Wall clock time and date at job start Mon Mar 30 2020 03:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31481 * 1 3 3 Si 1.86794 * 120.00014 * 2 1 4 4 H 1.48492 * 109.47417 * 240.00335 * 3 2 1 5 5 H 1.48505 * 109.47433 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46993 * 120.00327 * 3 2 1 7 7 C 1.38877 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00125 * 179.97438 * 7 2 1 9 9 N 1.37198 * 119.99729 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99547 * 180.02562 * 9 7 2 11 11 O 1.21579 * 120.00226 * 0.02562 * 10 9 7 12 12 N 1.34774 * 119.99692 * 180.02562 * 10 9 7 13 13 C 1.46504 * 119.99987 * 180.02562 * 12 10 9 14 14 C 1.50707 * 109.46935 * 179.97438 * 13 12 10 15 15 C 1.38227 * 119.62059 * 95.01845 * 14 13 12 16 16 C 1.38627 * 119.15702 * 179.74122 * 15 14 13 17 17 C 1.38669 * 118.42389 * 0.47826 * 16 15 14 18 18 C 1.38186 * 119.16143 * 359.49762 * 17 16 15 19 19 N 1.31856 * 119.61137 * 274.99275 * 14 13 12 20 20 H 0.96994 * 119.99621 * 359.97438 * 1 2 3 21 21 H 0.96996 * 120.00164 * 0.02562 * 9 7 2 22 22 H 0.97003 * 120.00414 * 359.97438 * 12 10 9 23 23 H 1.08997 * 109.47679 * 59.99430 * 13 12 10 24 24 H 1.09003 * 109.46652 * 299.99390 * 13 12 10 25 25 H 1.07998 * 120.41916 * 359.95342 * 15 14 13 26 26 H 1.08008 * 120.78688 * 180.22921 * 16 15 14 27 27 H 1.08002 * 120.42244 * 179.78279 * 17 16 15 28 28 H 1.07996 * 119.61757 * 180.25243 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.1025 1.6964 -1.2125 5 1 1.2838 2.7465 0.0006 6 1 3.1026 1.6963 1.2125 7 6 2.0092 -1.2027 -0.0005 8 1 3.0892 -1.2027 -0.0010 9 7 1.3231 -2.3908 -0.0005 10 6 1.9971 -3.5580 -0.0005 11 8 3.2128 -3.5581 -0.0001 12 7 1.3232 -4.7252 -0.0011 13 6 2.0556 -5.9940 -0.0005 14 6 1.0762 -7.1394 -0.0006 15 6 0.7126 -7.7272 -1.1976 16 6 -0.1849 -8.7837 -1.1861 17 6 -0.6930 -9.2048 0.0335 18 6 -0.2828 -8.5688 1.1896 19 7 0.5766 -7.5695 1.1413 20 1 -0.4849 0.8400 0.0004 21 1 0.3532 -2.3908 -0.0005 22 1 0.3531 -4.7252 -0.0011 23 1 2.6817 -6.0518 0.8899 24 1 2.6829 -6.0517 -0.8901 25 1 1.1251 -7.3702 -2.1297 26 1 -0.4843 -9.2648 -2.1056 27 1 -1.3970 -10.0226 0.0796 28 1 -0.6707 -8.8934 2.1438 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264155.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:39 Heat of formation + Delta-G solvation = 6.195661 kcal Electronic energy + Delta-G solvation = -13965.072140 eV Core-core repulsion = 11402.165690 eV Total energy + Delta-G solvation = -2562.906451 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.29168 -38.51994 -34.64404 -33.62147 -32.51329 -31.50240 -30.69601 -26.59114 -24.34587 -23.59046 -21.91132 -19.86368 -17.86047 -17.49624 -16.63063 -16.30962 -15.40394 -15.02055 -14.41463 -14.18493 -13.79706 -13.46395 -13.20427 -13.02472 -12.57306 -12.17526 -11.63435 -11.39029 -10.98078 -10.35312 -10.08825 -10.00257 -9.50659 -9.45016 -9.26484 -8.76170 -8.27556 -7.81987 -6.24995 -3.66963 0.94524 1.17395 3.31110 3.33803 3.37243 3.56457 4.07139 4.24486 4.39362 4.48921 4.66952 4.72194 4.94701 5.03130 5.41775 5.45162 5.60805 5.75053 5.90291 6.04266 6.13317 6.21352 6.58027 7.30015 7.64368 7.75704 7.93644 8.48416 8.85590 9.31870 9.75718 10.24664 10.94665 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.062425 B = 0.005209 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.431808 B = 5373.818322 C = 5532.892024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 0.932 3.068 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.284 4.284 8 H 0.101 0.899 9 N -0.587 5.587 10 C 0.659 3.341 11 O -0.627 6.627 12 N -0.755 5.755 13 C 0.198 3.802 14 C 0.119 3.881 15 C -0.154 4.154 16 C -0.078 4.078 17 C -0.175 4.175 18 C 0.097 3.903 19 N -0.469 5.469 20 H 0.268 0.732 21 H 0.391 0.609 22 H 0.387 0.613 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.138 0.862 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.113 -16.459 -1.820 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.759 3.241 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.414 4.414 8 H 0.119 0.881 9 N -0.228 5.228 10 C 0.360 3.640 11 O -0.510 6.510 12 N -0.414 5.414 13 C 0.072 3.928 14 C -0.019 4.019 15 C -0.175 4.175 16 C -0.104 4.104 17 C -0.195 4.195 18 C -0.060 4.060 19 N -0.178 5.178 20 H 0.078 0.922 21 H 0.224 0.776 22 H 0.220 0.780 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.156 0.844 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.857 -15.834 -1.042 16.124 hybrid contribution -1.021 0.303 -0.784 1.322 sum -3.878 -15.531 -1.826 16.112 Atomic orbital electron populations 1.69639 1.05740 1.27762 1.52415 1.25159 0.95682 0.99314 0.98271 0.85908 0.78599 0.80715 0.78869 1.20112 1.21166 1.20095 1.19526 0.92944 0.81505 1.47376 0.88089 1.40971 1.08669 1.02994 1.70163 1.15851 0.85559 0.80230 0.82342 1.90732 1.11984 1.86402 1.61854 1.44854 1.08704 1.03884 1.83943 1.19705 0.91062 0.79011 1.03000 1.21469 0.95826 0.96185 0.88462 1.22088 0.98765 0.97061 0.99576 1.21601 0.94993 0.95407 0.98435 1.22164 1.01757 1.01848 0.93768 1.22805 0.93227 0.91485 0.98513 1.67570 1.08917 1.11863 1.29459 0.92187 0.77598 0.78038 0.90581 0.90728 0.84395 0.84802 0.84892 0.82734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.87 13.05 55.49 0.72 -25.14 15 2 C 0.02 0.44 5.50 -17.47 -0.10 0.34 15 3 Si 0.93 21.85 29.55 -169.99 -5.02 16.82 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 15 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.28 -8.23 9.68 -14.91 -0.14 -8.37 15 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 15 9 N -0.59 -15.66 5.29 -15.34 -0.08 -15.74 15 10 C 0.66 16.59 8.52 -86.92 -0.74 15.85 15 11 O -0.63 -17.88 15.92 5.30 0.08 -17.80 15 12 N -0.76 -14.78 5.55 -66.41 -0.37 -15.15 15 13 C 0.20 3.33 5.98 -5.19 -0.03 3.30 15 14 C 0.12 1.67 6.15 -82.58 -0.51 1.17 15 15 C -0.15 -1.76 9.72 -39.44 -0.38 -2.15 15 16 C -0.08 -0.73 10.18 -39.28 -0.40 -1.13 15 17 C -0.18 -1.57 10.11 -39.44 -0.40 -1.97 15 18 C 0.10 1.07 11.18 -17.55 -0.20 0.87 15 19 N -0.47 -6.73 10.27 -9.47 -0.10 -6.83 15 20 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 21 H 0.39 10.02 7.91 -40.82 -0.32 9.70 15 22 H 0.39 6.87 8.48 -40.82 -0.35 6.52 15 23 H 0.08 1.38 8.14 -51.93 -0.42 0.96 15 24 H 0.07 1.20 8.04 -51.93 -0.42 0.79 15 25 H 0.14 1.38 8.06 -52.49 -0.42 0.95 15 26 H 0.13 0.87 8.06 -52.48 -0.42 0.44 15 27 H 0.13 0.79 8.06 -52.49 -0.42 0.37 15 28 H 0.16 1.27 8.06 -52.49 -0.42 0.85 15 LS Contribution 258.26 15.07 3.89 3.89 Total: -1.00 -33.58 258.26 -6.48 -40.06 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -2.71 Total: 11.99 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -2.90 Total: 7.90 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.18 Total: -62.87 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.08 Total: -17.80 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.58 -6.48 -40.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264155.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.258 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds