83 -0.11 -4.76 15 15 C -0.08 -2.56 9.80 22.80 0.22 -2.33 15 16 C 0.05 1.40 11.30 84.73 0.96 2.35 15 17 N -0.27 -8.82 11.48 -57.35 -0.66 -9.48 15 18 N -0.26 -9.70 11.49 -56.49 -0.65 -10.35 15 19 C 0.04 1.35 8.81 85.07 0.75 2.10 15 20 H 0.03 1.08 6.00 -2.38 -0.01 1.06 15 21 H 0.10 4.53 4.50 -27.71 -0.12 4.41 15 22 H 0.07 2.27 8.14 -2.39 -0.02 2.25 15 23 H 0.08 3.86 6.70 -2.39 -0.02 3.85 15 24 H 0.06 2.25 4.84 -2.39 -0.01 2.24 15 25 H 0.28 11.77 8.31 -92.71 -0.77 10.99 15 26 H 0.17 4.86 8.00 -2.91 -0.02 4.84 15 27 H 0.22 3.47 8.06 -2.91 -0.02 3.45 15 28 H 0.20 7.29 2.79 -2.91 -0.01 7.28 15 Total: -1.00 -61.13 234.86 4.85 -56.28 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 1.09 Total: 15.94 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 4.67 Total: 3.31 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -2.88 Total: -80.89 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.06 Total: -35.24 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -61.13 4.85 -56.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158933349.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.955 kcal (2) G-P(sol) polarization free energy of solvation -61.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds