Wall clock time and date at job start Mon Mar 30 2020 02:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21311 * 120.00199 * 2 1 4 4 C 1.46781 * 120.00122 * 179.97438 * 2 1 3 5 5 C 1.39942 * 120.19387 * 0.02562 * 4 2 1 6 6 C 1.38386 * 119.81041 * 179.97438 * 5 4 2 7 7 N 1.39824 * 119.89302 * 180.02562 * 6 5 4 8 8 C 1.39254 * 120.21027 * 359.97438 * 6 5 4 9 9 C 1.37930 * 120.39704 * 359.76080 * 8 6 5 10 10 C 1.38834 * 120.18205 * 0.51408 * 9 8 6 11 11 O 1.35502 * 120.10499 * 179.74130 * 10 9 8 12 12 C 1.34782 * 116.99973 * 354.39296 * 11 10 9 13 13 H 1.08000 * 119.99662 * 5.06714 * 12 11 10 14 14 C 1.38698 * 119.99726 * 185.06135 * 12 11 10 15 15 N 1.31516 * 120.00591 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99597 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47284 * 60.00239 * 16 14 12 18 18 H 1.48508 * 109.47190 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47284 * 299.99694 * 16 14 12 20 20 H 1.08998 * 109.47135 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47453 * 300.00463 * 1 2 3 22 22 H 1.09005 * 109.46695 * 60.00500 * 1 2 3 23 23 H 1.07999 * 120.09215 * 359.95696 * 5 4 2 24 24 H 0.96999 * 120.00497 * 0.02562 * 7 6 5 25 25 H 0.97010 * 120.00041 * 180.02562 * 7 6 5 26 26 H 1.08004 * 119.80640 * 180.02562 * 8 6 5 27 27 H 1.07999 * 119.90939 * 180.28511 * 9 8 6 28 28 H 0.96996 * 120.00736 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2409 -1.2711 0.0006 5 6 1.5453 -2.4855 0.0006 6 6 2.2453 -3.6792 0.0006 7 7 1.5520 -4.8935 0.0000 8 6 3.6378 -3.6750 0.0000 9 6 4.3321 -2.4832 -0.0055 10 6 3.6465 -1.2760 0.0002 11 8 4.3301 -0.1061 0.0001 12 6 5.6712 -0.1811 0.1116 13 1 6.1599 -1.1442 0.1134 14 6 6.4236 0.9787 0.2240 15 7 5.8286 2.1515 0.2221 16 14 8.2824 0.8747 0.3778 17 1 8.8413 0.1992 -0.8207 18 1 8.8477 2.2439 0.4835 19 1 8.6359 0.0986 1.5935 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 0.4653 -2.4909 0.0009 24 1 0.5820 -4.8983 -0.0007 25 1 2.0411 -5.7313 0.0004 26 1 4.1775 -4.6105 -0.0004 27 1 5.4120 -2.4891 -0.0105 28 1 6.3548 2.9626 0.3003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167465676.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:21 Heat of formation + Delta-G solvation = -58.879127 kcal Electronic energy + Delta-G solvation = -14595.150347 eV Core-core repulsion = 11997.129291 eV Total energy + Delta-G solvation = -2598.021056 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = -1.22 seconds Orbital eigenvalues (eV) -41.11400 -39.35592 -38.53288 -34.76618 -33.93099 -32.78339 -30.04228 -28.73345 -27.08134 -24.72544 -22.78147 -20.74367 -19.88850 -18.75432 -17.54596 -17.28610 -16.28783 -15.98394 -15.93793 -15.67959 -15.49678 -15.09231 -14.93048 -14.05321 -13.52223 -13.45853 -13.18145 -12.91769 -12.87783 -12.69829 -12.35672 -12.14430 -11.41950 -11.10585 -10.39673 -10.28844 -9.83032 -8.40158 -8.02273 -6.06162 -0.03848 0.87536 1.33526 1.46645 1.51270 1.77372 2.19438 2.89931 3.20501 3.24613 3.46767 3.59842 4.05370 4.17520 4.45633 4.52013 4.72140 4.78955 4.88935 5.01666 5.17204 5.23366 5.38117 5.49079 5.70479 5.95728 6.02893 6.83012 6.98426 7.03174 7.30500 7.89562 8.81518 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.029659 B = 0.009615 C = 0.007295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.835865 B = 2911.532584 C = 3837.346738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.366 3.634 3 O -0.504 6.504 4 C -0.232 4.232 5 C -0.101 4.101 6 C 0.134 3.866 7 N -0.870 5.870 8 C -0.107 4.107 9 C -0.213 4.213 10 C 0.103 3.897 11 O -0.200 6.200 12 C -0.425 4.425 13 H 0.104 0.896 14 C -0.025 4.025 15 N -0.911 5.911 16 Si 1.021 2.979 17 H -0.255 1.255 18 H -0.274 1.274 19 H -0.255 1.255 20 H 0.112 0.888 21 H 0.097 0.903 22 H 0.097 0.903 23 H 0.167 0.833 24 H 0.406 0.594 25 H 0.404 0.596 26 H 0.148 0.852 27 H 0.124 0.876 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.511 -14.350 -0.099 16.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.248 3.752 3 O -0.383 6.383 4 C -0.235 4.235 5 C -0.124 4.124 6 C 0.031 3.969 7 N -0.415 5.415 8 C -0.129 4.129 9 C -0.233 4.233 10 C 0.049 3.951 11 O -0.104 6.104 12 C -0.501 4.501 13 H 0.121 0.879 14 C -0.224 4.224 15 N -0.548 5.548 16 Si 0.840 3.160 17 H -0.179 1.179 18 H -0.199 1.199 19 H -0.180 1.180 20 H 0.131 0.869 21 H 0.115 0.885 22 H 0.116 0.884 23 H 0.184 0.816 24 H 0.236 0.764 25 H 0.233 0.767 26 H 0.166 0.834 27 H 0.141 0.859 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.199 -13.289 -0.106 15.615 hybrid contribution 0.933 0.106 0.046 0.940 sum -7.266 -13.183 -0.060 15.052 Atomic orbital electron populations 1.22159 0.90025 1.06388 1.05086 1.23134 0.93626 0.87297 0.71172 1.90704 1.73456 1.35791 1.38374 1.19889 0.90297 0.96538 1.16766 1.20810 1.00249 0.88275 1.03041 1.17411 0.90839 0.87624 1.00998 1.42022 1.08857 1.03379 1.87274 1.20822 0.92981 0.97349 1.01767 1.21084 1.00589 0.91889 1.09706 1.20198 0.92424 0.86982 0.95516 1.84116 1.20420 1.26535 1.79313 1.21938 0.79640 0.95586 1.52905 0.87920 1.26708 1.06295 0.93457 0.95895 1.70297 1.38517 0.98452 1.47563 0.84634 0.73176 0.78236 0.79972 1.17892 1.19863 1.17952 0.86914 0.88486 0.88411 0.81552 0.76445 0.76696 0.83436 0.85851 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.94 10.19 71.23 0.73 -4.21 15 2 C 0.37 16.22 7.21 27.92 0.20 16.43 15 3 O -0.50 -29.49 15.91 17.85 0.28 -29.21 15 4 C -0.23 -10.13 5.88 -20.07 -0.12 -10.25 15 5 C -0.10 -3.12 9.28 22.72 0.21 -2.91 15 6 C 0.13 3.77 6.75 38.15 0.26 4.03 15 7 N -0.87 -15.09 9.09 -51.38 -0.47 -15.56 15 8 C -0.11 -3.49 9.87 22.44 0.22 -3.26 15 9 C -0.21 -9.32 9.15 22.34 0.20 -9.12 15 10 C 0.10 5.38 6.67 22.98 0.15 5.53 15 11 O -0.20 -12.91 7.82 1.44 0.01 -12.90 15 12 C -0.42 -26.13 9.48 67.93 0.64 -25.48 15 13 H 0.10 5.67 5.20 -2.91 -0.02 5.65 15 14 C -0.03 -1.53 5.49 84.85 0.47 -1.06 15 15 N -0.91 -60.35 13.67 21.62 0.30 -60.05 15 16 Si 1.02 44.92 29.55 68.60 2.03 46.94 15 17 H -0.25 -10.39 7.11 99.48 0.71 -9.69 15 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 19 H -0.26 -10.43 7.11 99.48 0.71 -9.73 15 20 H 0.11 2.15 5.60 -2.39 -0.01 2.14 15 21 H 0.10 2.43 8.14 -2.39 -0.02 2.41 15 22 H 0.10 2.43 8.14 -2.38 -0.02 2.41 15 23 H 0.17 3.51 5.92 -2.91 -0.02 3.49 15 24 H 0.41 4.99 8.84 -92.71 -0.82 4.17 15 25 H 0.40 5.38 8.84 -92.70 -0.82 4.56 15 26 H 0.15 3.66 8.06 -2.91 -0.02 3.64 15 27 H 0.12 5.46 5.63 -2.91 -0.02 5.45 15 28 H 0.27 16.38 8.31 -92.71 -0.77 15.61 15 Total: -1.00 -86.61 250.02 4.70 -81.90 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -0.41 Total: 19.17 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 2.97 Total: -30.31 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -0.17 Total: -75.61 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: 0.30 Total: -42.10 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -86.61 4.70 -81.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167465676.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.025 kcal (2) G-P(sol) polarization free energy of solvation -86.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.21 seconds