Wall clock time and date at job start Mon Mar 30 2020 03:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38387 * 120.45070 * 2 1 4 4 C 1.38805 * 118.49638 * 179.71326 * 3 2 1 5 5 C 1.38099 * 119.31192 * 0.58493 * 4 3 2 6 6 N 1.31912 * 120.84833 * 359.67727 * 5 4 3 7 7 C 1.32386 * 121.63454 * 0.02620 * 6 5 4 8 8 N 1.39359 * 119.69447 * 180.02562 * 7 6 5 9 9 C 1.34778 * 120.00474 * 359.97438 * 8 7 6 10 10 O 1.21574 * 119.99678 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99985 * 180.02562 * 9 8 7 12 12 C 1.37168 * 119.99660 * 180.02562 * 11 9 8 13 13 H 1.07997 * 120.00308 * 359.97438 * 12 11 9 14 14 C 1.38894 * 119.99659 * 179.97438 * 12 11 9 15 15 N 1.31468 * 120.00172 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99588 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47185 * 90.00023 * 16 14 12 18 18 H 1.48499 * 109.47109 * 209.99873 * 16 14 12 19 19 H 1.48500 * 109.47626 * 329.99932 * 16 14 12 20 20 H 1.09002 * 109.47152 * 269.72094 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.72195 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.72176 * 1 2 3 23 23 H 1.08001 * 120.74696 * 359.97438 * 3 2 1 24 24 H 1.07998 * 120.34223 * 180.28596 * 4 3 2 25 25 H 1.08006 * 119.57627 * 179.70196 * 5 4 3 26 26 H 0.97007 * 120.00006 * 179.97438 * 8 7 6 27 27 H 0.96994 * 120.00274 * 359.97438 * 11 9 8 28 28 H 0.96995 * 119.99451 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1930 0.0000 4 6 3.5956 1.1457 0.0061 5 6 4.2303 -0.0808 -0.0003 6 7 3.5353 -1.2020 -0.0058 7 6 2.2115 -1.1984 -0.0058 8 7 1.5178 -2.4071 -0.0112 9 6 2.1946 -3.5726 -0.0168 10 8 3.4103 -3.5695 -0.0167 11 7 1.5236 -4.7414 -0.0225 12 6 2.2125 -5.9276 -0.0276 13 1 3.2925 -5.9249 -0.0276 14 6 1.5210 -7.1321 -0.0330 15 7 0.2064 -7.1355 -0.0325 16 14 2.4592 -8.7474 -0.0407 17 1 2.7083 -9.1819 1.3573 18 1 1.6590 -9.7812 -0.7452 19 1 3.7561 -8.5634 -0.7404 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3633 -0.8875 -0.5182 22 1 -0.3633 0.8925 -0.5095 23 1 1.6880 2.1394 -0.0004 24 1 4.1726 2.0586 0.0109 25 1 5.3095 -0.1226 -0.0005 26 1 0.5477 -2.4096 -0.0109 27 1 0.5537 -4.7439 -0.0222 28 1 -0.2764 -7.9767 -0.0359 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264493.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:35 Heat of formation + Delta-G solvation = 19.287212 kcal Electronic energy + Delta-G solvation = -14391.153286 eV Core-core repulsion = 11828.814528 eV Total energy + Delta-G solvation = -2562.338758 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.31453 -38.33030 -34.62001 -33.84969 -33.02287 -31.29428 -29.97429 -27.01486 -25.04044 -23.07350 -21.74011 -19.98590 -18.07088 -17.94731 -16.61316 -15.46696 -15.12488 -14.77949 -14.50220 -13.98750 -13.54894 -13.50655 -12.94116 -12.69372 -12.53529 -12.43834 -11.50038 -11.40938 -11.10151 -10.36681 -10.33495 -10.17646 -9.45277 -9.32535 -9.28693 -8.29067 -7.96606 -7.65721 -6.35019 -3.75903 1.46035 1.67810 3.24291 3.28749 3.32982 3.49179 4.04150 4.30234 4.51090 4.78526 4.95151 5.16046 5.19927 5.39219 5.40584 5.60946 5.61125 5.75429 5.91134 6.10590 6.27923 6.44890 6.75601 7.23955 7.45751 7.62996 8.20204 8.53944 8.80846 9.23114 9.61641 10.13162 10.84291 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055800 B = 0.006551 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.672372 B = 4272.947184 C = 4759.474384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.197 4.197 3 C -0.049 4.049 4 C -0.228 4.228 5 C 0.129 3.871 6 N -0.468 5.468 7 C 0.400 3.600 8 N -0.672 5.672 9 C 0.637 3.363 10 O -0.564 6.564 11 N -0.581 5.581 12 C -0.284 4.284 13 H 0.104 0.896 14 C 0.018 3.982 15 N -0.910 5.910 16 Si 0.933 3.067 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.270 1.270 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.129 0.871 24 H 0.127 0.873 25 H 0.152 0.848 26 H 0.404 0.596 27 H 0.390 0.610 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.330 14.151 0.066 14.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.204 4.204 3 C -0.075 4.075 4 C -0.250 4.250 5 C -0.031 4.031 6 N -0.182 5.182 7 C 0.166 3.834 8 N -0.320 5.320 9 C 0.337 3.663 10 O -0.440 6.440 11 N -0.223 5.223 12 C -0.413 4.413 13 H 0.122 0.878 14 C -0.183 4.183 15 N -0.552 5.552 16 Si 0.760 3.240 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.195 1.195 20 H 0.088 0.912 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.147 0.853 24 H 0.145 0.855 25 H 0.169 0.831 26 H 0.240 0.760 27 H 0.223 0.777 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.042 12.948 0.051 12.948 hybrid contribution -1.110 -0.021 0.010 1.111 sum -1.069 12.927 0.061 12.971 Atomic orbital electron populations 1.20606 0.90613 1.02658 1.02246 1.20197 0.96968 0.92483 1.10763 1.21099 0.93959 0.96895 0.95594 1.21883 0.95085 0.99289 1.08766 1.22684 1.00099 0.87003 0.93283 1.67874 1.05630 1.29997 1.14652 1.18133 0.88643 0.84612 0.92056 1.43085 1.09444 1.03645 1.75821 1.16034 0.86117 0.79999 0.84143 1.90872 1.10779 1.84803 1.57556 1.41046 1.08707 1.02938 1.69562 1.19600 0.93072 0.81242 1.47410 0.87808 1.25190 0.95729 0.99426 0.97931 1.69634 1.05879 1.27831 1.51833 0.85811 0.79129 0.80764 0.78289 1.20518 1.21029 1.19470 0.91240 0.91817 0.91328 0.85306 0.85535 0.83122 0.76003 0.77672 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 9.59 36.01 0.35 -0.78 15 2 C -0.20 -2.86 5.91 -104.28 -0.62 -3.48 15 3 C -0.05 -0.62 9.85 -39.32 -0.39 -1.00 15 4 C -0.23 -2.92 10.11 -39.42 -0.40 -3.31 15 5 C 0.13 2.07 11.18 -17.57 -0.20 1.87 15 6 N -0.47 -9.77 7.87 -12.37 -0.10 -9.87 15 7 C 0.40 7.62 7.41 -154.73 -1.15 6.48 15 8 N -0.67 -13.39 5.30 -15.82 -0.08 -13.47 15 9 C 0.64 16.09 8.48 -86.92 -0.74 15.35 15 10 O -0.56 -16.36 14.16 5.30 0.08 -16.28 15 11 N -0.58 -15.14 5.29 -15.34 -0.08 -15.22 15 12 C -0.28 -8.08 9.68 -14.92 -0.14 -8.22 15 13 H 0.10 3.10 7.16 -52.49 -0.38 2.72 15 14 C 0.02 0.48 5.50 -17.46 -0.10 0.39 15 15 N -0.91 -25.07 13.05 55.49 0.72 -24.35 15 16 Si 0.93 21.49 29.55 -169.99 -5.02 16.47 15 17 H -0.28 -6.36 7.11 56.52 0.40 -5.95 15 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 20 H 0.07 0.69 8.14 -51.93 -0.42 0.26 15 21 H 0.06 0.68 6.56 -51.93 -0.34 0.34 15 22 H 0.07 0.60 8.09 -51.93 -0.42 0.18 15 23 H 0.13 1.16 8.06 -52.49 -0.42 0.74 15 24 H 0.13 1.20 8.06 -52.49 -0.42 0.78 15 25 H 0.15 2.03 8.06 -52.48 -0.42 1.61 15 26 H 0.40 6.53 6.69 -40.82 -0.27 6.26 15 27 H 0.39 9.57 7.91 -40.82 -0.32 9.25 15 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 LS Contribution 251.30 15.07 3.79 3.79 Total: -1.00 -33.95 251.30 -6.64 -40.58 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -2.56 Total: 11.06 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: -3.38 Total: 7.29 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: 0.46 Total: -62.91 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.08 Total: -16.28 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -33.95 -6.64 -40.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264493.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.869 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds