Wall clock time and date at job start Mon Mar 30 2020 03:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31478 * 1 3 3 Si 1.86800 * 119.99850 * 2 1 4 4 H 1.48496 * 109.47109 * 269.99768 * 3 2 1 5 5 H 1.48498 * 109.47346 * 30.00026 * 3 2 1 6 6 H 1.48507 * 109.46970 * 150.00143 * 3 2 1 7 7 C 1.38880 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99772 * 0.02562 * 7 2 1 9 9 N 1.37191 * 119.99962 * 179.97438 * 7 2 1 10 10 C 1.34779 * 120.00149 * 179.97438 * 9 7 2 11 11 O 1.21588 * 119.99540 * 0.02562 * 10 9 7 12 12 N 1.34773 * 120.00391 * 180.02562 * 10 9 7 13 13 C 1.46503 * 120.00355 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.47313 * 180.02562 * 13 12 10 15 15 C 1.38678 * 120.41675 * 270.25293 * 14 13 12 16 16 C 1.38627 * 118.41930 * 180.24221 * 15 14 13 17 17 C 1.38232 * 119.16085 * 359.75178 * 16 15 14 18 18 N 1.31857 * 120.76541 * 359.97438 * 17 16 15 19 19 C 1.31889 * 121.72235 * 0.02562 * 18 17 16 20 20 H 0.96994 * 119.99725 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00177 * 0.02562 * 9 7 2 22 22 H 0.97000 * 119.99935 * 0.02562 * 12 10 9 23 23 H 1.09001 * 109.46632 * 59.99997 * 13 12 10 24 24 H 1.08996 * 109.46728 * 299.99991 * 13 12 10 25 25 H 1.07994 * 120.78944 * 359.96926 * 15 14 13 26 26 H 1.07997 * 120.42083 * 179.72800 * 16 15 14 27 27 H 1.07999 * 119.61954 * 180.02562 * 17 16 15 28 28 H 1.08002 * 119.61237 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 2.4963 2.0464 -1.4000 5 1 1.4462 2.6527 0.7000 6 1 3.5464 1.4402 0.7000 7 6 2.0092 -1.2027 -0.0005 8 1 1.4692 -2.1380 -0.0014 9 7 3.3811 -1.2027 -0.0011 10 6 4.0551 -2.3699 -0.0011 11 8 3.4471 -3.4228 -0.0011 12 7 5.4028 -2.3699 -0.0011 13 6 6.1354 -3.6386 -0.0016 14 6 7.6169 -3.3632 -0.0009 15 6 8.3067 -3.2289 -1.1964 16 6 9.6698 -2.9811 -1.1474 17 6 10.2907 -2.8716 0.0827 18 7 9.6018 -2.9997 1.1997 19 6 8.3042 -3.2357 1.1911 20 1 -0.4849 0.8400 0.0004 21 1 3.8661 -0.3627 -0.0007 22 1 5.8878 -1.5299 -0.0007 23 1 5.8720 -4.2097 -0.8919 24 1 5.8720 -4.2105 0.8881 25 1 7.7950 -3.3197 -2.1431 26 1 10.2394 -2.8752 -2.0588 27 1 11.3522 -2.6782 0.1295 28 1 7.7736 -3.3349 2.1265 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264007.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:02 Heat of formation + Delta-G solvation = -15.752893 kcal Electronic energy + Delta-G solvation = -14018.927564 eV Core-core repulsion = 11455.069353 eV Total energy + Delta-G solvation = -2563.858211 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.28653 -40.52924 -36.54639 -35.74502 -33.82633 -33.21006 -32.24915 -27.96535 -26.03324 -24.50169 -22.93165 -21.79362 -20.63573 -18.98992 -17.93530 -17.40516 -17.09077 -16.34644 -16.06304 -15.85685 -15.12052 -14.85389 -14.67124 -14.09840 -14.08583 -13.93549 -13.86082 -12.97787 -12.48142 -12.40060 -11.99689 -11.55216 -11.14494 -10.76421 -10.44607 -10.31608 -10.03275 -9.92024 -8.34473 -5.95487 0.05470 0.31998 1.31061 1.37750 1.44806 2.17334 2.26980 2.29055 2.91146 3.22857 3.46907 3.74822 3.79503 3.92324 4.05089 4.10247 4.52226 4.65696 4.77104 4.87480 5.18006 5.32750 5.44390 5.60937 5.75751 5.85854 6.31177 6.85139 6.94662 7.00280 7.56908 8.05861 8.83458 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.044687 B = 0.005947 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.431126 B = 4707.511769 C = 5040.929428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.018 4.018 3 Si 0.966 3.034 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.238 1.238 7 C -0.311 4.311 8 H 0.058 0.942 9 N -0.611 5.611 10 C 0.668 3.332 11 O -0.657 6.657 12 N -0.736 5.736 13 C 0.192 3.808 14 C -0.156 4.156 15 C -0.060 4.060 16 C -0.166 4.166 17 C 0.094 3.906 18 N -0.512 5.512 19 C 0.106 3.894 20 H 0.277 0.723 21 H 0.387 0.613 22 H 0.403 0.597 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.150 0.850 26 H 0.169 0.831 27 H 0.183 0.817 28 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.979 -0.337 -2.475 23.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.216 4.216 3 Si 0.787 3.213 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.161 1.161 7 C -0.441 4.441 8 H 0.076 0.924 9 N -0.257 5.257 10 C 0.369 3.631 11 O -0.542 6.542 12 N -0.394 5.394 13 C 0.068 3.932 14 C -0.159 4.159 15 C -0.087 4.087 16 C -0.185 4.185 17 C -0.062 4.062 18 N -0.221 5.221 19 C -0.050 4.050 20 H 0.087 0.913 21 H 0.222 0.778 22 H 0.238 0.762 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.167 0.833 26 H 0.186 0.814 27 H 0.200 0.800 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 22.674 -1.101 -1.667 22.761 hybrid contribution -0.577 1.025 -0.691 1.364 sum 22.097 -0.075 -2.358 22.222 Atomic orbital electron populations 1.69817 1.07849 1.28908 1.51809 1.25946 0.96438 1.02333 0.96840 0.85349 0.79188 0.77131 0.79680 1.18302 1.20161 1.16138 1.18853 0.80214 0.95038 1.49986 0.92353 1.41025 1.05747 1.05605 1.73310 1.15956 0.82086 0.84049 0.81025 1.90757 1.69009 1.32256 1.62146 1.44817 1.02985 1.09692 1.81944 1.19787 0.85797 0.85115 1.02537 1.20765 0.95418 1.04338 0.95367 1.21864 0.94946 0.93534 0.98335 1.22498 0.94873 1.00444 1.00715 1.23392 1.01533 0.93683 0.87634 1.67781 1.08435 1.13017 1.32876 1.22852 0.90195 0.93985 0.98000 0.91350 0.77782 0.76170 0.91450 0.91698 0.83265 0.81397 0.80003 0.82425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.63 13.96 21.65 0.30 -57.33 15 2 C -0.02 -1.02 5.50 84.90 0.47 -0.55 15 3 Si 0.97 39.83 27.74 68.60 1.90 41.73 15 4 H -0.26 -10.08 7.11 99.48 0.71 -9.38 15 5 H -0.28 -11.33 7.11 99.48 0.71 -10.62 15 6 H -0.24 -8.39 6.52 99.48 0.65 -7.75 15 7 C -0.31 -18.53 10.16 84.01 0.85 -17.67 15 8 H 0.06 4.10 7.39 -2.91 -0.02 4.08 15 9 N -0.61 -29.58 5.10 -320.70 -1.63 -31.22 15 10 C 0.67 31.18 8.52 179.05 1.53 32.71 15 11 O -0.66 -37.31 15.92 -3.99 -0.06 -37.37 15 12 N -0.74 -24.17 5.55 -482.30 -2.68 -26.84 15 13 C 0.19 5.35 5.82 85.63 0.50 5.85 15 14 C -0.16 -3.36 5.27 -19.77 -0.10 -3.46 15 15 C -0.06 -1.03 9.86 22.47 0.22 -0.81 15 16 C -0.17 -2.22 10.11 22.36 0.23 -1.99 15 17 C 0.09 1.48 11.18 84.69 0.95 2.43 15 18 N -0.51 -11.15 10.36 -195.83 -2.03 -13.18 15 19 C 0.11 2.34 10.86 84.67 0.92 3.26 15 20 H 0.28 15.52 8.31 -92.71 -0.77 14.75 15 21 H 0.39 15.66 5.78 -92.71 -0.54 15.13 15 22 H 0.40 10.76 8.48 -92.71 -0.79 9.97 15 23 H 0.07 1.95 8.10 -2.39 -0.02 1.93 15 24 H 0.06 1.92 8.09 -2.39 -0.02 1.90 15 25 H 0.15 2.16 8.06 -2.91 -0.02 2.14 15 26 H 0.17 1.12 8.06 -2.91 -0.02 1.10 15 27 H 0.18 1.68 8.06 -2.91 -0.02 1.66 15 28 H 0.16 3.26 8.06 -2.91 -0.02 3.24 15 Total: -1.00 -77.47 255.02 1.17 -76.30 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -0.18 Total: 28.15 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 5.55 Total: 19.75 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -6.04 Total: -128.57 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.06 Total: -37.37 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 1.90 Total: 41.73 kcal Total: -77.47 1.17 -76.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264007.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.546 kcal (2) G-P(sol) polarization free energy of solvation -77.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds