Wall clock time and date at job start Mon Mar 30 2020 03:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31481 * 1 3 3 Si 1.86794 * 120.00014 * 2 1 4 4 H 1.48492 * 109.47417 * 240.00335 * 3 2 1 5 5 H 1.48505 * 109.47433 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46993 * 120.00327 * 3 2 1 7 7 C 1.38877 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00125 * 179.97438 * 7 2 1 9 9 N 1.37198 * 119.99729 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99547 * 180.02562 * 9 7 2 11 11 O 1.21579 * 120.00226 * 0.02562 * 10 9 7 12 12 N 1.34774 * 119.99692 * 180.02562 * 10 9 7 13 13 C 1.46504 * 119.99987 * 180.02562 * 12 10 9 14 14 C 1.50707 * 109.46935 * 179.97438 * 13 12 10 15 15 C 1.38227 * 119.62059 * 95.01845 * 14 13 12 16 16 C 1.38627 * 119.15702 * 179.74122 * 15 14 13 17 17 C 1.38669 * 118.42389 * 0.47826 * 16 15 14 18 18 C 1.38186 * 119.16143 * 359.49762 * 17 16 15 19 19 N 1.31856 * 119.61137 * 274.99275 * 14 13 12 20 20 H 0.96994 * 119.99621 * 359.97438 * 1 2 3 21 21 H 0.96996 * 120.00164 * 0.02562 * 9 7 2 22 22 H 0.97003 * 120.00414 * 359.97438 * 12 10 9 23 23 H 1.08997 * 109.47679 * 59.99430 * 13 12 10 24 24 H 1.09003 * 109.46652 * 299.99390 * 13 12 10 25 25 H 1.07998 * 120.41916 * 359.95342 * 15 14 13 26 26 H 1.08008 * 120.78688 * 180.22921 * 16 15 14 27 27 H 1.08002 * 120.42244 * 179.78279 * 17 16 15 28 28 H 1.07996 * 119.61757 * 180.25243 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.1025 1.6964 -1.2125 5 1 1.2838 2.7465 0.0006 6 1 3.1026 1.6963 1.2125 7 6 2.0092 -1.2027 -0.0005 8 1 3.0892 -1.2027 -0.0010 9 7 1.3231 -2.3908 -0.0005 10 6 1.9971 -3.5580 -0.0005 11 8 3.2128 -3.5581 -0.0001 12 7 1.3232 -4.7252 -0.0011 13 6 2.0556 -5.9940 -0.0005 14 6 1.0762 -7.1394 -0.0006 15 6 0.7126 -7.7272 -1.1976 16 6 -0.1849 -8.7837 -1.1861 17 6 -0.6930 -9.2048 0.0335 18 6 -0.2828 -8.5688 1.1896 19 7 0.5766 -7.5695 1.1413 20 1 -0.4849 0.8400 0.0004 21 1 0.3532 -2.3908 -0.0005 22 1 0.3531 -4.7252 -0.0011 23 1 2.6817 -6.0518 0.8899 24 1 2.6829 -6.0517 -0.8901 25 1 1.1251 -7.3702 -2.1297 26 1 -0.4843 -9.2648 -2.1056 27 1 -1.3970 -10.0226 0.0796 28 1 -0.6707 -8.8934 2.1438 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264155.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:39 Heat of formation + Delta-G solvation = -19.256086 kcal Electronic energy + Delta-G solvation = -13966.175811 eV Core-core repulsion = 11402.165690 eV Total energy + Delta-G solvation = -2564.010121 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.27090 -40.40315 -36.36793 -35.56350 -33.44630 -33.26679 -32.14936 -28.04531 -26.25547 -24.41679 -22.96532 -21.77377 -19.98278 -19.16117 -17.61905 -17.29488 -16.89108 -16.45396 -16.06799 -15.97377 -15.32148 -14.95694 -14.54517 -14.18631 -13.85315 -13.57296 -13.43776 -12.88919 -12.52513 -12.38946 -12.09098 -11.52846 -11.02915 -10.81585 -10.38937 -10.15929 -10.02094 -9.80218 -8.38941 -5.88008 0.06824 0.37542 1.43607 1.45906 1.55286 2.15021 2.36839 2.50179 2.97453 3.24614 3.31259 3.76704 4.01157 4.05654 4.19139 4.23947 4.56210 4.59233 4.77752 4.85953 5.23847 5.26923 5.41972 5.66141 5.76495 5.79369 6.44931 6.83371 7.05130 7.17322 7.71815 8.19688 8.80396 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.062425 B = 0.005209 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.431808 B = 5373.818322 C = 5532.892024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.021 4.021 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.318 4.318 8 H 0.081 0.919 9 N -0.595 5.595 10 C 0.658 3.342 11 O -0.665 6.665 12 N -0.737 5.737 13 C 0.200 3.800 14 C 0.093 3.907 15 C -0.156 4.156 16 C -0.075 4.075 17 C -0.159 4.159 18 C 0.083 3.917 19 N -0.507 5.507 20 H 0.274 0.726 21 H 0.394 0.606 22 H 0.398 0.602 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.148 0.852 26 H 0.170 0.830 27 H 0.172 0.828 28 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.444 -17.566 -2.459 18.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.219 4.219 3 Si 0.821 3.179 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.448 4.448 8 H 0.099 0.901 9 N -0.236 5.236 10 C 0.359 3.641 11 O -0.551 6.551 12 N -0.394 5.394 13 C 0.075 3.925 14 C -0.044 4.044 15 C -0.177 4.177 16 C -0.100 4.100 17 C -0.178 4.178 18 C -0.075 4.075 19 N -0.217 5.217 20 H 0.084 0.916 21 H 0.227 0.773 22 H 0.232 0.768 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.166 0.834 26 H 0.187 0.813 27 H 0.189 0.811 28 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.226 -16.986 -1.685 17.585 hybrid contribution -0.689 0.495 -0.571 1.023 sum -4.915 -16.492 -2.256 17.356 Atomic orbital electron populations 1.69718 1.06791 1.28973 1.51913 1.26013 0.96648 1.02214 0.97014 0.84923 0.77578 0.76466 0.78927 1.19566 1.19666 1.19796 1.19550 0.92448 0.83077 1.49730 0.90120 1.40945 1.08665 1.03132 1.70897 1.16072 0.85207 0.81148 0.81676 1.90689 1.13777 1.87205 1.63403 1.44692 1.09205 1.03351 1.82189 1.19739 0.91813 0.78885 1.02085 1.21016 0.97075 0.96454 0.89829 1.22227 0.99095 0.97562 0.98791 1.22044 0.93597 0.94263 1.00134 1.22601 1.00898 1.01599 0.92716 1.23295 0.92680 0.90888 1.00596 1.67433 1.10462 1.13724 1.30046 0.91634 0.77276 0.76782 0.92736 0.90374 0.83397 0.81270 0.81060 0.80540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.54 13.05 21.65 0.28 -52.26 15 2 C -0.02 -1.15 5.50 84.90 0.47 -0.69 15 3 Si 1.00 44.53 29.55 68.60 2.03 46.56 15 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 15 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 7 C -0.32 -18.89 9.68 84.01 0.81 -18.08 15 8 H 0.08 5.03 7.16 -2.91 -0.02 5.01 15 9 N -0.60 -32.59 5.29 -320.71 -1.70 -34.29 15 10 C 0.66 34.17 8.52 179.05 1.53 35.70 15 11 O -0.66 -39.35 15.92 -3.96 -0.06 -39.41 15 12 N -0.74 -29.56 5.55 -482.29 -2.68 -32.23 15 13 C 0.20 6.93 5.98 85.63 0.51 7.44 15 14 C 0.09 2.61 6.15 42.55 0.26 2.87 15 15 C -0.16 -3.30 9.72 22.36 0.22 -3.08 15 16 C -0.07 -1.12 10.18 22.47 0.23 -0.89 15 17 C -0.16 -2.24 10.11 22.36 0.23 -2.01 15 18 C 0.08 1.64 11.18 84.67 0.95 2.59 15 19 N -0.51 -14.32 10.27 -183.88 -1.89 -16.21 15 20 H 0.27 14.52 8.31 -92.71 -0.77 13.75 15 21 H 0.39 20.63 7.91 -92.71 -0.73 19.90 15 22 H 0.40 14.31 8.48 -92.71 -0.79 13.52 15 23 H 0.05 2.10 8.14 -2.39 -0.02 2.08 15 24 H 0.08 2.61 8.04 -2.39 -0.02 2.59 15 25 H 0.15 2.71 8.06 -2.91 -0.02 2.69 15 26 H 0.17 1.34 8.06 -2.91 -0.02 1.31 15 27 H 0.17 1.11 8.06 -2.91 -0.02 1.09 15 28 H 0.18 2.49 8.06 -2.91 -0.02 2.46 15 Total: -1.00 -73.60 258.26 0.86 -72.74 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -0.32 Total: 31.25 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: 5.20 Total: 23.85 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -5.98 Total: -134.99 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.06 Total: -39.41 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -73.60 0.86 -72.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264155.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.488 kcal (2) G-P(sol) polarization free energy of solvation -73.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds