Wall clock time and date at job start Mon Mar 30 2020 02:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00249 * 2 1 4 4 O 1.21770 * 120.00518 * 185.29827 * 3 2 1 5 5 C 1.41782 * 119.99696 * 5.29944 * 3 2 1 6 6 H 1.08000 * 119.99638 * 359.97438 * 5 3 2 7 7 C 1.40136 * 119.99860 * 179.97438 * 5 3 2 8 8 N 1.30628 * 120.00038 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99833 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46888 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46896 * 119.99920 * 9 7 5 12 12 H 1.48497 * 109.47454 * 240.00092 * 9 7 5 13 13 C 1.39517 * 119.99838 * 180.02562 * 2 1 3 14 14 C 1.39111 * 120.03035 * 294.68597 * 13 2 1 15 15 C 1.37957 * 119.97093 * 180.02562 * 14 13 2 16 16 C 1.38868 * 120.03344 * 359.97438 * 15 14 13 17 17 O 1.35902 * 119.97519 * 180.02562 * 16 15 14 18 18 C 1.38871 * 120.05048 * 0.27601 * 16 15 14 19 19 C 1.37966 * 120.03082 * 359.45539 * 18 16 15 20 20 H 1.09000 * 109.47016 * 269.99578 * 1 2 3 21 21 H 1.08994 * 109.47209 * 30.00008 * 1 2 3 22 22 H 1.09004 * 109.46928 * 149.99795 * 1 2 3 23 23 H 0.96994 * 119.99945 * 179.97438 * 8 7 5 24 24 H 1.07999 * 120.01101 * 0.02562 * 14 13 2 25 25 H 1.07997 * 119.98484 * 179.97438 * 15 14 13 26 26 H 0.96697 * 114.00396 * 90.00210 * 17 16 15 27 27 H 1.08005 * 119.98332 * 179.72299 * 18 16 15 28 28 H 1.08002 * 120.01248 * 180.25265 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3527 1.1695 -0.0974 5 6 1.4346 2.3924 0.1134 6 1 0.3580 2.3903 0.1994 7 6 2.1353 3.6060 0.1140 8 7 3.4375 3.6083 0.0105 9 14 1.2072 5.2203 0.2627 10 1 -0.2487 4.9464 0.3664 11 1 1.6623 5.9428 1.4776 12 1 1.4701 6.0548 -0.9371 13 6 2.1626 -1.2083 -0.0005 14 6 2.0750 -2.0632 1.0934 15 6 2.7657 -3.2574 1.0918 16 6 3.5477 -3.6066 -0.0014 17 8 4.2272 -4.7835 -0.0019 18 6 3.6400 -2.7516 -1.0918 19 6 2.9459 -1.5593 -1.0951 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3633 0.8899 -0.5138 22 1 -0.3633 -0.8900 -0.5139 23 1 3.9224 4.4483 0.0105 24 1 1.4666 -1.7921 1.9435 25 1 2.6982 -3.9211 1.9411 26 1 3.7288 -5.5253 -0.3712 27 1 4.2521 -3.0222 -1.9396 28 1 3.0147 -0.8965 -1.9451 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216695799.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:11 Heat of formation + Delta-G solvation = -70.680637 kcal Electronic energy + Delta-G solvation = -14552.275959 eV Core-core repulsion = 11953.743151 eV Total energy + Delta-G solvation = -2598.532808 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.02180 -39.55496 -37.47962 -35.44027 -34.65183 -31.95638 -30.43828 -28.35009 -26.97268 -23.86869 -23.56964 -21.38135 -19.31270 -18.60544 -17.90842 -17.31392 -16.78009 -16.33010 -15.90034 -15.26431 -15.03399 -14.56846 -14.35514 -13.66175 -13.45594 -13.18618 -13.11321 -13.00473 -12.83993 -12.73861 -12.29663 -11.96979 -11.40264 -10.98883 -9.99781 -9.87862 -9.77362 -8.89360 -8.35354 -6.98483 0.28588 0.41477 1.38677 1.39688 1.58175 2.21505 2.38597 2.70263 2.79129 3.32718 3.61418 4.00489 4.05442 4.41497 4.44927 4.60434 4.76650 4.82250 4.96657 5.06234 5.20130 5.28609 5.43908 5.59883 5.77515 5.86089 6.06956 6.59809 6.77959 6.93769 7.35369 8.42650 8.62348 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.057657 B = 0.007102 C = 0.006676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.510794 B = 3941.492312 C = 4193.087866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.616 5.616 3 C 0.535 3.465 4 O -0.628 6.628 5 C -0.563 4.563 6 H 0.097 0.903 7 C 0.029 3.971 8 N -0.807 5.807 9 Si 1.000 3.000 10 H -0.242 1.242 11 H -0.269 1.269 12 H -0.268 1.268 13 C 0.143 3.857 14 C -0.127 4.127 15 C -0.129 4.129 16 C 0.088 3.912 17 O -0.502 6.502 18 C -0.137 4.137 19 C -0.119 4.119 20 H 0.053 0.947 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.277 0.723 24 H 0.134 0.866 25 H 0.157 0.843 26 H 0.409 0.591 27 H 0.142 0.858 28 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.142 -10.574 0.080 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.349 5.349 3 C 0.346 3.654 4 O -0.515 6.515 5 C -0.598 4.598 6 H 0.115 0.885 7 C -0.188 4.188 8 N -0.436 5.436 9 Si 0.819 3.181 10 H -0.165 1.165 11 H -0.194 1.194 12 H -0.193 1.193 13 C 0.051 3.949 14 C -0.147 4.147 15 C -0.148 4.148 16 C 0.043 3.957 17 O -0.315 6.315 18 C -0.156 4.156 19 C -0.139 4.139 20 H 0.072 0.928 21 H 0.090 0.910 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.152 0.848 25 H 0.175 0.825 26 H 0.268 0.732 27 H 0.160 0.840 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.934 -10.133 0.266 11.746 hybrid contribution -0.333 0.603 -0.326 0.762 sum -6.267 -9.530 -0.060 11.406 Atomic orbital electron populations 1.21646 0.78238 1.02668 1.01566 1.45665 1.07254 1.03350 1.78601 1.17494 0.86844 0.83657 0.77427 1.90612 1.16334 1.87087 1.57480 1.20718 0.96040 0.90414 1.52669 0.88548 1.27104 0.95404 1.05257 0.91045 1.70207 1.09938 1.29151 1.34290 0.84933 0.79583 0.75000 0.78567 1.16476 1.19354 1.19269 1.18103 0.95805 0.87391 0.93648 1.21317 1.01548 0.95076 0.96730 1.21454 0.96460 0.97406 0.99443 1.18409 0.94937 0.88591 0.93740 1.84781 1.43548 1.17505 1.85692 1.21407 1.00170 0.94491 0.99568 1.21213 0.98687 0.96211 0.97816 0.92847 0.90969 0.90818 0.91323 0.84781 0.82519 0.73206 0.84025 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.62 9.86 127.77 1.26 4.88 15 2 N -0.62 -29.36 2.92 -664.32 -1.94 -31.31 15 3 C 0.54 31.75 7.32 85.12 0.62 32.38 15 4 O -0.63 -43.13 14.36 -4.57 -0.07 -43.19 15 5 C -0.56 -31.58 8.53 23.61 0.20 -31.38 15 6 H 0.10 4.76 6.04 -2.91 -0.02 4.74 15 7 C 0.03 1.61 5.50 85.33 0.47 2.08 15 8 N -0.81 -49.30 11.73 21.85 0.26 -49.04 15 9 Si 1.00 40.00 29.56 68.60 2.03 42.02 15 10 H -0.24 -8.80 7.11 99.48 0.71 -8.09 15 11 H -0.27 -10.39 7.11 99.48 0.71 -9.69 15 12 H -0.27 -10.32 7.11 99.48 0.71 -9.61 15 13 C 0.14 6.24 4.88 38.34 0.19 6.42 15 14 C -0.13 -4.56 9.81 22.41 0.22 -4.34 15 15 C -0.13 -3.87 9.98 22.35 0.22 -3.65 15 16 C 0.09 2.69 6.71 22.57 0.15 2.84 15 17 O -0.50 -12.19 13.50 -92.45 -1.25 -13.44 15 18 C -0.14 -4.75 9.98 22.36 0.22 -4.53 15 19 C -0.12 -5.07 9.19 22.41 0.21 -4.86 15 20 H 0.05 1.73 8.14 -2.39 -0.02 1.71 15 21 H 0.07 2.62 6.33 -2.39 -0.02 2.61 15 22 H 0.07 2.19 8.05 -2.39 -0.02 2.17 15 23 H 0.28 15.19 8.29 -92.71 -0.77 14.42 15 24 H 0.13 4.39 8.06 -2.91 -0.02 4.36 15 25 H 0.16 3.60 8.06 -2.91 -0.02 3.58 15 26 H 0.41 5.10 9.06 -74.06 -0.67 4.42 15 27 H 0.14 4.20 8.06 -2.91 -0.02 4.18 15 28 H 0.10 4.54 8.06 -2.91 -0.02 4.51 15 Total: -1.00 -79.10 253.30 3.31 -75.79 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.52 Total: 19.32 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 3.76 Total: -0.16 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -1.68 Total: -80.35 kcal Atomic # 8 Polarization: -55.32 SS G_CDS: -1.31 Total: -56.63 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.02 kcal Total: -79.10 3.31 -75.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216695799.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.108 kcal (2) G-P(sol) polarization free energy of solvation -79.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds