Wall clock time and date at job start Mon Mar 30 2020 03:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38387 * 120.45070 * 2 1 4 4 C 1.38805 * 118.49638 * 179.71326 * 3 2 1 5 5 C 1.38099 * 119.31192 * 0.58493 * 4 3 2 6 6 N 1.31912 * 120.84833 * 359.67727 * 5 4 3 7 7 C 1.32386 * 121.63454 * 0.02620 * 6 5 4 8 8 N 1.39359 * 119.69447 * 180.02562 * 7 6 5 9 9 C 1.34778 * 120.00474 * 359.97438 * 8 7 6 10 10 O 1.21574 * 119.99678 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99985 * 180.02562 * 9 8 7 12 12 C 1.37168 * 119.99660 * 180.02562 * 11 9 8 13 13 H 1.07997 * 120.00308 * 359.97438 * 12 11 9 14 14 C 1.38894 * 119.99659 * 179.97438 * 12 11 9 15 15 N 1.31468 * 120.00172 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99588 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47185 * 90.00023 * 16 14 12 18 18 H 1.48499 * 109.47109 * 209.99873 * 16 14 12 19 19 H 1.48500 * 109.47626 * 329.99932 * 16 14 12 20 20 H 1.09002 * 109.47152 * 269.72094 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.72195 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.72176 * 1 2 3 23 23 H 1.08001 * 120.74696 * 359.97438 * 3 2 1 24 24 H 1.07998 * 120.34223 * 180.28596 * 4 3 2 25 25 H 1.08006 * 119.57627 * 179.70196 * 5 4 3 26 26 H 0.97007 * 120.00006 * 179.97438 * 8 7 6 27 27 H 0.96994 * 120.00274 * 359.97438 * 11 9 8 28 28 H 0.96995 * 119.99451 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1930 0.0000 4 6 3.5956 1.1457 0.0061 5 6 4.2303 -0.0808 -0.0003 6 7 3.5353 -1.2020 -0.0058 7 6 2.2115 -1.1984 -0.0058 8 7 1.5178 -2.4071 -0.0112 9 6 2.1946 -3.5726 -0.0168 10 8 3.4103 -3.5695 -0.0167 11 7 1.5236 -4.7414 -0.0225 12 6 2.2125 -5.9276 -0.0276 13 1 3.2925 -5.9249 -0.0276 14 6 1.5210 -7.1321 -0.0330 15 7 0.2064 -7.1355 -0.0325 16 14 2.4592 -8.7474 -0.0407 17 1 2.7083 -9.1819 1.3573 18 1 1.6590 -9.7812 -0.7452 19 1 3.7561 -8.5634 -0.7404 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3633 -0.8875 -0.5182 22 1 -0.3633 0.8925 -0.5095 23 1 1.6880 2.1394 -0.0004 24 1 4.1726 2.0586 0.0109 25 1 5.3095 -0.1226 -0.0005 26 1 0.5477 -2.4096 -0.0109 27 1 0.5537 -4.7439 -0.0222 28 1 -0.2764 -7.9767 -0.0359 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264493.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:35 Heat of formation + Delta-G solvation = -4.900431 kcal Electronic energy + Delta-G solvation = -14392.202141 eV Core-core repulsion = 11828.814528 eV Total energy + Delta-G solvation = -2563.387613 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.70872 -40.04812 -36.32371 -35.66330 -34.28945 -33.29114 -31.31711 -28.10180 -26.98096 -24.50416 -22.89598 -21.70465 -20.06503 -19.54103 -18.22440 -16.93955 -16.42412 -16.36222 -16.21969 -15.57003 -15.03850 -14.95031 -14.81337 -13.77044 -13.58523 -13.48118 -13.32270 -12.96022 -12.44244 -12.38820 -12.10407 -11.85775 -11.42338 -11.08887 -10.46686 -10.03598 -9.84091 -9.00233 -8.43645 -5.91899 0.27542 0.54739 1.41735 1.42296 1.54483 1.90980 2.32745 2.42232 3.02892 3.32617 3.54764 3.90687 3.96745 4.15646 4.25227 4.38869 4.69459 4.82645 4.88765 5.16486 5.23435 5.37054 5.40131 5.55026 5.67695 6.03008 6.31991 6.67266 7.12615 7.31400 7.70047 8.16787 8.75591 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055800 B = 0.006551 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.672372 B = 4272.947184 C = 4759.474384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.183 4.183 3 C -0.047 4.047 4 C -0.200 4.200 5 C 0.097 3.903 6 N -0.530 5.530 7 C 0.351 3.649 8 N -0.665 5.665 9 C 0.640 3.360 10 O -0.610 6.610 11 N -0.588 5.588 12 C -0.318 4.318 13 H 0.079 0.921 14 C -0.016 4.016 15 N -0.927 5.927 16 Si 0.997 3.003 17 H -0.271 1.271 18 H -0.270 1.270 19 H -0.274 1.274 20 H 0.082 0.918 21 H 0.059 0.941 22 H 0.099 0.901 23 H 0.178 0.822 24 H 0.170 0.830 25 H 0.162 0.838 26 H 0.419 0.581 27 H 0.395 0.605 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 16.193 0.087 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.190 4.190 3 C -0.073 4.073 4 C -0.222 4.222 5 C -0.060 4.060 6 N -0.244 5.244 7 C 0.119 3.881 8 N -0.315 5.315 9 C 0.340 3.660 10 O -0.489 6.489 11 N -0.231 5.231 12 C -0.448 4.448 13 H 0.097 0.903 14 C -0.215 4.215 15 N -0.569 5.569 16 Si 0.821 3.179 17 H -0.197 1.197 18 H -0.194 1.194 19 H -0.199 1.199 20 H 0.101 0.899 21 H 0.078 0.922 22 H 0.118 0.882 23 H 0.195 0.805 24 H 0.187 0.813 25 H 0.179 0.821 26 H 0.258 0.742 27 H 0.229 0.771 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.947 15.066 0.074 15.096 hybrid contribution -0.795 -0.423 0.006 0.900 sum -1.742 14.643 0.080 14.746 Atomic orbital electron populations 1.20734 0.87944 1.04050 1.03485 1.20618 0.98889 0.91313 1.08138 1.21712 0.93930 0.97898 0.93722 1.22342 0.95828 0.99314 1.04707 1.23042 1.00830 0.87433 0.94740 1.67619 1.07371 1.33149 1.16281 1.18522 0.88824 0.85298 0.95457 1.42665 1.10015 1.02665 1.76148 1.16256 0.85747 0.80994 0.82970 1.90817 1.12891 1.85931 1.59293 1.40978 1.08752 1.02903 1.70439 1.19542 0.92376 0.82938 1.49925 0.90343 1.25988 0.96696 1.02054 0.96773 1.69698 1.06756 1.29000 1.51399 0.84870 0.77740 0.76741 0.78591 1.19675 1.19444 1.19909 0.89924 0.92183 0.88215 0.80489 0.81301 0.82054 0.74170 0.77102 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 9.59 71.24 0.68 -1.25 15 2 C -0.18 -4.88 5.91 -19.64 -0.12 -4.99 15 3 C -0.05 -0.96 9.85 22.44 0.22 -0.74 15 4 C -0.20 -4.44 10.11 22.37 0.23 -4.21 15 5 C 0.10 3.08 11.18 84.65 0.95 4.03 15 6 N -0.53 -22.78 7.87 -193.06 -1.52 -24.30 15 7 C 0.35 13.48 7.41 132.92 0.99 14.47 15 8 N -0.66 -27.26 5.30 -322.24 -1.71 -28.96 15 9 C 0.64 33.92 8.48 179.05 1.52 35.44 15 10 O -0.61 -37.44 14.16 -3.95 -0.06 -37.49 15 11 N -0.59 -31.95 5.29 -320.73 -1.70 -33.65 15 12 C -0.32 -18.83 9.68 84.02 0.81 -18.02 15 13 H 0.08 4.96 7.16 -2.91 -0.02 4.93 15 14 C -0.02 -0.90 5.50 84.90 0.47 -0.44 15 15 N -0.93 -51.20 13.05 21.66 0.28 -50.92 15 16 Si 1.00 44.35 29.55 68.60 2.03 46.37 15 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 18 H -0.27 -11.28 7.11 99.48 0.71 -10.58 15 19 H -0.27 -12.29 7.11 99.48 0.71 -11.59 15 20 H 0.08 1.35 8.14 -2.39 -0.02 1.33 15 21 H 0.06 1.16 6.56 -2.39 -0.02 1.15 15 22 H 0.10 1.25 8.09 -2.38 -0.02 1.23 15 23 H 0.18 1.99 8.06 -2.91 -0.02 1.97 15 24 H 0.17 2.30 8.06 -2.91 -0.02 2.27 15 25 H 0.16 4.39 8.06 -2.91 -0.02 4.37 15 26 H 0.42 13.79 6.69 -92.70 -0.62 13.17 15 27 H 0.39 20.06 7.91 -92.71 -0.73 19.32 15 28 H 0.28 14.26 8.31 -92.71 -0.77 13.49 15 Total: -1.00 -77.50 251.30 2.92 -74.58 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -0.15 Total: 30.09 kcal Atomic # 6 Polarization: 18.53 SS G_CDS: 5.74 Total: 24.28 kcal Atomic # 7 Polarization: -133.19 SS G_CDS: -4.64 Total: -137.83 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.06 Total: -37.49 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -77.50 2.92 -74.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264493.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.681 kcal (2) G-P(sol) polarization free energy of solvation -77.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds