Wall clock time and date at job start Mon Mar 30 2020 03:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38272 * 119.54239 * 2 1 4 4 C 1.38498 * 119.24015 * 179.97438 * 3 2 1 5 5 C 1.39284 * 118.36029 * 0.02562 * 4 3 2 6 6 N 1.39937 * 120.48914 * 180.02562 * 5 4 3 7 7 C 1.34775 * 120.00146 * 34.96164 * 6 5 4 8 8 O 1.21587 * 119.99484 * 355.32594 * 7 6 5 9 9 N 1.34774 * 120.00262 * 175.32102 * 7 6 5 10 10 C 1.37168 * 120.00210 * 179.72236 * 9 7 6 11 11 H 1.08005 * 119.99722 * 0.27893 * 10 9 7 12 12 C 1.38874 * 120.00063 * 180.27740 * 10 9 7 13 13 N 1.31469 * 120.00248 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00106 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47088 * 60.00377 * 14 12 10 16 16 H 1.48498 * 109.47186 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47396 * 300.00546 * 14 12 10 18 18 C 1.38855 * 119.02517 * 0.27107 * 5 4 3 19 19 N 1.31831 * 120.65676 * 359.43259 * 18 5 4 20 20 H 1.09001 * 109.47574 * 90.00183 * 1 2 3 21 21 H 1.09002 * 109.47670 * 209.99935 * 1 2 3 22 22 H 1.09006 * 109.47407 * 330.00063 * 1 2 3 23 23 H 1.08001 * 120.37990 * 0.02562 * 3 2 1 24 24 H 1.08003 * 120.81846 * 179.97438 * 4 3 2 25 25 H 0.97000 * 119.99943 * 214.95575 * 6 5 4 26 26 H 0.97004 * 119.99406 * 0.02562 * 9 7 6 27 27 H 0.97005 * 120.00576 * 179.97438 * 13 12 10 28 28 H 1.07991 * 119.67449 * 179.72911 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1887 1.2030 0.0000 4 6 3.5737 1.1956 0.0005 5 6 4.2288 -0.0335 0.0005 6 7 5.6269 -0.0929 0.0016 7 6 6.3403 0.8339 0.6714 8 8 5.7741 1.7692 1.2034 9 7 7.6811 0.7240 0.7515 10 6 8.4077 1.6703 1.4284 11 1 7.9047 2.5012 1.9009 12 6 9.7898 1.5601 1.5061 13 7 10.4021 0.5490 0.9305 14 14 10.7792 2.8484 2.4284 15 1 10.3421 2.8861 3.8472 16 1 12.2223 2.5043 2.3636 17 1 10.5598 4.1794 1.8074 18 6 3.4743 -1.1991 -0.0058 19 7 2.1570 -1.1472 -0.0004 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6474 2.1375 0.0004 24 1 4.1319 2.1202 0.0001 25 1 6.0827 -0.8011 -0.4797 26 1 8.1328 -0.0221 0.3268 27 1 11.3676 0.4722 0.9844 28 1 3.9714 -2.1578 -0.0103 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264609.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:30 Heat of formation + Delta-G solvation = 3.385394 kcal Electronic energy + Delta-G solvation = -14161.396871 eV Core-core repulsion = 11598.368558 eV Total energy + Delta-G solvation = -2563.028313 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.27511 -38.65176 -34.93894 -33.85985 -31.98207 -31.72249 -30.69361 -26.91557 -24.76413 -23.28741 -21.96047 -20.02734 -18.12886 -17.84864 -16.46209 -15.92452 -15.54406 -14.73886 -14.31707 -13.96375 -13.92090 -13.42176 -13.12464 -12.78287 -12.33640 -12.10467 -11.74904 -11.57183 -11.14749 -10.48514 -10.30891 -10.27833 -9.62112 -9.42433 -9.33853 -8.77372 -8.12278 -7.69096 -6.45360 -3.87899 1.38627 1.66212 3.19335 3.23176 3.25338 3.54138 3.93065 4.23656 4.25611 4.60189 5.01791 5.22431 5.26409 5.32570 5.46298 5.65656 5.75600 5.78893 5.89038 6.04873 6.43313 6.59389 6.76935 7.32156 7.39587 7.52840 8.19536 8.25728 8.57732 9.09318 9.46976 9.94535 10.73149 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.076488 B = 0.005608 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.980612 B = 4991.239573 C = 5278.542707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.082 3.918 3 C -0.151 4.151 4 C -0.081 4.081 5 C 0.140 3.860 6 N -0.692 5.692 7 C 0.644 3.356 8 O -0.612 6.612 9 N -0.572 5.572 10 C -0.292 4.292 11 H 0.104 0.896 12 C 0.021 3.979 13 N -0.906 5.906 14 Si 0.935 3.065 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.059 3.941 19 N -0.468 5.468 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.131 0.869 24 H 0.153 0.847 25 H 0.401 0.599 26 H 0.393 0.607 27 H 0.272 0.728 28 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.446 -2.288 -3.677 12.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.057 4.057 3 C -0.172 4.172 4 C -0.109 4.109 5 C 0.040 3.960 6 N -0.339 5.339 7 C 0.345 3.655 8 O -0.494 6.494 9 N -0.211 5.211 10 C -0.421 4.421 11 H 0.122 0.878 12 C -0.180 4.180 13 N -0.547 5.547 14 Si 0.762 3.238 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.199 1.199 18 C -0.102 4.102 19 N -0.177 5.177 20 H 0.089 0.911 21 H 0.090 0.910 22 H 0.088 0.912 23 H 0.149 0.851 24 H 0.171 0.829 25 H 0.236 0.764 26 H 0.227 0.773 27 H 0.082 0.918 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.037 -2.250 -3.155 12.645 hybrid contribution 1.724 0.574 0.004 1.817 sum -10.313 -1.675 -3.151 10.913 Atomic orbital electron populations 1.20576 0.89350 1.02870 1.02383 1.21065 0.96658 0.88523 0.99492 1.21847 0.94356 0.98899 1.02057 1.21887 0.93895 0.98910 0.96234 1.18600 0.83733 0.94721 0.98973 1.42636 1.03404 1.32681 1.55198 1.15872 0.82790 0.83651 0.83154 1.90731 1.69778 1.34373 1.54552 1.41012 1.02277 1.26672 1.51115 1.19551 0.88529 1.04458 1.29572 0.87800 1.25223 0.96731 0.98041 0.98037 1.69622 1.10413 1.30174 1.44472 0.85857 0.78033 0.80201 0.79754 1.19900 1.20949 1.19906 1.22453 0.89318 0.96913 1.01490 1.67369 1.08828 1.29270 1.12280 0.91119 0.91024 0.91203 0.85143 0.82909 0.76420 0.77318 0.91805 0.82990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.99 10.16 36.00 0.37 -0.62 15 2 C 0.08 1.19 6.78 -82.57 -0.56 0.63 15 3 C -0.15 -2.25 9.73 -39.47 -0.38 -2.63 15 4 C -0.08 -1.44 8.81 -39.10 -0.34 -1.79 15 5 C 0.14 2.47 6.32 -83.54 -0.53 1.95 15 6 N -0.69 -12.70 5.36 -14.13 -0.08 -12.77 15 7 C 0.64 15.12 8.38 -86.92 -0.73 14.40 15 8 O -0.61 -16.24 13.40 5.29 0.07 -16.17 15 9 N -0.57 -14.19 5.29 -15.35 -0.08 -14.27 15 10 C -0.29 -7.98 9.68 -14.93 -0.14 -8.13 15 11 H 0.10 2.96 7.16 -52.48 -0.38 2.59 15 12 C 0.02 0.56 5.50 -17.47 -0.10 0.46 15 13 N -0.91 -24.30 13.05 55.49 0.72 -23.58 15 14 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 15 15 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 18 C 0.06 0.93 11.12 -17.32 -0.19 0.74 15 19 N -0.47 -7.44 10.26 -9.31 -0.10 -7.53 15 20 H 0.07 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.07 0.74 8.14 -51.93 -0.42 0.31 15 22 H 0.07 0.61 8.08 -51.93 -0.42 0.19 15 23 H 0.13 1.57 8.06 -52.49 -0.42 1.14 15 24 H 0.15 3.04 6.32 -52.48 -0.33 2.70 15 25 H 0.40 6.01 8.84 -40.82 -0.36 5.65 15 26 H 0.39 9.25 7.92 -40.82 -0.32 8.93 15 27 H 0.27 6.95 8.31 -40.82 -0.34 6.61 15 28 H 0.15 1.98 8.06 -52.49 -0.42 1.55 15 LS Contribution 253.74 15.07 3.82 3.82 Total: -1.00 -31.01 253.74 -5.91 -36.92 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -2.64 Total: 12.80 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -2.61 Total: 5.00 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.47 Total: -58.16 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.07 Total: -16.17 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.01 -5.91 -36.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264609.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.305 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds