Wall clock time and date at job start Mon Mar 30 2020 02:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 120.00041 * 2 1 4 4 N 1.34775 * 119.99804 * 180.02562 * 2 1 3 5 5 C 1.40046 * 119.99777 * 184.44406 * 4 2 1 6 6 C 1.39468 * 119.86773 * 325.24150 * 5 4 2 7 7 C 1.38191 * 120.52221 * 179.72444 * 6 5 4 8 8 C 1.38428 * 120.24336 * 0.56306 * 7 6 5 9 9 O 1.35685 * 120.13410 * 179.74254 * 8 7 6 10 10 C 1.41339 * 119.72766 * 359.46805 * 8 7 6 11 11 C 1.41148 * 120.25329 * 180.27672 * 10 8 7 12 12 H 1.08001 * 119.99850 * 328.98499 * 11 10 8 13 13 C 1.39904 * 119.99874 * 148.98154 * 11 10 8 14 14 N 1.30882 * 120.00010 * 162.12125 * 13 11 10 15 15 Si 1.86799 * 120.00419 * 342.11826 * 13 11 10 16 16 H 1.48506 * 109.46921 * 90.88993 * 15 13 11 17 17 H 1.48494 * 109.47365 * 210.89159 * 15 13 11 18 18 H 1.48499 * 109.46897 * 330.89402 * 15 13 11 19 19 C 1.38054 * 119.86706 * 145.27551 * 5 4 2 20 20 H 1.09000 * 109.47286 * 239.99739 * 1 2 3 21 21 H 1.09002 * 109.46919 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47170 * 119.99837 * 1 2 3 23 23 H 0.97004 * 119.99991 * 4.43320 * 4 2 1 24 24 H 1.08006 * 119.73662 * 0.02912 * 6 5 4 25 25 H 1.08001 * 119.87681 * 180.30441 * 7 6 5 26 26 H 0.96702 * 113.99967 * 264.97985 * 9 8 7 27 27 H 0.97003 * 120.00241 * 180.02562 * 14 13 11 28 28 H 1.07995 * 120.12844 * 0.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5781 -1.1691 0.0935 6 6 4.3161 -0.1501 -0.5084 7 6 5.6950 -0.1355 -0.4194 8 6 6.3605 -1.1413 0.2602 9 8 7.7148 -1.1276 0.3419 10 6 5.6230 -2.1794 0.8737 11 6 6.2899 -3.2073 1.5744 12 1 7.2771 -3.5184 1.2662 13 6 5.6719 -3.8230 2.6682 14 7 6.1055 -4.9806 3.0985 15 14 4.2282 -2.9932 3.5145 16 1 2.9604 -3.4432 2.8856 17 1 4.2228 -3.3567 4.9543 18 1 4.3536 -1.5200 3.3763 19 6 4.2196 -2.1799 0.7809 20 1 -0.3634 -0.5139 0.8900 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3633 -0.5138 -0.8900 23 1 1.6979 -2.0060 -0.0658 24 1 3.8055 0.6365 -1.0442 25 1 6.2559 0.6612 -0.8852 26 1 8.1551 -1.6583 -0.3362 27 1 5.6768 -5.4077 3.8566 28 1 3.6460 -2.9684 1.2453 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214590342.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:52 Heat of formation + Delta-G solvation = -62.777753 kcal Electronic energy + Delta-G solvation = -14684.709574 eV Core-core repulsion = 12086.519461 eV Total energy + Delta-G solvation = -2598.190113 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.79881 -38.03700 -35.69076 -34.02925 -33.19300 -30.54549 -30.01877 -27.27427 -25.06291 -21.80289 -21.44994 -19.80227 -17.59799 -17.26450 -16.90362 -16.00788 -15.13916 -14.75044 -14.53669 -13.97953 -13.66711 -13.06766 -12.76043 -12.60564 -12.26799 -12.14641 -11.62109 -11.43869 -11.16464 -10.81625 -10.42914 -10.01444 -9.66298 -9.49333 -9.18690 -8.88729 -7.72851 -7.07364 -6.98963 -4.50642 2.21855 2.57362 2.95204 3.05965 3.18735 3.31433 3.57902 3.94863 4.42975 4.93119 5.17437 5.27346 5.35529 5.58936 5.77767 5.99421 6.33655 6.51747 6.56948 6.71288 7.05768 7.19373 7.35411 7.49120 7.69016 7.90600 8.02088 8.25718 8.43736 8.53548 8.71016 8.99694 10.02942 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.026285 B = 0.011741 C = 0.008657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.982295 B = 2384.246094 C = 3233.489522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.502 3.498 3 O -0.529 6.529 4 N -0.672 5.672 5 C 0.165 3.835 6 C -0.219 4.219 7 C -0.093 4.093 8 C -0.006 4.006 9 O -0.490 6.490 10 C 0.082 3.918 11 C -0.433 4.433 12 H 0.094 0.906 13 C 0.085 3.915 14 N -0.807 5.807 15 Si 0.913 3.087 16 H -0.271 1.271 17 H -0.290 1.290 18 H -0.247 1.247 19 C -0.254 4.254 20 H 0.086 0.914 21 H 0.091 0.909 22 H 0.086 0.914 23 H 0.404 0.596 24 H 0.117 0.883 25 H 0.105 0.895 26 H 0.360 0.640 27 H 0.285 0.715 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.100 2.671 -4.382 10.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.290 3.710 3 O -0.406 6.406 4 N -0.316 5.316 5 C 0.072 3.928 6 C -0.240 4.240 7 C -0.113 4.113 8 C -0.051 4.051 9 O -0.297 6.297 10 C 0.078 3.922 11 C -0.461 4.461 12 H 0.112 0.888 13 C -0.134 4.134 14 N -0.431 5.431 15 Si 0.739 3.261 16 H -0.198 1.198 17 H -0.217 1.217 18 H -0.170 1.170 19 C -0.275 4.275 20 H 0.105 0.895 21 H 0.110 0.890 22 H 0.105 0.895 23 H 0.238 0.762 24 H 0.135 0.865 25 H 0.123 0.877 26 H 0.212 0.788 27 H 0.096 0.904 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.779 3.581 -3.700 10.178 hybrid contribution -0.793 -0.662 0.096 1.037 sum -9.572 2.919 -3.604 10.637 Atomic orbital electron populations 1.21918 0.91818 1.05336 1.04121 1.20840 0.90422 0.83671 0.76080 1.90715 1.70411 1.31314 1.48120 1.43616 1.06433 1.09031 1.72556 1.17538 0.80508 0.97097 0.97637 1.20374 0.92804 1.01793 1.09034 1.20814 0.93999 0.98307 0.98152 1.18624 0.82233 0.96734 1.07536 1.84775 1.16333 1.72437 1.56178 1.17793 0.90734 0.91151 0.92516 1.19251 1.03860 1.12487 1.10520 0.88831 1.26119 0.97253 0.93177 0.96857 1.69710 1.38643 1.12450 1.22289 0.86320 0.80275 0.82529 0.76929 1.19751 1.21734 1.17027 1.20694 0.94784 1.02501 1.09550 0.89488 0.89032 0.89506 0.76203 0.86500 0.87726 0.78776 0.90415 0.87309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 10.32 36.00 0.37 -1.40 15 2 C 0.50 8.33 7.78 -10.99 -0.09 8.25 15 3 O -0.53 -11.11 14.49 5.55 0.08 -11.03 15 4 N -0.67 -11.65 5.33 -9.88 -0.05 -11.71 15 5 C 0.16 3.62 6.29 -83.71 -0.53 3.09 15 6 C -0.22 -4.95 8.70 -39.14 -0.34 -5.29 15 7 C -0.09 -2.11 9.96 -39.53 -0.39 -2.51 15 8 C -0.01 -0.14 6.74 -38.33 -0.26 -0.40 15 9 O -0.49 -11.09 12.86 -18.76 -0.24 -11.33 15 10 C 0.08 2.10 5.09 -106.70 -0.54 1.56 15 11 C -0.43 -11.70 9.17 -37.85 -0.35 -12.04 15 12 H 0.09 2.63 7.92 -52.49 -0.42 2.21 15 13 C 0.08 2.22 5.40 -17.33 -0.09 2.13 15 14 N -0.81 -21.31 13.93 55.55 0.77 -20.54 15 15 Si 0.91 21.08 24.60 -169.99 -4.18 16.90 15 16 H -0.27 -5.84 6.51 56.52 0.37 -5.47 15 17 H -0.29 -6.45 7.11 56.52 0.40 -6.04 15 18 H -0.25 -6.12 7.06 56.52 0.40 -5.72 15 19 C -0.25 -6.02 7.18 -38.74 -0.28 -6.30 15 20 H 0.09 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.09 0.90 8.12 -51.93 -0.42 0.48 15 22 H 0.09 0.68 8.14 -51.93 -0.42 0.25 15 23 H 0.40 5.50 8.82 -40.82 -0.36 5.14 15 24 H 0.12 2.61 6.18 -52.48 -0.32 2.28 15 25 H 0.10 2.12 8.06 -52.49 -0.42 1.69 15 26 H 0.36 6.45 9.06 45.56 0.41 6.86 15 27 H 0.29 6.83 8.30 -40.82 -0.34 6.49 15 28 H 0.11 2.51 4.74 -52.49 -0.25 2.26 15 LS Contribution 245.98 15.07 3.71 3.71 Total: -1.00 -31.95 245.98 -4.21 -36.15 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -1.80 Total: 10.76 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -2.49 Total: -12.91 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.72 Total: -32.25 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.16 Total: -22.36 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.18 Total: 16.90 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.95 -4.21 -36.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214590342.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.624 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds