Wall clock time and date at job start Mon Mar 30 2020 02:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 120.00041 * 2 1 4 4 N 1.34775 * 119.99804 * 180.02562 * 2 1 3 5 5 C 1.40046 * 119.99777 * 184.44406 * 4 2 1 6 6 C 1.39468 * 119.86773 * 325.24150 * 5 4 2 7 7 C 1.38191 * 120.52221 * 179.72444 * 6 5 4 8 8 C 1.38428 * 120.24336 * 0.56306 * 7 6 5 9 9 O 1.35685 * 120.13410 * 179.74254 * 8 7 6 10 10 C 1.41339 * 119.72766 * 359.46805 * 8 7 6 11 11 C 1.41148 * 120.25329 * 180.27672 * 10 8 7 12 12 H 1.08001 * 119.99850 * 328.98499 * 11 10 8 13 13 C 1.39904 * 119.99874 * 148.98154 * 11 10 8 14 14 N 1.30882 * 120.00010 * 162.12125 * 13 11 10 15 15 Si 1.86799 * 120.00419 * 342.11826 * 13 11 10 16 16 H 1.48506 * 109.46921 * 90.88993 * 15 13 11 17 17 H 1.48494 * 109.47365 * 210.89159 * 15 13 11 18 18 H 1.48499 * 109.46897 * 330.89402 * 15 13 11 19 19 C 1.38054 * 119.86706 * 145.27551 * 5 4 2 20 20 H 1.09000 * 109.47286 * 239.99739 * 1 2 3 21 21 H 1.09002 * 109.46919 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47170 * 119.99837 * 1 2 3 23 23 H 0.97004 * 119.99991 * 4.43320 * 4 2 1 24 24 H 1.08006 * 119.73662 * 0.02912 * 6 5 4 25 25 H 1.08001 * 119.87681 * 180.30441 * 7 6 5 26 26 H 0.96702 * 113.99967 * 264.97985 * 9 8 7 27 27 H 0.97003 * 120.00241 * 180.02562 * 14 13 11 28 28 H 1.07995 * 120.12844 * 0.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5781 -1.1691 0.0935 6 6 4.3161 -0.1501 -0.5084 7 6 5.6950 -0.1355 -0.4194 8 6 6.3605 -1.1413 0.2602 9 8 7.7148 -1.1276 0.3419 10 6 5.6230 -2.1794 0.8737 11 6 6.2899 -3.2073 1.5744 12 1 7.2771 -3.5184 1.2662 13 6 5.6719 -3.8230 2.6682 14 7 6.1055 -4.9806 3.0985 15 14 4.2282 -2.9932 3.5145 16 1 2.9604 -3.4432 2.8856 17 1 4.2228 -3.3567 4.9543 18 1 4.3536 -1.5200 3.3763 19 6 4.2196 -2.1799 0.7809 20 1 -0.3634 -0.5139 0.8900 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3633 -0.5138 -0.8900 23 1 1.6979 -2.0060 -0.0658 24 1 3.8055 0.6365 -1.0442 25 1 6.2559 0.6612 -0.8852 26 1 8.1551 -1.6583 -0.3362 27 1 5.6768 -5.4077 3.8566 28 1 3.6460 -2.9684 1.2453 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214590342.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:47 Heat of formation + Delta-G solvation = -88.005744 kcal Electronic energy + Delta-G solvation = -14685.803542 eV Core-core repulsion = 12086.519461 eV Total energy + Delta-G solvation = -2599.284081 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.29792 -39.76246 -37.39768 -35.83706 -34.88057 -32.39359 -31.23142 -28.83112 -26.96251 -23.61930 -23.02381 -21.39114 -19.41213 -19.06810 -18.39038 -17.57472 -16.58730 -16.54430 -16.35693 -15.62048 -15.14121 -14.77617 -14.55155 -13.96705 -13.62941 -13.36652 -13.28185 -13.11107 -12.84592 -12.63974 -12.28899 -11.86618 -11.47753 -11.00675 -10.90188 -10.63663 -9.60412 -8.93991 -8.80664 -6.51030 0.49160 0.70519 1.19450 1.33170 1.45160 1.66639 2.08304 2.25302 2.57456 3.29302 3.79773 3.87443 4.21235 4.51487 4.55659 4.66863 4.71725 4.87195 4.95549 5.09437 5.24588 5.45993 5.59526 5.70840 5.81234 6.12520 6.27450 6.52786 6.61231 6.72718 7.20815 7.27620 8.14615 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.026285 B = 0.011741 C = 0.008657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.982295 B = 2384.246094 C = 3233.489522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.497 3.503 3 O -0.578 6.578 4 N -0.666 5.666 5 C 0.166 3.834 6 C -0.218 4.218 7 C -0.095 4.095 8 C -0.021 4.021 9 O -0.501 6.501 10 C 0.063 3.937 11 C -0.466 4.466 12 H 0.064 0.936 13 C 0.052 3.948 14 N -0.841 5.841 15 Si 0.961 3.039 16 H -0.241 1.241 17 H -0.276 1.276 18 H -0.275 1.275 19 C -0.257 4.257 20 H 0.112 0.888 21 H 0.097 0.903 22 H 0.120 0.880 23 H 0.423 0.577 24 H 0.123 0.877 25 H 0.128 0.872 26 H 0.380 0.620 27 H 0.295 0.705 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.883 3.280 -4.743 13.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.288 3.712 3 O -0.458 6.458 4 N -0.313 5.313 5 C 0.072 3.928 6 C -0.239 4.239 7 C -0.114 4.114 8 C -0.067 4.067 9 O -0.310 6.310 10 C 0.059 3.941 11 C -0.495 4.495 12 H 0.082 0.918 13 C -0.163 4.163 14 N -0.468 5.468 15 Si 0.785 3.215 16 H -0.166 1.166 17 H -0.202 1.202 18 H -0.200 1.200 19 C -0.279 4.279 20 H 0.130 0.870 21 H 0.116 0.884 22 H 0.138 0.862 23 H 0.261 0.739 24 H 0.141 0.859 25 H 0.146 0.854 26 H 0.234 0.766 27 H 0.106 0.894 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.598 4.144 -4.081 12.974 hybrid contribution 0.086 -0.728 0.072 0.736 sum -11.511 3.416 -4.009 12.659 Atomic orbital electron populations 1.21946 0.86207 1.06709 1.06852 1.22061 0.92879 0.82309 0.73991 1.90695 1.71959 1.32936 1.50177 1.43672 1.04535 1.10752 1.72308 1.17609 0.83062 0.95939 0.96183 1.20630 0.92943 1.01859 1.08433 1.21067 0.94373 0.98280 0.97699 1.18822 0.82850 0.97051 1.07952 1.84693 1.15950 1.72952 1.57446 1.18009 0.91978 0.91265 0.92810 1.19215 1.03342 1.14511 1.12481 0.91807 1.26699 0.99313 0.93448 0.96838 1.69722 1.40251 1.13388 1.23394 0.85598 0.79189 0.79651 0.77109 1.16558 1.20207 1.19983 1.20776 0.94168 1.03207 1.09758 0.87000 0.88441 0.86201 0.73894 0.85949 0.85443 0.76557 0.89418 0.86640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 10.32 71.24 0.74 -1.75 15 2 C 0.50 14.86 7.78 87.66 0.68 15.54 15 3 O -0.58 -23.10 14.49 -3.04 -0.04 -23.15 15 4 N -0.67 -21.02 5.33 -303.57 -1.62 -22.64 15 5 C 0.17 6.99 6.29 38.08 0.24 7.23 15 6 C -0.22 -9.50 8.70 22.56 0.20 -9.30 15 7 C -0.10 -4.20 9.96 22.30 0.22 -3.98 15 8 C -0.02 -1.03 6.74 23.08 0.16 -0.87 15 9 O -0.50 -22.91 12.86 -90.04 -1.16 -24.07 15 10 C 0.06 3.26 5.09 -21.21 -0.11 3.15 15 11 C -0.47 -26.01 9.17 23.39 0.21 -25.79 15 12 H 0.06 3.80 7.92 -2.91 -0.02 3.77 15 13 C 0.05 2.77 5.40 85.24 0.46 3.23 15 14 N -0.84 -45.19 13.93 21.82 0.30 -44.89 15 15 Si 0.96 42.71 24.60 68.60 1.69 44.39 15 16 H -0.24 -9.44 6.51 99.48 0.65 -8.79 15 17 H -0.28 -11.49 7.11 99.48 0.71 -10.78 15 18 H -0.27 -13.41 7.06 99.48 0.70 -12.70 15 19 C -0.26 -11.95 7.18 22.82 0.16 -11.78 15 20 H 0.11 1.30 8.14 -2.39 -0.02 1.28 15 21 H 0.10 1.50 8.12 -2.39 -0.02 1.48 15 22 H 0.12 1.17 8.14 -2.39 -0.02 1.15 15 23 H 0.42 9.88 8.82 -92.71 -0.82 9.06 15 24 H 0.12 5.25 6.18 -2.91 -0.02 5.23 15 25 H 0.13 4.95 8.06 -2.91 -0.02 4.92 15 26 H 0.38 13.82 9.06 -74.06 -0.67 13.15 15 27 H 0.30 14.18 8.30 -92.71 -0.77 13.41 15 28 H 0.12 5.12 4.74 -2.91 -0.01 5.10 15 Total: -1.00 -70.19 245.98 1.79 -68.40 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: -0.34 Total: 26.28 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 2.96 Total: -24.32 kcal Atomic # 7 Polarization: -66.21 SS G_CDS: -1.32 Total: -67.53 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -1.20 Total: -47.22 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.69 Total: 44.39 kcal Total: -70.19 1.79 -68.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214590342.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.608 kcal (2) G-P(sol) polarization free energy of solvation -70.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds