Wall clock time and date at job start Mon Mar 30 2020 03:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38101 * 119.57797 * 2 1 4 4 C 1.38810 * 119.31579 * 180.02562 * 3 2 1 5 5 C 1.38390 * 118.49396 * 0.27635 * 4 3 2 6 6 C 1.39019 * 119.10134 * 359.43553 * 5 4 3 7 7 N 1.39357 * 119.69782 * 180.30045 * 6 5 4 8 8 C 1.34775 * 119.99979 * 174.89439 * 7 6 5 9 9 O 1.21583 * 120.00122 * 5.09295 * 8 7 6 10 10 N 1.34777 * 120.00097 * 185.10058 * 8 7 6 11 11 C 1.37162 * 120.00361 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99843 * 359.97438 * 11 10 8 13 13 C 1.38883 * 120.00425 * 179.97438 * 11 10 8 14 14 N 1.31474 * 119.99782 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00328 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46970 * 60.00329 * 15 13 11 17 17 H 1.48503 * 109.47259 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47405 * 300.00392 * 15 13 11 19 19 N 1.31916 * 119.57519 * 179.97438 * 2 1 3 20 20 H 1.09002 * 109.47640 * 89.99840 * 1 2 3 21 21 H 1.08998 * 109.47152 * 210.00319 * 1 2 3 22 22 H 1.09000 * 109.47204 * 329.99835 * 1 2 3 23 23 H 1.08003 * 120.34394 * 359.97438 * 3 2 1 24 24 H 1.07995 * 120.75413 * 179.97438 * 4 3 2 25 25 H 1.08000 * 120.45238 * 179.70872 * 5 4 3 26 26 H 0.97005 * 120.00463 * 354.89061 * 7 6 5 27 27 H 0.97000 * 120.00037 * 359.97438 * 10 8 7 28 28 H 0.97005 * 119.99796 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2010 0.0000 4 6 3.5767 1.1947 -0.0005 5 6 4.2314 -0.0246 -0.0069 6 6 3.4810 -1.1949 -0.0006 7 7 4.1275 -2.4295 -0.0006 8 6 3.4107 -3.5654 0.1094 9 8 2.1957 -3.5195 0.1153 10 7 4.0406 -4.7524 0.2130 11 6 3.3111 -5.9085 0.3254 12 1 2.2319 -5.8677 0.3314 13 6 3.9602 -7.1318 0.4316 14 7 5.2740 -7.1815 0.4248 15 14 2.9668 -8.7061 0.5854 16 1 2.0994 -8.8629 -0.6097 17 1 3.8891 -9.8660 0.6826 18 1 2.1220 -8.6413 1.8050 19 7 2.1581 -1.1473 0.0005 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 1.6473 2.1356 -0.0004 24 1 4.1332 2.1202 -0.0010 25 1 5.3105 -0.0664 -0.0123 26 1 5.0934 -2.4713 -0.0798 27 1 5.0099 -4.7892 0.2080 28 1 5.7274 -8.0358 0.4993 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264277.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:27 Heat of formation + Delta-G solvation = -6.500435 kcal Electronic energy + Delta-G solvation = -14298.180467 eV Core-core repulsion = 11734.723472 eV Total energy + Delta-G solvation = -2563.456995 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.60997 -40.09093 -36.39834 -35.60222 -33.59057 -33.34084 -31.82394 -28.40830 -26.91112 -24.23111 -23.13646 -21.71946 -20.06180 -19.14727 -18.07222 -16.97934 -16.62898 -16.46304 -16.29562 -15.59040 -15.10285 -14.89558 -14.63191 -13.74933 -13.52323 -13.46298 -13.03638 -12.93299 -12.72212 -12.43057 -12.10989 -11.71566 -11.35911 -11.08564 -10.58153 -10.03407 -9.83577 -9.03849 -8.43464 -5.91766 0.28027 0.57007 1.41342 1.44038 1.52255 1.91594 2.32674 2.42120 3.01490 3.32362 3.45270 3.95545 3.99842 4.20897 4.34453 4.49146 4.72697 4.79709 4.84175 5.12401 5.24015 5.36175 5.40027 5.55822 5.70224 6.05434 6.33488 6.68561 7.12877 7.33655 7.71581 8.17680 8.75515 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.053798 B = 0.006395 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.343164 B = 4377.168226 C = 4879.124074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.125 3.875 3 C -0.209 4.209 4 C -0.039 4.039 5 C -0.220 4.220 6 C 0.357 3.643 7 N -0.666 5.666 8 C 0.640 3.360 9 O -0.609 6.609 10 N -0.588 5.588 11 C -0.318 4.318 12 H 0.078 0.922 13 C -0.017 4.017 14 N -0.928 5.928 15 Si 0.997 3.003 16 H -0.273 1.273 17 H -0.269 1.269 18 H -0.273 1.273 19 N -0.532 5.532 20 H 0.082 0.918 21 H 0.048 0.952 22 H 0.108 0.892 23 H 0.168 0.832 24 H 0.180 0.820 25 H 0.163 0.837 26 H 0.422 0.578 27 H 0.395 0.605 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.061 16.189 -0.802 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.013 4.013 3 C -0.231 4.231 4 C -0.064 4.064 5 C -0.244 4.244 6 C 0.125 3.875 7 N -0.315 5.315 8 C 0.341 3.659 9 O -0.489 6.489 10 N -0.231 5.231 11 C -0.448 4.448 12 H 0.096 0.904 13 C -0.215 4.215 14 N -0.569 5.569 15 Si 0.820 3.180 16 H -0.198 1.198 17 H -0.194 1.194 18 H -0.198 1.198 19 N -0.248 5.248 20 H 0.101 0.899 21 H 0.067 0.933 22 H 0.126 0.874 23 H 0.185 0.815 24 H 0.198 0.802 25 H 0.180 0.820 26 H 0.260 0.740 27 H 0.229 0.771 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.437 15.122 -0.762 15.209 hybrid contribution 1.093 -0.547 0.012 1.222 sum -0.344 14.575 -0.749 14.598 Atomic orbital electron populations 1.20751 0.88010 1.03453 1.03388 1.21762 0.98134 0.87930 0.93511 1.22161 0.95597 0.98977 1.06348 1.21804 0.94202 0.98112 0.92312 1.21726 1.02051 0.90843 1.09806 1.18690 0.89096 0.85381 0.94365 1.42606 1.10540 1.02768 1.75606 1.16254 0.85702 0.81053 0.82925 1.90821 1.12981 1.85588 1.59501 1.40979 1.08939 1.03328 1.69835 1.19499 0.92029 0.83883 1.49380 0.90355 1.25987 0.97033 1.01678 0.96846 1.69698 1.07960 1.28028 1.51231 0.84937 0.77618 0.76570 0.78852 1.19786 1.19394 1.19799 1.67457 1.08918 1.31244 1.17192 0.89947 0.93268 0.87384 0.81459 0.80221 0.81980 0.73998 0.77071 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.61 10.17 71.23 0.72 -1.88 15 2 C 0.13 4.05 6.78 42.51 0.29 4.34 15 3 C -0.21 -4.75 9.73 22.37 0.22 -4.53 15 4 C -0.04 -0.78 10.17 22.44 0.23 -0.56 15 5 C -0.22 -5.72 9.94 22.49 0.22 -5.50 15 6 C 0.36 13.58 7.42 132.92 0.99 14.56 15 7 N -0.67 -26.96 5.39 -322.23 -1.74 -28.70 15 8 C 0.64 33.74 8.48 179.05 1.52 35.26 15 9 O -0.61 -37.24 14.18 -3.98 -0.06 -37.30 15 10 N -0.59 -31.87 5.29 -320.73 -1.70 -33.57 15 11 C -0.32 -18.82 9.68 84.01 0.81 -18.01 15 12 H 0.08 4.93 7.16 -2.91 -0.02 4.91 15 13 C -0.02 -0.92 5.50 84.90 0.47 -0.46 15 14 N -0.93 -51.39 13.05 21.66 0.28 -51.10 15 15 Si 1.00 44.38 29.55 68.60 2.03 46.41 15 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 19 N -0.53 -22.81 7.80 -181.14 -1.41 -24.22 15 20 H 0.08 1.99 8.14 -2.39 -0.02 1.97 15 21 H 0.05 1.57 8.14 -2.39 -0.02 1.55 15 22 H 0.11 1.92 8.08 -2.39 -0.02 1.90 15 23 H 0.17 2.38 8.06 -2.91 -0.02 2.36 15 24 H 0.18 1.91 8.06 -2.91 -0.02 1.89 15 25 H 0.16 3.03 8.06 -2.91 -0.02 3.01 15 26 H 0.42 13.37 8.72 -92.70 -0.81 12.56 15 27 H 0.40 20.02 7.92 -92.71 -0.73 19.29 15 28 H 0.28 14.34 8.31 -92.70 -0.77 13.57 15 Total: -1.00 -77.89 255.09 2.53 -75.36 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -0.34 Total: 29.90 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: 5.47 Total: 23.23 kcal Atomic # 7 Polarization: -133.03 SS G_CDS: -4.57 Total: -137.59 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.06 Total: -37.30 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -77.89 2.53 -75.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264277.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.856 kcal (2) G-P(sol) polarization free energy of solvation -77.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds