Wall clock time and date at job start Mon Mar 30 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31475 * 1 3 3 Si 1.86795 * 119.99896 * 2 1 4 4 H 1.48503 * 109.47283 * 269.99965 * 3 2 1 5 5 H 1.48500 * 109.47205 * 30.00046 * 3 2 1 6 6 H 1.48501 * 109.47099 * 150.00087 * 3 2 1 7 7 C 1.38878 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00216 * 180.02562 * 7 2 1 9 9 N 1.37202 * 119.99630 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99616 * 180.02562 * 9 7 2 11 11 O 1.21584 * 119.99970 * 359.97438 * 10 9 7 12 12 N 1.34771 * 119.99489 * 180.02562 * 10 9 7 13 13 C 1.46505 * 119.99622 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47064 * 179.97438 * 13 12 10 15 15 C 1.38650 * 120.78792 * 269.71459 * 14 13 12 16 16 C 1.38207 * 119.16129 * 179.79528 * 15 14 13 17 17 N 1.31868 * 120.76474 * 0.49389 * 16 15 14 18 18 C 1.31874 * 121.72157 * 359.73831 * 17 16 15 19 19 C 1.38199 * 120.77057 * 0.02562 * 18 17 16 20 20 H 0.96998 * 120.00321 * 0.02562 * 1 2 3 21 21 H 0.97003 * 120.00008 * 0.02562 * 9 7 2 22 22 H 0.96996 * 120.00772 * 359.97438 * 12 10 9 23 23 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 24 24 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 25 25 H 1.07998 * 120.42060 * 0.02562 * 15 14 13 26 26 H 1.07997 * 119.61581 * 180.20726 * 16 15 14 27 27 H 1.07998 * 119.61429 * 180.02562 * 18 17 16 28 28 H 1.07991 * 120.42226 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 2.4962 2.0464 -1.4001 5 1 1.4461 2.6526 0.7000 6 1 3.5463 1.4402 0.7000 7 6 2.0092 -1.2027 -0.0005 8 1 3.0891 -1.2027 -0.0001 9 7 1.3231 -2.3909 -0.0005 10 6 1.9971 -3.5581 -0.0005 11 8 3.2129 -3.5580 -0.0010 12 7 1.3232 -4.7252 -0.0011 13 6 2.0557 -5.9940 -0.0005 14 6 1.0764 -7.1394 -0.0006 15 6 0.6192 -7.6824 1.1904 16 6 -0.2819 -8.7296 1.1511 17 7 -0.6988 -9.2179 -0.0007 18 6 -0.2817 -8.7294 -1.1525 19 6 0.6157 -7.6792 -1.1918 20 1 -0.4850 0.8400 -0.0004 21 1 0.3531 -2.3908 -0.0005 22 1 0.3532 -4.7253 -0.0011 23 1 2.6830 -6.0517 -0.8900 24 1 2.6817 -6.0517 0.8900 25 1 0.9602 -7.2897 2.1369 26 1 -0.6454 -9.1559 2.0744 27 1 -0.6457 -9.1552 -2.0759 28 1 0.9538 -7.2839 -2.1381 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264153.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:45 Heat of formation + Delta-G solvation = 3.582959 kcal Electronic energy + Delta-G solvation = -13954.980592 eV Core-core repulsion = 11391.960847 eV Total energy + Delta-G solvation = -2563.019746 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.27198 -38.63415 -35.07947 -33.79453 -32.04454 -31.29926 -30.93644 -26.71964 -24.41224 -23.53932 -21.92384 -19.95771 -17.93502 -17.55008 -16.45408 -16.25463 -15.60713 -15.05697 -14.44837 -14.32194 -13.85863 -13.73085 -13.32384 -13.07461 -12.47812 -12.19954 -11.58093 -11.45644 -11.04739 -10.35219 -10.15681 -9.88929 -9.59233 -9.53064 -9.25272 -8.87768 -8.39129 -7.89284 -6.31242 -3.73626 1.03911 1.07479 3.24451 3.30520 3.35704 3.60666 4.00547 4.30095 4.35475 4.39643 4.59316 4.70635 5.02716 5.05090 5.38036 5.49942 5.57979 5.74779 5.76942 5.90688 6.07199 6.33996 6.59325 7.19606 7.57668 7.68333 7.84911 8.40680 8.77735 9.25329 9.68007 10.16394 10.88247 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.062113 B = 0.005164 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.681184 B = 5420.519413 C = 5577.823626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 0.931 3.069 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.285 4.285 8 H 0.102 0.898 9 N -0.586 5.586 10 C 0.657 3.343 11 O -0.627 6.627 12 N -0.759 5.759 13 C 0.185 3.815 14 C -0.053 4.053 15 C -0.155 4.155 16 C 0.094 3.906 17 N -0.488 5.488 18 C 0.094 3.906 19 C -0.155 4.155 20 H 0.269 0.731 21 H 0.391 0.609 22 H 0.388 0.612 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.137 0.863 26 H 0.155 0.845 27 H 0.155 0.845 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.287 -13.980 0.012 14.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.758 3.242 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.415 4.415 8 H 0.120 0.880 9 N -0.227 5.227 10 C 0.357 3.643 11 O -0.510 6.510 12 N -0.417 5.417 13 C 0.060 3.940 14 C -0.061 4.061 15 C -0.175 4.175 16 C -0.063 4.063 17 N -0.197 5.197 18 C -0.063 4.063 19 C -0.175 4.175 20 H 0.078 0.922 21 H 0.224 0.776 22 H 0.221 0.779 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.155 0.845 26 H 0.173 0.827 27 H 0.173 0.827 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.881 -14.457 0.018 14.578 hybrid contribution -0.055 1.559 -0.010 1.560 sum -1.935 -12.898 0.008 13.042 Atomic orbital electron populations 1.69638 1.05755 1.27765 1.52227 1.25168 0.95688 0.99362 0.98140 0.85845 0.79082 0.81007 0.78235 1.20587 1.21073 1.19570 1.19571 0.92971 0.81464 1.47512 0.88034 1.40993 1.08694 1.03020 1.69954 1.15879 0.85585 0.80271 0.82515 1.90740 1.11990 1.86383 1.61848 1.44945 1.08748 1.03930 1.84110 1.19803 0.91568 0.79702 1.02908 1.20532 0.96211 0.96124 0.93263 1.22174 0.98568 0.97700 0.99076 1.22761 0.93874 0.93400 0.96250 1.67663 1.24308 1.29070 0.98645 1.22760 0.93897 0.93381 0.96251 1.22171 0.98570 0.97691 0.99079 0.92160 0.77572 0.77942 0.91098 0.91113 0.84469 0.82737 0.82739 0.84469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.33 13.05 55.49 0.72 -24.60 15 2 C 0.02 0.45 5.50 -17.47 -0.10 0.36 15 3 Si 0.93 21.45 29.55 -169.99 -5.02 16.42 15 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 15 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.29 -8.09 9.68 -14.91 -0.14 -8.24 15 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 15 9 N -0.59 -15.14 5.29 -15.34 -0.08 -15.22 15 10 C 0.66 15.85 8.52 -86.92 -0.74 15.11 15 11 O -0.63 -17.35 15.92 5.29 0.08 -17.27 15 12 N -0.76 -13.75 5.55 -66.41 -0.37 -14.12 15 13 C 0.19 2.80 5.85 -5.19 -0.03 2.77 15 14 C -0.05 -0.65 5.29 -104.32 -0.55 -1.20 15 15 C -0.15 -1.73 9.82 -39.44 -0.39 -2.12 15 16 C 0.09 1.01 11.18 -17.55 -0.20 0.82 15 17 N -0.49 -5.92 10.36 -13.25 -0.14 -6.06 15 18 C 0.09 1.01 11.18 -17.55 -0.20 0.82 15 19 C -0.15 -1.73 9.82 -39.44 -0.39 -2.12 15 20 H 0.27 7.09 8.31 -40.82 -0.34 6.75 15 21 H 0.39 9.69 7.91 -40.82 -0.32 9.36 15 22 H 0.39 6.26 8.48 -40.82 -0.35 5.91 15 23 H 0.07 1.10 8.10 -51.93 -0.42 0.68 15 24 H 0.07 1.10 8.10 -51.93 -0.42 0.68 15 25 H 0.14 1.35 8.06 -52.49 -0.42 0.93 15 26 H 0.16 1.25 8.06 -52.49 -0.42 0.82 15 27 H 0.16 1.25 8.06 -52.49 -0.42 0.82 15 28 H 0.14 1.35 8.06 -52.49 -0.42 0.93 15 LS Contribution 258.18 15.07 3.89 3.89 Total: -1.00 -32.69 258.18 -6.35 -39.04 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -2.71 Total: 11.70 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -2.73 Total: 6.20 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.14 Total: -59.99 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.08 Total: -17.27 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.69 -6.35 -39.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264153.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.627 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds