Wall clock time and date at job start Mon Mar 30 2020 03:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52994 * 109.25290 * 311.90684 * 3 2 1 5 5 C 1.50703 * 109.47348 * 299.47045 * 4 3 2 6 6 H 1.08004 * 119.99520 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00478 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99746 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00176 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46992 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47436 * 120.00063 * 9 7 5 12 12 H 1.48507 * 109.47068 * 240.00351 * 9 7 5 13 13 C 1.52968 * 109.25658 * 71.37739 * 3 2 1 14 14 C 1.53533 * 108.82904 * 69.78191 * 13 3 2 15 15 C 1.51612 * 107.44972 * 60.57918 * 14 13 3 16 16 N 1.29160 * 120.61475 * 136.73402 * 15 14 13 17 17 N 1.37807 * 118.69357 * 316.76836 * 15 14 13 18 18 C 1.33919 * 121.59177 * 13.85117 * 17 15 14 19 19 O 1.21255 * 118.49098 * 177.93180 * 18 17 15 20 20 H 1.09000 * 109.47267 * 59.47121 * 4 3 2 21 21 H 1.09000 * 109.47568 * 179.47466 * 4 3 2 22 22 H 0.97001 * 120.00029 * 180.02562 * 8 7 5 23 23 H 1.09002 * 109.60196 * 189.62638 * 13 3 2 24 24 H 1.08997 * 109.59751 * 309.94382 * 13 3 2 25 25 H 1.08993 * 109.83021 * 180.26145 * 14 13 3 26 26 H 1.09007 * 109.82139 * 301.20175 * 14 13 3 27 27 H 0.97001 * 120.00253 * 180.02562 * 16 15 14 28 28 H 0.96997 * 119.20210 * 193.82378 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1128 -0.9638 1.0750 5 6 2.6184 -0.5142 2.4257 6 1 2.0056 0.3713 2.5090 7 6 2.9482 -1.2331 3.5550 8 7 3.6948 -2.3111 3.4535 9 14 2.3347 -0.6761 5.2291 10 1 1.5204 0.5559 5.0731 11 1 1.5020 -1.7473 5.8327 12 1 3.4945 -0.3936 6.1125 13 6 3.1126 -0.4603 -1.3685 14 6 2.8014 0.6296 -2.4042 15 6 3.5283 1.8880 -1.9723 16 7 4.1584 2.6129 -2.8359 17 7 3.5039 2.2423 -0.6408 18 6 3.1023 1.3847 0.3061 19 8 3.1393 1.7426 1.4640 20 1 2.7403 -1.9669 0.8671 21 1 4.2028 -0.9732 1.0718 22 1 3.9265 -2.8171 4.2479 23 1 4.1890 -0.6261 -1.3244 24 1 2.6112 -1.3862 -1.6502 25 1 3.1506 0.3154 -3.3877 26 1 1.7277 0.8154 -2.4340 27 1 4.6208 3.4161 -2.5498 28 1 3.7848 3.1343 -0.3832 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166557735.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:33 Heat of formation + Delta-G solvation = -12.990374 kcal Electronic energy + Delta-G solvation = -14960.114770 eV Core-core repulsion = 12396.376351 eV Total energy + Delta-G solvation = -2563.738419 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.20367 -38.44100 -38.08636 -35.86690 -34.52127 -33.40940 -31.45428 -27.92877 -24.88203 -24.40141 -23.15777 -21.47645 -19.04568 -18.60609 -18.25068 -17.07939 -16.50681 -16.16065 -15.73156 -15.23223 -14.99869 -14.53271 -14.17045 -13.84734 -13.49405 -13.27356 -13.19221 -12.94588 -12.74749 -12.57145 -12.33027 -12.06086 -11.73450 -11.30123 -11.10729 -10.61922 -10.37494 -10.16384 -8.15817 -6.15332 0.72144 1.35277 1.38085 1.47987 1.50515 1.74052 1.82823 2.13468 2.44408 2.94843 3.19079 3.26071 3.54724 3.74160 3.84449 4.35466 4.53838 4.73032 4.93806 4.99138 5.17590 5.37032 5.41819 5.55517 5.82781 6.05779 6.21376 6.50137 6.74069 6.93413 7.23627 7.48801 8.95852 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.038767 B = 0.009211 C = 0.008848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.090567 B = 3039.112207 C = 3163.852114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.256 3.744 3 C 0.032 3.968 4 C 0.045 3.955 5 C -0.508 4.508 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.926 5.926 9 Si 0.939 3.061 10 H -0.281 1.281 11 H -0.279 1.279 12 H -0.279 1.279 13 C -0.109 4.109 14 C -0.072 4.072 15 C 0.402 3.598 16 N -0.715 5.715 17 N -0.684 5.684 18 C 0.531 3.469 19 O -0.511 6.511 20 H 0.035 0.965 21 H 0.034 0.966 22 H 0.261 0.739 23 H 0.110 0.890 24 H 0.120 0.880 25 H 0.144 0.856 26 H 0.097 0.903 27 H 0.344 0.656 28 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.957 5.441 -12.740 13.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.062 4.062 3 C 0.025 3.975 4 C 0.006 3.994 5 C -0.546 4.546 6 H 0.074 0.926 7 C -0.188 4.188 8 N -0.568 5.568 9 Si 0.766 3.234 10 H -0.206 1.206 11 H -0.205 1.205 12 H -0.204 1.204 13 C -0.148 4.148 14 C -0.111 4.111 15 C 0.120 3.880 16 N -0.343 5.343 17 N -0.340 5.340 18 C 0.314 3.686 19 O -0.380 6.380 20 H 0.053 0.947 21 H 0.052 0.948 22 H 0.070 0.930 23 H 0.129 0.871 24 H 0.138 0.862 25 H 0.162 0.838 26 H 0.116 0.884 27 H 0.162 0.838 28 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.385 5.238 -12.983 14.005 hybrid contribution 0.496 1.198 2.541 2.853 sum 0.882 6.436 -10.441 12.297 Atomic orbital electron populations 1.81073 1.13139 1.08945 1.10697 1.28377 0.94102 0.92542 0.91146 1.18556 0.82433 0.94282 1.02251 1.19117 0.97008 0.93031 0.90204 1.21597 1.30830 1.09502 0.92686 0.92637 1.25528 0.95975 0.95315 1.01989 1.70004 1.38953 1.17886 1.29955 0.85788 0.78246 0.77981 0.81395 1.20581 1.20466 1.20438 1.22014 1.04737 1.00425 0.87598 1.21208 1.00386 0.87673 1.01839 1.23641 0.90367 0.95545 0.78420 1.69700 1.15920 1.13403 1.35247 1.44942 1.64392 1.16962 1.07682 1.20157 0.76578 0.86885 0.84956 1.90859 1.50279 1.76103 1.20782 0.94674 0.94784 0.92969 0.87138 0.86197 0.83826 0.88438 0.83789 0.74832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -18.79 18.54 20.00 0.37 -18.42 15 2 C 0.26 9.68 11.96 89.44 1.07 10.75 15 3 C 0.03 1.09 0.50 -54.93 -0.03 1.07 15 4 C 0.04 2.03 3.94 29.85 0.12 2.14 15 5 C -0.51 -27.78 6.96 25.60 0.18 -27.61 15 6 H 0.06 3.20 5.88 -2.91 -0.02 3.18 15 7 C 0.01 0.53 5.46 84.65 0.46 1.00 15 8 N -0.93 -53.67 13.29 21.45 0.28 -53.39 15 9 Si 0.94 46.19 29.54 68.60 2.03 48.21 15 10 H -0.28 -14.05 7.11 99.48 0.71 -13.34 15 11 H -0.28 -13.28 7.11 99.48 0.71 -12.58 15 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 15 13 C -0.11 -2.38 4.74 30.76 0.15 -2.24 15 14 C -0.07 -1.28 6.05 30.32 0.18 -1.09 15 15 C 0.40 8.53 7.69 137.90 1.06 9.59 15 16 N -0.71 -14.61 14.01 -48.70 -0.68 -15.29 15 17 N -0.68 -17.43 5.26 -302.31 -1.59 -19.02 15 18 C 0.53 18.72 6.55 87.61 0.57 19.29 15 19 O -0.51 -23.16 14.27 -2.95 -0.04 -23.20 15 20 H 0.04 1.63 8.14 -2.39 -0.02 1.61 15 21 H 0.03 1.59 8.14 -2.39 -0.02 1.58 15 22 H 0.26 14.43 8.31 -92.71 -0.77 13.66 15 23 H 0.11 2.18 8.12 -2.39 -0.02 2.16 15 24 H 0.12 2.18 8.10 -2.39 -0.02 2.16 15 25 H 0.14 1.74 8.14 -2.39 -0.02 1.72 15 26 H 0.10 1.74 7.49 -2.38 -0.02 1.72 15 27 H 0.34 6.13 8.84 -92.71 -0.82 5.31 15 28 H 0.41 9.11 8.77 -92.71 -0.81 8.29 15 Total: -1.00 -69.09 249.99 3.72 -65.38 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -0.41 Total: 2.84 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 3.76 Total: 12.89 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -1.62 Total: -106.12 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.04 Total: -23.20 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -69.09 3.72 -65.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166557735.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.385 kcal (2) G-P(sol) polarization free energy of solvation -69.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds