Wall clock time and date at job start Mon Mar 30 2020 02:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21311 * 120.00199 * 2 1 4 4 C 1.46781 * 120.00122 * 179.97438 * 2 1 3 5 5 C 1.39942 * 120.19387 * 0.02562 * 4 2 1 6 6 C 1.38386 * 119.81041 * 179.97438 * 5 4 2 7 7 N 1.39824 * 119.89302 * 180.02562 * 6 5 4 8 8 C 1.39254 * 120.21027 * 359.97438 * 6 5 4 9 9 C 1.37930 * 120.39704 * 359.76080 * 8 6 5 10 10 C 1.38834 * 120.18205 * 0.51408 * 9 8 6 11 11 O 1.35502 * 120.10499 * 179.74130 * 10 9 8 12 12 C 1.34782 * 116.99973 * 354.39296 * 11 10 9 13 13 H 1.08000 * 119.99662 * 5.06714 * 12 11 10 14 14 C 1.38698 * 119.99726 * 185.06135 * 12 11 10 15 15 N 1.31516 * 120.00591 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99597 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47284 * 60.00239 * 16 14 12 18 18 H 1.48508 * 109.47190 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47284 * 299.99694 * 16 14 12 20 20 H 1.08998 * 109.47135 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47453 * 300.00463 * 1 2 3 22 22 H 1.09005 * 109.46695 * 60.00500 * 1 2 3 23 23 H 1.07999 * 120.09215 * 359.95696 * 5 4 2 24 24 H 0.96999 * 120.00497 * 0.02562 * 7 6 5 25 25 H 0.97010 * 120.00041 * 180.02562 * 7 6 5 26 26 H 1.08004 * 119.80640 * 180.02562 * 8 6 5 27 27 H 1.07999 * 119.90939 * 180.28511 * 9 8 6 28 28 H 0.96996 * 120.00736 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2409 -1.2711 0.0006 5 6 1.5453 -2.4855 0.0006 6 6 2.2453 -3.6792 0.0006 7 7 1.5520 -4.8935 0.0000 8 6 3.6378 -3.6750 0.0000 9 6 4.3321 -2.4832 -0.0055 10 6 3.6465 -1.2760 0.0002 11 8 4.3301 -0.1061 0.0001 12 6 5.6712 -0.1811 0.1116 13 1 6.1599 -1.1442 0.1134 14 6 6.4236 0.9787 0.2240 15 7 5.8286 2.1515 0.2221 16 14 8.2824 0.8747 0.3778 17 1 8.8413 0.1992 -0.8207 18 1 8.8477 2.2439 0.4835 19 1 8.6359 0.0986 1.5935 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 0.4653 -2.4909 0.0009 24 1 0.5820 -4.8983 -0.0007 25 1 2.0411 -5.7313 0.0004 26 1 4.1775 -4.6105 -0.0004 27 1 5.4120 -2.4891 -0.0105 28 1 6.3548 2.9626 0.3003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167465676.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:21 Heat of formation + Delta-G solvation = -32.839726 kcal Electronic energy + Delta-G solvation = -14594.021194 eV Core-core repulsion = 11997.129291 eV Total energy + Delta-G solvation = -2596.891903 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.40855 -37.52911 -36.88341 -33.19304 -32.05102 -31.18866 -28.61075 -27.17957 -25.12350 -23.14133 -21.13506 -19.13453 -18.05642 -17.02544 -16.12815 -15.70414 -14.53616 -14.39793 -14.25596 -14.14326 -13.84143 -13.30153 -13.23562 -12.38214 -12.02233 -11.69274 -11.59404 -11.43875 -11.40967 -11.00497 -10.85510 -10.44685 -9.53117 -9.43539 -8.58189 -8.54013 -8.24309 -6.51657 -6.36027 -3.93543 1.57761 2.50636 3.15764 3.17919 3.20167 3.40441 4.00086 4.39775 4.64400 4.97417 5.14969 5.26990 5.52402 5.61038 5.74187 5.90849 6.04061 6.17517 6.41306 6.46617 6.70676 6.89729 6.92444 7.22169 7.33492 7.53783 8.01871 8.09116 8.25266 8.67464 9.04584 9.79186 10.78750 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.029659 B = 0.009615 C = 0.007295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.835865 B = 2911.532584 C = 3837.346738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.374 3.626 3 O -0.433 6.433 4 C -0.218 4.218 5 C -0.106 4.106 6 C 0.104 3.896 7 N -0.894 5.894 8 C -0.110 4.110 9 C -0.198 4.198 10 C 0.155 3.845 11 O -0.136 6.136 12 C -0.402 4.402 13 H 0.091 0.909 14 C 0.043 3.957 15 N -0.840 5.840 16 Si 0.939 3.061 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.270 1.270 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.120 0.880 24 H 0.388 0.612 25 H 0.388 0.612 26 H 0.110 0.890 27 H 0.133 0.867 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.652 -10.406 -0.150 12.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.252 3.748 3 O -0.308 6.308 4 C -0.221 4.221 5 C -0.129 4.129 6 C 0.005 3.995 7 N -0.439 5.439 8 C -0.132 4.132 9 C -0.218 4.218 10 C 0.097 3.903 11 O -0.036 6.036 12 C -0.478 4.478 13 H 0.108 0.892 14 C -0.164 4.164 15 N -0.473 5.473 16 Si 0.764 3.236 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.195 1.195 20 H 0.093 0.907 21 H 0.099 0.901 22 H 0.099 0.901 23 H 0.138 0.862 24 H 0.215 0.785 25 H 0.215 0.785 26 H 0.128 0.872 27 H 0.150 0.850 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.260 -9.207 -0.153 11.134 hybrid contribution 0.731 -0.706 0.077 1.019 sum -5.528 -9.913 -0.076 11.351 Atomic orbital electron populations 1.22184 0.96000 1.03400 1.03593 1.21990 0.90361 0.88384 0.74068 1.90710 1.71281 1.33588 1.35247 1.19315 0.90964 0.94322 1.17543 1.20417 0.98083 0.89899 1.04546 1.17257 0.91089 0.86116 1.05054 1.42070 1.07761 1.04533 1.89511 1.20475 0.91984 0.97439 1.03305 1.21025 1.00660 0.91430 1.08667 1.19416 0.90678 0.86721 0.93482 1.84129 1.20057 1.24038 1.75344 1.21373 0.78964 0.94674 1.52785 0.89203 1.25328 1.00364 0.94238 0.96462 1.70100 1.36231 0.97459 1.43494 0.85824 0.80724 0.77944 0.79144 1.19490 1.20255 1.19496 0.90739 0.90056 0.90065 0.86230 0.78541 0.78550 0.87226 0.84956 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.96 10.19 36.00 0.37 -2.60 15 2 C 0.37 8.21 7.21 -30.86 -0.22 7.98 15 3 O -0.43 -11.89 15.91 -16.40 -0.26 -12.15 15 4 C -0.22 -4.79 5.88 -104.93 -0.62 -5.41 15 5 C -0.11 -1.87 9.28 -38.89 -0.36 -2.23 15 6 C 0.10 1.73 6.75 -83.78 -0.57 1.16 15 7 N -0.89 -10.75 9.09 32.41 0.29 -10.45 15 8 C -0.11 -1.97 9.87 -39.32 -0.39 -2.36 15 9 C -0.20 -4.30 9.15 -39.47 -0.36 -4.66 15 10 C 0.15 3.89 6.67 -38.49 -0.26 3.64 15 11 O -0.14 -4.06 7.82 -20.99 -0.16 -4.23 15 12 C -0.40 -11.54 9.48 30.90 0.29 -11.25 15 13 H 0.09 2.33 5.20 -52.49 -0.27 2.06 15 14 C 0.04 1.21 5.49 -17.52 -0.10 1.12 15 15 N -0.84 -25.71 13.67 55.48 0.76 -24.96 15 16 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 15 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 20 H 0.07 0.92 5.60 -51.93 -0.29 0.63 15 21 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 22 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.12 1.67 5.92 -52.49 -0.31 1.36 15 24 H 0.39 3.81 8.84 -40.82 -0.36 3.45 15 25 H 0.39 3.91 8.84 -40.82 -0.36 3.55 15 26 H 0.11 1.63 8.06 -52.48 -0.42 1.20 15 27 H 0.13 2.83 5.63 -52.49 -0.30 2.53 15 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 15 LS Contribution 250.02 15.07 3.77 3.77 Total: -1.00 -34.59 250.02 -5.13 -39.72 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -2.29 Total: 7.09 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -2.21 Total: -14.61 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 1.05 Total: -35.41 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.43 Total: -16.38 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -34.59 -5.13 -39.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167465676.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.876 kcal (2) G-P(sol) polarization free energy of solvation -34.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds