Wall clock time and date at job start Mon Mar 30 2020 03:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31478 * 1 3 3 Si 1.86800 * 119.99850 * 2 1 4 4 H 1.48496 * 109.47109 * 269.99768 * 3 2 1 5 5 H 1.48498 * 109.47346 * 30.00026 * 3 2 1 6 6 H 1.48507 * 109.46970 * 150.00143 * 3 2 1 7 7 C 1.38880 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99772 * 0.02562 * 7 2 1 9 9 N 1.37191 * 119.99962 * 179.97438 * 7 2 1 10 10 C 1.34779 * 120.00149 * 179.97438 * 9 7 2 11 11 O 1.21588 * 119.99540 * 0.02562 * 10 9 7 12 12 N 1.34773 * 120.00391 * 180.02562 * 10 9 7 13 13 C 1.46503 * 120.00355 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.47313 * 180.02562 * 13 12 10 15 15 C 1.38678 * 120.41675 * 270.25293 * 14 13 12 16 16 C 1.38627 * 118.41930 * 180.24221 * 15 14 13 17 17 C 1.38232 * 119.16085 * 359.75178 * 16 15 14 18 18 N 1.31857 * 120.76541 * 359.97438 * 17 16 15 19 19 C 1.31889 * 121.72235 * 0.02562 * 18 17 16 20 20 H 0.96994 * 119.99725 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00177 * 0.02562 * 9 7 2 22 22 H 0.97000 * 119.99935 * 0.02562 * 12 10 9 23 23 H 1.09001 * 109.46632 * 59.99997 * 13 12 10 24 24 H 1.08996 * 109.46728 * 299.99991 * 13 12 10 25 25 H 1.07994 * 120.78944 * 359.96926 * 15 14 13 26 26 H 1.07997 * 120.42083 * 179.72800 * 16 15 14 27 27 H 1.07999 * 119.61954 * 180.02562 * 17 16 15 28 28 H 1.08002 * 119.61237 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 2.4963 2.0464 -1.4000 5 1 1.4462 2.6527 0.7000 6 1 3.5464 1.4402 0.7000 7 6 2.0092 -1.2027 -0.0005 8 1 1.4692 -2.1380 -0.0014 9 7 3.3811 -1.2027 -0.0011 10 6 4.0551 -2.3699 -0.0011 11 8 3.4471 -3.4228 -0.0011 12 7 5.4028 -2.3699 -0.0011 13 6 6.1354 -3.6386 -0.0016 14 6 7.6169 -3.3632 -0.0009 15 6 8.3067 -3.2289 -1.1964 16 6 9.6698 -2.9811 -1.1474 17 6 10.2907 -2.8716 0.0827 18 7 9.6018 -2.9997 1.1997 19 6 8.3042 -3.2357 1.1911 20 1 -0.4849 0.8400 0.0004 21 1 3.8661 -0.3627 -0.0007 22 1 5.8878 -1.5299 -0.0007 23 1 5.8720 -4.2097 -0.8919 24 1 5.8720 -4.2105 0.8881 25 1 7.7950 -3.3197 -2.1431 26 1 10.2394 -2.8752 -2.0588 27 1 11.3522 -2.6782 0.1295 28 1 7.7736 -3.3349 2.1265 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264007.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:02 Heat of formation + Delta-G solvation = 10.804650 kcal Electronic energy + Delta-G solvation = -14017.775942 eV Core-core repulsion = 11455.069353 eV Total energy + Delta-G solvation = -2562.706590 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.37021 -38.79643 -35.04541 -33.82699 -32.42637 -31.74326 -31.05207 -26.58898 -24.24333 -23.71537 -21.95683 -19.96401 -18.63062 -17.45841 -16.93973 -16.53372 -15.37645 -15.02749 -14.51133 -14.37728 -13.82641 -13.60701 -13.22555 -13.02534 -12.80770 -12.48626 -12.05227 -11.59355 -11.17936 -10.57315 -10.04752 -9.91223 -9.64621 -9.57381 -9.36305 -8.91636 -8.49164 -8.10801 -6.19746 -3.73121 0.86627 1.09179 3.08289 3.12138 3.19766 3.49349 3.94806 4.17950 4.18923 4.26976 4.64770 4.66517 4.83261 4.87028 5.26727 5.35410 5.44768 5.54105 5.73658 5.90558 5.95408 6.19376 6.50825 7.07892 7.31171 7.77959 7.88649 8.36103 8.83893 9.02928 9.53991 9.95840 10.94050 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.044687 B = 0.005947 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.431126 B = 4707.511769 C = 5040.929428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.038 3.962 3 Si 0.880 3.120 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.272 1.272 7 C -0.291 4.291 8 H 0.119 0.881 9 N -0.612 5.612 10 C 0.667 3.333 11 O -0.609 6.609 12 N -0.761 5.761 13 C 0.190 3.810 14 C -0.150 4.150 15 C -0.058 4.058 16 C -0.176 4.176 17 C 0.097 3.903 18 N -0.488 5.488 19 C 0.116 3.884 20 H 0.271 0.729 21 H 0.369 0.631 22 H 0.386 0.614 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.137 0.863 26 H 0.135 0.865 27 H 0.154 0.846 28 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.621 -2.208 -1.799 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.164 4.164 3 Si 0.707 3.293 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.198 1.198 7 C -0.420 4.420 8 H 0.137 0.863 9 N -0.255 5.255 10 C 0.367 3.633 11 O -0.490 6.490 12 N -0.419 5.419 13 C 0.065 3.935 14 C -0.152 4.152 15 C -0.084 4.084 16 C -0.196 4.196 17 C -0.060 4.060 18 N -0.196 5.196 19 C -0.041 4.041 20 H 0.082 0.918 21 H 0.201 0.799 22 H 0.218 0.782 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.155 0.845 26 H 0.153 0.847 27 H 0.171 0.829 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 19.243 -2.966 -0.994 19.495 hybrid contribution 0.416 1.731 -0.875 1.984 sum 19.658 -1.235 -1.868 19.785 Atomic orbital electron populations 1.69633 1.05388 1.27131 1.51158 1.24910 0.95452 0.97639 0.98368 0.86673 0.79623 0.84376 0.78622 1.19885 1.20350 1.19813 1.19277 0.78151 0.96616 1.47987 0.86301 1.41350 1.07275 1.04413 1.72479 1.15685 0.80393 0.85106 0.82077 1.90788 1.67266 1.30554 1.60432 1.45041 1.05257 1.07626 1.83979 1.19735 0.84100 0.86609 1.03067 1.21102 0.97413 1.02255 0.94426 1.21630 0.94087 0.94186 0.98546 1.22163 0.95492 1.02269 0.99683 1.22808 1.00227 0.95111 0.87903 1.67748 1.08444 1.11993 1.31416 1.22817 0.89867 0.93596 0.97856 0.91834 0.79859 0.78161 0.91070 0.90907 0.84494 0.84737 0.82866 0.82446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.96 55.49 0.77 -25.80 15 2 C 0.04 1.05 5.50 -17.47 -0.10 0.96 15 3 Si 0.88 19.86 27.74 -169.99 -4.71 15.15 15 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 5 H -0.28 -6.31 7.11 56.52 0.40 -5.90 15 6 H -0.27 -5.64 6.52 56.52 0.37 -5.27 15 7 C -0.29 -8.38 10.16 -14.92 -0.15 -8.54 15 8 H 0.12 3.89 7.39 -52.48 -0.39 3.50 15 9 N -0.61 -14.86 5.10 -15.34 -0.08 -14.94 15 10 C 0.67 15.44 8.52 -86.92 -0.74 14.70 15 11 O -0.61 -16.66 15.92 5.29 0.08 -16.58 15 12 N -0.76 -12.91 5.55 -66.42 -0.37 -13.28 15 13 C 0.19 2.71 5.82 -5.19 -0.03 2.68 15 14 C -0.15 -1.73 5.27 -104.48 -0.55 -2.28 15 15 C -0.06 -0.58 9.86 -39.28 -0.39 -0.97 15 16 C -0.18 -1.53 10.11 -39.44 -0.40 -1.93 15 17 C 0.10 0.93 11.18 -17.54 -0.20 0.73 15 18 N -0.49 -5.84 10.36 -13.25 -0.14 -5.98 15 19 C 0.12 1.36 10.86 -17.55 -0.19 1.17 15 20 H 0.27 7.48 8.31 -40.82 -0.34 7.14 15 21 H 0.37 7.91 5.78 -40.82 -0.24 7.67 15 22 H 0.39 5.63 8.48 -40.82 -0.35 5.28 15 23 H 0.07 1.04 8.10 -51.93 -0.42 0.62 15 24 H 0.07 1.07 8.09 -51.93 -0.42 0.65 15 25 H 0.14 1.21 8.06 -52.49 -0.42 0.78 15 26 H 0.13 0.80 8.06 -52.49 -0.42 0.38 15 27 H 0.15 1.03 8.06 -52.49 -0.42 0.61 15 28 H 0.16 1.67 8.06 -52.49 -0.42 1.25 15 LS Contribution 255.02 15.07 3.84 3.84 Total: -1.00 -34.00 255.02 -6.01 -40.01 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -2.67 Total: 11.07 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -2.74 Total: 6.51 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.19 Total: -60.00 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.08 Total: -16.58 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.71 Total: 15.15 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -34.00 -6.01 -40.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264007.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.811 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds