Wall clock time and date at job start Mon Mar 30 2020 03:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38101 * 119.57797 * 2 1 4 4 C 1.38810 * 119.31579 * 180.02562 * 3 2 1 5 5 C 1.38390 * 118.49396 * 0.27635 * 4 3 2 6 6 C 1.39019 * 119.10134 * 359.43553 * 5 4 3 7 7 N 1.39357 * 119.69782 * 180.30045 * 6 5 4 8 8 C 1.34775 * 119.99979 * 174.89439 * 7 6 5 9 9 O 1.21583 * 120.00122 * 5.09295 * 8 7 6 10 10 N 1.34777 * 120.00097 * 185.10058 * 8 7 6 11 11 C 1.37162 * 120.00361 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99843 * 359.97438 * 11 10 8 13 13 C 1.38883 * 120.00425 * 179.97438 * 11 10 8 14 14 N 1.31474 * 119.99782 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00328 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46970 * 60.00329 * 15 13 11 17 17 H 1.48503 * 109.47259 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47405 * 300.00392 * 15 13 11 19 19 N 1.31916 * 119.57519 * 179.97438 * 2 1 3 20 20 H 1.09002 * 109.47640 * 89.99840 * 1 2 3 21 21 H 1.08998 * 109.47152 * 210.00319 * 1 2 3 22 22 H 1.09000 * 109.47204 * 329.99835 * 1 2 3 23 23 H 1.08003 * 120.34394 * 359.97438 * 3 2 1 24 24 H 1.07995 * 120.75413 * 179.97438 * 4 3 2 25 25 H 1.08000 * 120.45238 * 179.70872 * 5 4 3 26 26 H 0.97005 * 120.00463 * 354.89061 * 7 6 5 27 27 H 0.97000 * 120.00037 * 359.97438 * 10 8 7 28 28 H 0.97005 * 119.99796 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2010 0.0000 4 6 3.5767 1.1947 -0.0005 5 6 4.2314 -0.0246 -0.0069 6 6 3.4810 -1.1949 -0.0006 7 7 4.1275 -2.4295 -0.0006 8 6 3.4107 -3.5654 0.1094 9 8 2.1957 -3.5195 0.1153 10 7 4.0406 -4.7524 0.2130 11 6 3.3111 -5.9085 0.3254 12 1 2.2319 -5.8677 0.3314 13 6 3.9602 -7.1318 0.4316 14 7 5.2740 -7.1815 0.4248 15 14 2.9668 -8.7061 0.5854 16 1 2.0994 -8.8629 -0.6097 17 1 3.8891 -9.8660 0.6826 18 1 2.1220 -8.6413 1.8050 19 7 2.1581 -1.1473 0.0005 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 1.6473 2.1356 -0.0004 24 1 4.1332 2.1202 -0.0010 25 1 5.3105 -0.0664 -0.0123 26 1 5.0934 -2.4713 -0.0798 27 1 5.0099 -4.7892 0.2080 28 1 5.7274 -8.0358 0.4993 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264277.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:27 Heat of formation + Delta-G solvation = 17.951738 kcal Electronic energy + Delta-G solvation = -14297.120141 eV Core-core repulsion = 11734.723472 eV Total energy + Delta-G solvation = -2562.396669 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.20945 -38.38735 -34.69533 -33.67981 -32.42312 -31.41495 -30.35196 -27.19384 -24.97532 -22.83661 -21.90797 -20.00548 -18.02324 -17.48628 -16.50845 -15.83563 -15.27749 -14.72520 -14.50881 -13.83289 -13.63919 -13.37189 -12.94669 -12.64757 -12.27484 -11.97659 -11.66964 -11.47342 -11.06560 -10.40301 -10.23659 -10.16879 -9.44980 -9.32851 -9.32141 -8.28770 -7.96425 -7.69073 -6.34635 -3.75662 1.47138 1.69733 3.26730 3.28356 3.30545 3.48424 4.02608 4.29571 4.50422 4.71061 4.96644 5.32936 5.34747 5.39666 5.44351 5.75323 5.81089 5.83579 5.89195 6.23597 6.34312 6.45239 6.76575 7.27190 7.46717 7.63165 8.21085 8.55244 8.81921 9.23276 9.62222 10.13678 10.84571 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.053798 B = 0.006395 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.343164 B = 4377.168226 C = 4879.124074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.160 3.840 3 C -0.231 4.231 4 C -0.045 4.045 5 C -0.236 4.236 6 C 0.403 3.597 7 N -0.674 5.674 8 C 0.637 3.363 9 O -0.564 6.564 10 N -0.581 5.581 11 C -0.284 4.284 12 H 0.103 0.897 13 C 0.018 3.982 14 N -0.910 5.910 15 Si 0.934 3.066 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 N -0.470 5.470 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.126 0.874 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.405 0.595 27 H 0.390 0.610 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.790 14.035 -0.801 14.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.020 3.980 3 C -0.253 4.253 4 C -0.071 4.071 5 C -0.261 4.261 6 C 0.169 3.831 7 N -0.320 5.320 8 C 0.337 3.663 9 O -0.440 6.440 10 N -0.222 5.222 11 C -0.414 4.414 12 H 0.121 0.879 13 C -0.183 4.183 14 N -0.552 5.552 15 Si 0.761 3.239 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 N -0.186 5.186 20 H 0.093 0.907 21 H 0.098 0.902 22 H 0.088 0.912 23 H 0.144 0.856 24 H 0.148 0.852 25 H 0.148 0.852 26 H 0.240 0.760 27 H 0.224 0.776 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.202 12.895 -0.755 13.103 hybrid contribution 1.327 -0.103 0.024 1.331 sum -0.874 12.792 -0.731 12.843 Atomic orbital electron populations 1.20687 0.89262 1.03161 1.02819 1.21219 0.96889 0.87615 0.92262 1.21684 0.94828 0.98844 1.09953 1.21175 0.94234 0.97135 0.94541 1.21350 1.00547 0.91943 1.12219 1.18255 0.88762 0.84814 0.91264 1.43014 1.09992 1.03645 1.75372 1.16029 0.85987 0.80157 0.84099 1.90870 1.10832 1.84498 1.57831 1.41044 1.08929 1.03306 1.68946 1.19542 0.92670 0.82198 1.46970 0.87886 1.25188 0.95894 0.99239 0.97940 1.69631 1.07023 1.26970 1.51579 0.85874 0.78809 0.80237 0.79008 1.19990 1.21068 1.19988 1.67675 1.07212 1.28148 1.15538 0.90664 0.90168 0.91170 0.85587 0.85216 0.85226 0.76024 0.77639 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 10.17 36.00 0.37 -1.00 15 2 C 0.16 2.66 6.78 -82.61 -0.56 2.10 15 3 C -0.23 -3.06 9.73 -39.42 -0.38 -3.45 15 4 C -0.04 -0.56 10.17 -39.31 -0.40 -0.96 15 5 C -0.24 -3.40 9.94 -39.24 -0.39 -3.79 15 6 C 0.40 7.69 7.42 -154.73 -1.15 6.54 15 7 N -0.67 -13.34 5.39 -15.82 -0.09 -13.42 15 8 C 0.64 16.04 8.48 -86.92 -0.74 15.31 15 9 O -0.56 -16.29 14.18 5.29 0.08 -16.21 15 10 N -0.58 -15.12 5.29 -15.35 -0.08 -15.20 15 11 C -0.28 -8.09 9.68 -14.93 -0.14 -8.23 15 12 H 0.10 3.07 7.16 -52.49 -0.38 2.69 15 13 C 0.02 0.49 5.50 -17.47 -0.10 0.39 15 14 N -0.91 -25.14 13.05 55.49 0.72 -24.41 15 15 Si 0.93 21.51 29.55 -169.99 -5.02 16.49 15 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 17 H -0.29 -6.41 7.11 56.52 0.40 -6.01 15 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 19 N -0.47 -9.85 7.80 -8.61 -0.07 -9.92 15 20 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 22 H 0.07 0.71 8.08 -51.93 -0.42 0.29 15 23 H 0.13 1.27 8.06 -52.48 -0.42 0.84 15 24 H 0.13 1.15 8.06 -52.49 -0.42 0.73 15 25 H 0.13 1.47 8.06 -52.49 -0.42 1.05 15 26 H 0.40 6.38 8.72 -40.82 -0.36 6.02 15 27 H 0.39 9.57 7.92 -40.82 -0.32 9.25 15 28 H 0.27 7.09 8.31 -40.82 -0.34 6.76 15 LS Contribution 255.09 15.07 3.84 3.84 Total: -1.00 -33.94 255.09 -6.83 -40.77 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -2.72 Total: 11.16 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -3.49 Total: 6.90 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: 0.49 Total: -62.95 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.08 Total: -16.21 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -33.94 -6.83 -40.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264277.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.724 kcal (2) G-P(sol) polarization free energy of solvation -33.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds