Wall clock time and date at job start Mon Mar 30 2020 03:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38852 * 120.74871 * 2 1 4 4 C 1.38065 * 119.30931 * 180.02562 * 3 2 1 5 5 N 1.31943 * 120.85020 * 359.72847 * 4 3 2 6 6 C 1.32352 * 121.63392 * 0.56081 * 5 4 3 7 7 N 1.39360 * 119.69523 * 179.71200 * 6 5 4 8 8 C 1.34769 * 120.00133 * 4.80607 * 7 6 5 9 9 O 1.21573 * 120.00486 * 354.91234 * 8 7 6 10 10 N 1.34783 * 120.00159 * 174.63724 * 8 7 6 11 11 C 1.37156 * 120.00326 * 180.27547 * 10 8 7 12 12 H 1.08002 * 120.00182 * 359.97438 * 11 10 8 13 13 C 1.38890 * 120.00431 * 179.97438 * 11 10 8 14 14 N 1.31474 * 119.99456 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00321 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47004 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47056 * 120.00069 * 15 13 11 18 18 H 1.48508 * 109.46888 * 239.99785 * 15 13 11 19 19 C 1.38343 * 120.75433 * 180.02562 * 2 1 3 20 20 H 1.08995 * 109.46870 * 269.97780 * 1 2 3 21 21 H 1.09007 * 109.46981 * 29.97515 * 1 2 3 22 22 H 1.08996 * 109.47492 * 149.97675 * 1 2 3 23 23 H 1.07991 * 120.34539 * 0.02562 * 3 2 1 24 24 H 1.08002 * 119.57146 * 180.02562 * 4 3 2 25 25 H 0.97008 * 119.99852 * 184.80065 * 7 6 5 26 26 H 0.97001 * 119.99449 * 0.26921 * 10 8 7 27 27 H 0.97002 * 119.99940 * 180.02562 * 14 13 11 28 28 H 1.08000 * 120.44370 * 359.95567 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1933 0.0000 4 6 3.5972 1.1586 -0.0005 5 7 4.2451 0.0093 0.0043 6 6 3.6044 -1.1488 -0.0012 7 7 4.3294 -2.3389 -0.0018 8 6 5.6729 -2.3096 0.1009 9 8 6.2595 -1.2448 0.1010 10 7 6.3658 -3.4606 0.2092 11 6 7.7326 -3.4305 0.3195 12 1 8.2537 -2.4845 0.3191 13 6 8.4466 -4.6165 0.4316 14 7 7.8122 -5.7681 0.4326 15 14 10.3082 -4.5756 0.5810 16 1 10.7760 -3.1665 0.5542 17 1 10.7161 -5.2088 1.8608 18 1 10.9123 -5.3190 -0.5538 19 6 2.2144 -1.1889 -0.0005 20 1 -0.3633 -0.0004 1.0276 21 1 -0.3633 0.8903 -0.5135 22 1 -0.3634 -0.8897 -0.5142 23 1 1.6949 2.1387 0.0004 24 1 4.1536 2.0843 -0.0001 25 1 3.8671 -3.1885 -0.0761 26 1 5.8978 -4.3102 0.2093 27 1 8.3108 -6.5964 0.5113 28 1 1.6941 -2.1353 -0.0002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264505.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:37 Heat of formation + Delta-G solvation = 16.612017 kcal Electronic energy + Delta-G solvation = -14192.192188 eV Core-core repulsion = 11629.737425 eV Total energy + Delta-G solvation = -2562.454763 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.21584 -38.39083 -34.69077 -33.61981 -33.37969 -31.20607 -29.39125 -27.69307 -24.96709 -22.97339 -22.10066 -19.64723 -17.97398 -17.76740 -16.35215 -15.72258 -15.41632 -14.68372 -14.51375 -14.11996 -13.69951 -13.49564 -12.91802 -12.66546 -12.54742 -12.41836 -11.55614 -11.46503 -11.11014 -10.30172 -10.27018 -10.17895 -9.45100 -9.32911 -9.22685 -8.29700 -7.97232 -7.72768 -6.34896 -3.75723 1.49781 1.63646 3.22852 3.29078 3.34453 3.49550 4.04367 4.30492 4.51179 4.74931 4.89154 5.15357 5.32268 5.37164 5.39583 5.48377 5.62302 5.74489 5.84297 6.04457 6.17829 6.50955 6.76421 7.25821 7.46688 7.63313 8.20876 8.54816 8.81588 9.23499 9.62170 10.13555 10.84466 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.072090 B = 0.005790 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.309431 B = 4834.534195 C = 5202.875040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.018 4.018 3 C -0.232 4.232 4 C 0.137 3.863 5 N -0.474 5.474 6 C 0.402 3.598 7 N -0.674 5.674 8 C 0.637 3.363 9 O -0.564 6.564 10 N -0.581 5.581 11 C -0.283 4.283 12 H 0.105 0.895 13 C 0.017 3.983 14 N -0.910 5.910 15 Si 0.932 3.068 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.230 4.230 20 H 0.073 0.927 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.126 0.874 24 H 0.152 0.848 25 H 0.404 0.596 26 H 0.390 0.610 27 H 0.269 0.731 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.677 6.809 -0.772 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.027 4.027 3 C -0.254 4.254 4 C -0.022 4.022 5 N -0.189 5.189 6 C 0.168 3.832 7 N -0.320 5.320 8 C 0.337 3.663 9 O -0.440 6.440 10 N -0.223 5.223 11 C -0.412 4.412 12 H 0.122 0.878 13 C -0.183 4.183 14 N -0.552 5.552 15 Si 0.759 3.241 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.255 4.255 20 H 0.092 0.908 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.144 0.856 24 H 0.169 0.831 25 H 0.239 0.761 26 H 0.224 0.776 27 H 0.079 0.921 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.972 7.435 -0.729 14.112 hybrid contribution -0.491 -1.094 0.047 1.200 sum -12.463 6.342 -0.681 14.000 Atomic orbital electron populations 1.20773 0.90669 1.02886 1.02524 1.19941 0.96049 0.92459 0.94204 1.21779 0.95651 0.98082 1.09914 1.22678 0.91226 0.95755 0.92552 1.67861 1.39118 0.96702 1.15217 1.18282 0.87132 0.86517 0.91232 1.43007 1.07293 1.06277 1.75429 1.16027 0.80039 0.86100 0.84085 1.90872 1.66723 1.28630 1.57785 1.41059 1.07309 1.04971 1.68925 1.19648 0.80156 0.94757 1.46671 0.87764 1.25195 1.00547 0.94609 0.97986 1.69647 1.36348 0.97459 1.51724 0.85754 0.82203 0.78497 0.77611 1.19256 1.20873 1.20872 1.21228 0.92614 0.99171 1.12477 0.90821 0.91277 0.91321 0.85595 0.83079 0.76056 0.77646 0.92122 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.06 36.01 0.36 -0.60 15 2 C -0.02 -0.23 5.91 -104.36 -0.62 -0.85 15 3 C -0.23 -3.01 9.81 -39.42 -0.39 -3.40 15 4 C 0.14 2.21 11.17 -17.57 -0.20 2.01 15 5 N -0.47 -9.88 7.88 -12.37 -0.10 -9.97 15 6 C 0.40 7.63 7.42 -154.74 -1.15 6.48 15 7 N -0.67 -13.32 5.39 -15.82 -0.09 -13.41 15 8 C 0.64 16.07 8.47 -86.92 -0.74 15.33 15 9 O -0.56 -16.35 14.18 5.30 0.08 -16.28 15 10 N -0.58 -15.13 5.29 -15.35 -0.08 -15.21 15 11 C -0.28 -8.06 9.68 -14.93 -0.14 -8.20 15 12 H 0.10 3.12 7.16 -52.49 -0.38 2.75 15 13 C 0.02 0.46 5.50 -17.46 -0.10 0.37 15 14 N -0.91 -25.14 13.05 55.49 0.72 -24.41 15 15 Si 0.93 21.53 29.55 -169.99 -5.02 16.50 15 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 19 C -0.23 -3.34 9.64 -39.24 -0.38 -3.71 15 20 H 0.07 0.57 8.14 -51.93 -0.42 0.14 15 21 H 0.07 0.50 8.10 -51.92 -0.42 0.08 15 22 H 0.07 0.53 8.10 -51.93 -0.42 0.10 15 23 H 0.13 1.24 8.06 -52.49 -0.42 0.81 15 24 H 0.15 2.03 8.06 -52.49 -0.42 1.61 15 25 H 0.40 6.37 8.72 -40.82 -0.36 6.02 15 26 H 0.39 9.57 7.92 -40.82 -0.32 9.25 15 27 H 0.27 7.03 8.31 -40.82 -0.34 6.69 15 28 H 0.13 1.50 8.06 -52.49 -0.42 1.08 15 LS Contribution 254.97 15.07 3.84 3.84 Total: -1.00 -34.10 254.97 -6.71 -40.81 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -2.72 Total: 10.69 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -3.34 Total: 7.43 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: 0.46 Total: -63.01 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.08 Total: -16.28 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -34.10 -6.71 -40.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264505.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.425 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds