Wall clock time and date at job start Mon Mar 30 2020 03:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31471 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48503 * 109.47098 * 239.99689 * 3 2 1 5 5 H 1.48497 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46949 * 119.99863 * 3 2 1 7 7 C 1.38881 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99967 * 180.02562 * 7 2 1 9 9 N 1.37169 * 120.00144 * 0.02562 * 7 2 1 10 10 C 1.34771 * 119.99716 * 180.02562 * 9 7 2 11 11 O 1.21598 * 120.00679 * 359.97438 * 10 9 7 12 12 N 1.34780 * 119.99931 * 179.97438 * 10 9 7 13 13 C 1.40145 * 120.00230 * 185.31297 * 12 10 9 14 14 C 1.38850 * 119.99530 * 213.28482 * 13 12 10 15 15 C 1.38074 * 120.00427 * 180.02562 * 14 13 12 16 16 C 1.38891 * 119.99030 * 359.97438 * 15 14 13 17 17 N 1.39909 * 119.99753 * 180.02562 * 16 15 14 18 18 C 1.38882 * 119.99346 * 0.27605 * 16 15 14 19 19 C 1.38065 * 119.99829 * 359.49373 * 18 16 15 20 20 H 0.97001 * 119.99775 * 0.02562 * 1 2 3 21 21 H 0.96996 * 120.00098 * 359.97438 * 9 7 2 22 22 H 0.97002 * 119.99881 * 5.31802 * 12 10 9 23 23 H 1.08001 * 119.99935 * 0.02562 * 14 13 12 24 24 H 1.07997 * 120.00018 * 179.97438 * 15 14 13 25 25 H 0.96994 * 120.00240 * 359.97438 * 17 16 15 26 26 H 0.96995 * 119.99726 * 179.73070 * 17 16 15 27 27 H 1.08003 * 119.99973 * 179.69824 * 18 16 15 28 28 H 1.07996 * 119.99797 * 180.22813 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 3.1025 1.6964 -1.2125 5 1 1.2837 2.7464 0.0006 6 1 3.1024 1.6964 1.2126 7 6 2.0091 -1.2028 0.0005 8 1 3.0891 -1.2028 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9971 -3.5578 0.0016 11 8 3.2130 -3.5579 0.0021 12 7 1.3232 -4.7251 0.0021 13 6 2.0193 -5.9361 0.1156 14 6 1.5486 -7.0706 -0.5319 15 6 2.2340 -8.2640 -0.4198 16 6 3.3947 -8.3292 0.3403 17 7 4.0896 -9.5382 0.4535 18 6 3.8624 -7.1955 0.9920 19 6 3.1794 -6.0013 0.8758 20 1 -0.4850 0.8401 -0.0004 21 1 0.3532 -2.3907 0.0005 22 1 0.3563 -4.7269 -0.0761 23 1 0.6463 -7.0197 -1.1232 24 1 1.8676 -9.1465 -0.9230 25 1 3.7606 -10.3309 0.0016 26 1 4.9023 -9.5829 0.9811 27 1 4.7623 -7.2473 1.5869 28 1 3.5452 -5.1188 1.3795 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217263927.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:38 Heat of formation + Delta-G solvation = -25.614310 kcal Electronic energy + Delta-G solvation = -14139.650486 eV Core-core repulsion = 11575.364651 eV Total energy + Delta-G solvation = -2564.285834 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.24199 -39.63571 -36.57077 -35.72346 -33.99922 -32.96263 -31.71449 -28.61317 -26.61952 -23.93448 -22.98782 -21.50942 -20.00679 -19.22357 -18.07156 -17.57008 -17.38378 -16.56591 -15.95160 -15.61909 -15.08276 -14.83766 -14.66868 -14.09117 -13.99107 -13.48347 -13.30541 -12.94369 -12.41245 -12.26268 -12.09455 -11.78514 -11.50030 -10.84947 -10.23680 -9.99768 -9.76232 -8.41781 -7.98141 -5.89976 0.58418 0.72261 1.43043 1.45313 1.54289 2.12909 2.33760 2.51383 3.06462 3.16744 3.32559 3.93308 4.11678 4.19816 4.57389 4.70385 4.79173 5.19595 5.32030 5.39717 5.44694 5.58150 5.78526 5.87862 6.19572 6.45995 6.72646 6.84449 7.15187 7.16744 7.69126 8.17014 8.77224 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.075378 B = 0.005588 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.373013 B = 5009.288936 C = 5303.036638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.018 4.018 3 Si 0.997 3.003 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.319 4.319 8 H 0.081 0.919 9 N -0.588 5.588 10 C 0.650 3.350 11 O -0.650 6.650 12 N -0.683 5.683 13 C 0.097 3.903 14 C -0.104 4.104 15 C -0.175 4.175 16 C 0.192 3.808 17 N -0.869 5.869 18 C -0.187 4.187 19 C -0.101 4.101 20 H 0.276 0.724 21 H 0.396 0.604 22 H 0.411 0.589 23 H 0.145 0.855 24 H 0.154 0.846 25 H 0.408 0.592 26 H 0.404 0.596 27 H 0.130 0.870 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.364 -16.409 0.241 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.217 4.217 3 Si 0.820 3.180 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.449 4.449 8 H 0.099 0.901 9 N -0.229 5.229 10 C 0.351 3.649 11 O -0.535 6.535 12 N -0.332 5.332 13 C 0.001 3.999 14 C -0.126 4.126 15 C -0.198 4.198 16 C 0.087 3.913 17 N -0.411 5.411 18 C -0.210 4.210 19 C -0.122 4.122 20 H 0.085 0.915 21 H 0.230 0.770 22 H 0.247 0.753 23 H 0.163 0.837 24 H 0.171 0.829 25 H 0.238 0.762 26 H 0.233 0.767 27 H 0.148 0.852 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.232 -16.117 0.252 16.273 hybrid contribution -0.371 0.880 0.084 0.959 sum 1.861 -15.237 0.336 15.354 Atomic orbital electron populations 1.69703 1.06739 1.29102 1.51446 1.26004 0.96650 1.02185 0.96840 0.84933 0.77615 0.76514 0.78900 1.19725 1.19572 1.19735 1.19529 0.92463 0.82982 1.49924 0.90131 1.40946 1.08801 1.03030 1.70138 1.16118 0.85414 0.81125 0.82226 1.90705 1.13542 1.86792 1.62450 1.42331 1.09882 1.02754 1.78190 1.17654 0.96183 0.85476 1.00633 1.20857 1.01755 0.91309 0.98664 1.20635 0.96224 0.98614 1.04324 1.17793 0.92115 0.87005 0.94398 1.42323 1.30645 1.08272 1.59811 1.20542 1.02798 0.91593 1.06112 1.20906 0.95905 0.97519 0.97904 0.91515 0.77032 0.75282 0.83721 0.82851 0.76239 0.76722 0.85204 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.36 13.05 21.65 0.28 -51.08 15 2 C -0.02 -0.99 5.50 84.90 0.47 -0.53 15 3 Si 1.00 43.98 29.55 68.60 2.03 46.00 15 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 5 H -0.27 -11.26 7.11 99.48 0.71 -10.56 15 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 7 C -0.32 -18.64 9.68 84.01 0.81 -17.83 15 8 H 0.08 4.97 7.16 -2.91 -0.02 4.95 15 9 N -0.59 -31.49 5.29 -320.71 -1.70 -33.19 15 10 C 0.65 33.32 8.25 179.05 1.48 34.80 15 11 O -0.65 -38.00 13.60 -4.02 -0.05 -38.05 15 12 N -0.68 -27.22 5.36 -317.03 -1.70 -28.92 15 13 C 0.10 3.57 6.28 38.11 0.24 3.81 15 14 C -0.10 -2.92 9.96 22.38 0.22 -2.70 15 15 C -0.17 -4.09 9.89 22.39 0.22 -3.86 15 16 C 0.19 4.68 6.76 38.16 0.26 4.94 15 17 N -0.87 -13.46 9.10 -51.25 -0.47 -13.92 15 18 C -0.19 -5.70 9.89 22.38 0.22 -5.48 15 19 C -0.10 -3.92 8.65 22.38 0.19 -3.73 15 20 H 0.28 14.32 8.31 -92.71 -0.77 13.55 15 21 H 0.40 20.03 7.92 -92.71 -0.73 19.29 15 22 H 0.41 13.46 8.83 -92.71 -0.82 12.64 15 23 H 0.15 3.25 8.06 -2.91 -0.02 3.23 15 24 H 0.15 2.46 8.06 -2.91 -0.02 2.43 15 25 H 0.41 4.24 8.84 -92.71 -0.82 3.42 15 26 H 0.40 5.06 8.84 -92.71 -0.82 4.24 15 27 H 0.13 3.43 8.06 -2.91 -0.02 3.41 15 28 H 0.10 4.55 6.41 -2.91 -0.02 4.53 15 Total: -1.00 -71.40 252.62 0.56 -70.84 By element: Atomic # 1 Polarization: 40.84 SS G_CDS: -1.95 Total: 38.89 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 4.11 Total: 9.43 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -3.58 Total: -127.11 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -0.05 Total: -38.05 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -71.40 0.56 -70.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217263927.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.227 kcal (2) G-P(sol) polarization free energy of solvation -71.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds