Wall clock time and date at job start Mon Mar 30 2020 03:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38852 * 120.74871 * 2 1 4 4 C 1.38065 * 119.30931 * 180.02562 * 3 2 1 5 5 N 1.31943 * 120.85020 * 359.72847 * 4 3 2 6 6 C 1.32352 * 121.63392 * 0.56081 * 5 4 3 7 7 N 1.39360 * 119.69523 * 179.71200 * 6 5 4 8 8 C 1.34769 * 120.00133 * 4.80607 * 7 6 5 9 9 O 1.21573 * 120.00486 * 354.91234 * 8 7 6 10 10 N 1.34783 * 120.00159 * 174.63724 * 8 7 6 11 11 C 1.37156 * 120.00326 * 180.27547 * 10 8 7 12 12 H 1.08002 * 120.00182 * 359.97438 * 11 10 8 13 13 C 1.38890 * 120.00431 * 179.97438 * 11 10 8 14 14 N 1.31474 * 119.99456 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00321 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47004 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47056 * 120.00069 * 15 13 11 18 18 H 1.48508 * 109.46888 * 239.99785 * 15 13 11 19 19 C 1.38343 * 120.75433 * 180.02562 * 2 1 3 20 20 H 1.08995 * 109.46870 * 269.97780 * 1 2 3 21 21 H 1.09007 * 109.46981 * 29.97515 * 1 2 3 22 22 H 1.08996 * 109.47492 * 149.97675 * 1 2 3 23 23 H 1.07991 * 120.34539 * 0.02562 * 3 2 1 24 24 H 1.08002 * 119.57146 * 180.02562 * 4 3 2 25 25 H 0.97008 * 119.99852 * 184.80065 * 7 6 5 26 26 H 0.97001 * 119.99449 * 0.26921 * 10 8 7 27 27 H 0.97002 * 119.99940 * 180.02562 * 14 13 11 28 28 H 1.08000 * 120.44370 * 359.95567 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1933 0.0000 4 6 3.5972 1.1586 -0.0005 5 7 4.2451 0.0093 0.0043 6 6 3.6044 -1.1488 -0.0012 7 7 4.3294 -2.3389 -0.0018 8 6 5.6729 -2.3096 0.1009 9 8 6.2595 -1.2448 0.1010 10 7 6.3658 -3.4606 0.2092 11 6 7.7326 -3.4305 0.3195 12 1 8.2537 -2.4845 0.3191 13 6 8.4466 -4.6165 0.4316 14 7 7.8122 -5.7681 0.4326 15 14 10.3082 -4.5756 0.5810 16 1 10.7760 -3.1665 0.5542 17 1 10.7161 -5.2088 1.8608 18 1 10.9123 -5.3190 -0.5538 19 6 2.2144 -1.1889 -0.0005 20 1 -0.3633 -0.0004 1.0276 21 1 -0.3633 0.8903 -0.5135 22 1 -0.3634 -0.8897 -0.5142 23 1 1.6949 2.1387 0.0004 24 1 4.1536 2.0843 -0.0001 25 1 3.8671 -3.1885 -0.0761 26 1 5.8978 -4.3102 0.2093 27 1 8.3108 -6.5964 0.5113 28 1 1.6941 -2.1353 -0.0002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264505.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:36 Heat of formation + Delta-G solvation = -7.736368 kcal Electronic energy + Delta-G solvation = -14193.248013 eV Core-core repulsion = 11629.737425 eV Total energy + Delta-G solvation = -2563.510589 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.62253 -40.09392 -36.38291 -35.54080 -34.55787 -33.22780 -30.76357 -28.61570 -26.96840 -24.19249 -23.55747 -21.28464 -20.00299 -19.40757 -17.89122 -16.94745 -16.69807 -16.48847 -16.28402 -15.64994 -15.04697 -14.91968 -14.87698 -13.73227 -13.55870 -13.42967 -13.24001 -12.95430 -12.48043 -12.39867 -12.10044 -11.79539 -11.41342 -11.09060 -10.33584 -10.03742 -9.86402 -9.11919 -8.43837 -5.91897 0.29042 0.49996 1.40655 1.41780 1.55910 1.90672 2.32220 2.42226 3.02312 3.32328 3.55585 3.87211 3.97201 4.19330 4.30458 4.38778 4.76855 4.87683 4.90096 5.00246 5.23026 5.39832 5.45909 5.58905 5.68072 6.03411 6.32703 6.67717 7.12868 7.31598 7.70816 8.17182 8.75587 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.072090 B = 0.005790 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.309431 B = 4834.534195 C = 5202.875040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.018 4.018 3 C -0.209 4.209 4 C 0.110 3.890 5 N -0.536 5.536 6 C 0.360 3.640 7 N -0.665 5.665 8 C 0.641 3.359 9 O -0.610 6.610 10 N -0.588 5.588 11 C -0.316 4.316 12 H 0.078 0.922 13 C -0.017 4.017 14 N -0.927 5.927 15 Si 0.997 3.003 16 H -0.274 1.274 17 H -0.271 1.271 18 H -0.271 1.271 19 C -0.217 4.217 20 H 0.089 0.911 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.166 0.834 24 H 0.164 0.836 25 H 0.422 0.578 26 H 0.395 0.605 27 H 0.276 0.724 28 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.808 7.041 -0.751 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.026 4.026 3 C -0.231 4.231 4 C -0.047 4.047 5 N -0.252 5.252 6 C 0.128 3.872 7 N -0.315 5.315 8 C 0.341 3.659 9 O -0.489 6.489 10 N -0.230 5.230 11 C -0.446 4.446 12 H 0.096 0.904 13 C -0.216 4.216 14 N -0.569 5.569 15 Si 0.821 3.179 16 H -0.199 1.199 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.241 4.241 20 H 0.107 0.893 21 H 0.107 0.893 22 H 0.100 0.900 23 H 0.184 0.816 24 H 0.181 0.819 25 H 0.260 0.740 26 H 0.229 0.771 27 H 0.085 0.915 28 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.188 7.671 -0.713 16.145 hybrid contribution -0.019 -1.040 0.032 1.041 sum -14.207 6.631 -0.680 15.693 Atomic orbital electron populations 1.20871 0.86969 1.04615 1.03963 1.20537 0.98481 0.91418 0.92148 1.22210 0.94346 1.00153 1.06384 1.23034 0.93108 0.94950 0.93631 1.67627 1.41991 0.98534 1.17065 1.18646 0.88703 0.85687 0.94154 1.42592 1.05297 1.07924 1.75645 1.16244 0.81635 0.85098 0.82934 1.90820 1.68540 1.30059 1.59498 1.40986 1.06837 1.05453 1.69759 1.19573 0.81518 0.94373 1.49153 0.90354 1.25992 1.04852 0.93873 0.96880 1.69709 1.37989 0.97885 1.51321 0.84811 0.76686 0.78173 0.78272 1.19912 1.19597 1.19581 1.21552 0.90591 1.01521 1.10418 0.89277 0.89306 0.89984 0.81622 0.81863 0.74017 0.77052 0.91474 0.82275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.06 71.24 0.72 -0.59 15 2 C -0.02 -0.38 5.91 -19.69 -0.12 -0.50 15 3 C -0.21 -4.82 9.81 22.38 0.22 -4.60 15 4 C 0.11 3.51 11.17 84.64 0.95 4.45 15 5 N -0.54 -22.97 7.88 -193.06 -1.52 -24.49 15 6 C 0.36 13.74 7.42 132.93 0.99 14.72 15 7 N -0.67 -26.95 5.39 -322.24 -1.74 -28.69 15 8 C 0.64 33.74 8.47 179.05 1.52 35.25 15 9 O -0.61 -37.28 14.18 -3.95 -0.06 -37.34 15 10 N -0.59 -31.78 5.29 -320.73 -1.70 -33.48 15 11 C -0.32 -18.70 9.68 84.02 0.81 -17.89 15 12 H 0.08 4.95 7.16 -2.91 -0.02 4.93 15 13 C -0.02 -0.96 5.50 84.90 0.47 -0.49 15 14 N -0.93 -51.26 13.05 21.66 0.28 -50.98 15 15 Si 1.00 44.38 29.55 68.60 2.03 46.40 15 16 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 17 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 19 C -0.22 -5.82 9.64 22.49 0.22 -5.60 15 20 H 0.09 0.90 8.14 -2.39 -0.02 0.88 15 21 H 0.09 0.79 8.10 -2.38 -0.02 0.77 15 22 H 0.08 0.83 8.10 -2.39 -0.02 0.81 15 23 H 0.17 2.46 8.06 -2.92 -0.02 2.44 15 24 H 0.16 4.43 8.06 -2.91 -0.02 4.41 15 25 H 0.42 13.39 8.72 -92.70 -0.81 12.58 15 26 H 0.40 19.98 7.92 -92.71 -0.73 19.24 15 27 H 0.28 14.23 8.31 -92.71 -0.77 13.46 15 28 H 0.16 3.18 8.06 -2.91 -0.02 3.15 15 Total: -1.00 -77.10 254.97 2.72 -74.38 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: -0.34 Total: 29.43 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: 5.77 Total: 24.77 kcal Atomic # 7 Polarization: -132.97 SS G_CDS: -4.67 Total: -137.64 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -0.06 Total: -37.34 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -77.10 2.72 -74.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264505.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.644 kcal (2) G-P(sol) polarization free energy of solvation -77.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds