Wall clock time and date at job start Mon Mar 30 2020 03:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38272 * 119.54239 * 2 1 4 4 C 1.38498 * 119.24015 * 179.97438 * 3 2 1 5 5 C 1.39284 * 118.36029 * 0.02562 * 4 3 2 6 6 N 1.39937 * 120.48914 * 180.02562 * 5 4 3 7 7 C 1.34775 * 120.00146 * 34.96164 * 6 5 4 8 8 O 1.21587 * 119.99484 * 355.32594 * 7 6 5 9 9 N 1.34774 * 120.00262 * 175.32102 * 7 6 5 10 10 C 1.37168 * 120.00210 * 179.72236 * 9 7 6 11 11 H 1.08005 * 119.99722 * 0.27893 * 10 9 7 12 12 C 1.38874 * 120.00063 * 180.27740 * 10 9 7 13 13 N 1.31469 * 120.00248 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00106 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47088 * 60.00377 * 14 12 10 16 16 H 1.48498 * 109.47186 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47396 * 300.00546 * 14 12 10 18 18 C 1.38855 * 119.02517 * 0.27107 * 5 4 3 19 19 N 1.31831 * 120.65676 * 359.43259 * 18 5 4 20 20 H 1.09001 * 109.47574 * 90.00183 * 1 2 3 21 21 H 1.09002 * 109.47670 * 209.99935 * 1 2 3 22 22 H 1.09006 * 109.47407 * 330.00063 * 1 2 3 23 23 H 1.08001 * 120.37990 * 0.02562 * 3 2 1 24 24 H 1.08003 * 120.81846 * 179.97438 * 4 3 2 25 25 H 0.97000 * 119.99943 * 214.95575 * 6 5 4 26 26 H 0.97004 * 119.99406 * 0.02562 * 9 7 6 27 27 H 0.97005 * 120.00576 * 179.97438 * 13 12 10 28 28 H 1.07991 * 119.67449 * 179.72911 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1887 1.2030 0.0000 4 6 3.5737 1.1956 0.0005 5 6 4.2288 -0.0335 0.0005 6 7 5.6269 -0.0929 0.0016 7 6 6.3403 0.8339 0.6714 8 8 5.7741 1.7692 1.2034 9 7 7.6811 0.7240 0.7515 10 6 8.4077 1.6703 1.4284 11 1 7.9047 2.5012 1.9009 12 6 9.7898 1.5601 1.5061 13 7 10.4021 0.5490 0.9305 14 14 10.7792 2.8484 2.4284 15 1 10.3421 2.8861 3.8472 16 1 12.2223 2.5043 2.3636 17 1 10.5598 4.1794 1.8074 18 6 3.4743 -1.1991 -0.0058 19 7 2.1570 -1.1472 -0.0004 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6474 2.1375 0.0004 24 1 4.1319 2.1202 0.0001 25 1 6.0827 -0.8011 -0.4797 26 1 8.1328 -0.0221 0.3268 27 1 11.3676 0.4722 0.9844 28 1 3.9714 -2.1578 -0.0103 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264609.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:30 Heat of formation + Delta-G solvation = -18.771988 kcal Electronic energy + Delta-G solvation = -14162.357687 eV Core-core repulsion = 11598.368558 eV Total energy + Delta-G solvation = -2563.989129 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.69866 -40.27940 -36.59640 -35.71925 -33.52041 -33.18508 -32.15530 -28.21499 -26.59567 -24.55611 -23.33539 -21.70007 -20.08057 -19.46693 -17.99675 -17.25774 -16.90848 -16.60718 -15.89393 -15.62764 -15.28285 -14.97810 -14.71017 -14.05920 -13.49686 -13.38398 -13.00471 -12.96699 -12.85258 -12.45400 -12.12368 -11.79149 -11.48632 -11.11735 -10.63794 -10.26628 -10.10305 -9.08297 -8.46211 -5.95443 0.14354 0.35264 1.42240 1.43318 1.52759 1.94733 2.22509 2.42420 2.86854 3.24626 3.49766 3.79144 3.96669 4.00299 4.14184 4.40539 4.72123 4.85554 4.89639 5.06767 5.22611 5.29894 5.37454 5.51215 5.69638 5.94405 6.33034 6.71544 7.02429 7.08653 7.58042 8.05247 8.72100 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.076488 B = 0.005608 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.980612 B = 4991.239573 C = 5278.542707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.086 3.914 3 C -0.149 4.149 4 C -0.101 4.101 5 C 0.110 3.890 6 N -0.676 5.676 7 C 0.648 3.352 8 O -0.646 6.646 9 N -0.581 5.581 10 C -0.322 4.322 11 H 0.083 0.917 12 C -0.015 4.015 13 N -0.925 5.925 14 Si 0.997 3.003 15 H -0.272 1.272 16 H -0.272 1.272 17 H -0.271 1.271 18 C 0.070 3.930 19 N -0.480 5.480 20 H 0.089 0.911 21 H 0.075 0.925 22 H 0.091 0.909 23 H 0.159 0.841 24 H 0.125 0.875 25 H 0.417 0.583 26 H 0.397 0.603 27 H 0.277 0.723 28 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.613 -2.676 -3.769 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C -0.169 4.169 4 C -0.130 4.130 5 C 0.011 3.989 6 N -0.325 5.325 7 C 0.349 3.651 8 O -0.531 6.531 9 N -0.221 5.221 10 C -0.451 4.451 11 H 0.101 0.899 12 C -0.214 4.214 13 N -0.566 5.566 14 Si 0.820 3.180 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.091 4.091 19 N -0.190 5.190 20 H 0.108 0.892 21 H 0.094 0.906 22 H 0.110 0.890 23 H 0.177 0.823 24 H 0.143 0.857 25 H 0.255 0.745 26 H 0.232 0.768 27 H 0.086 0.914 28 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -13.241 -2.683 -3.283 13.904 hybrid contribution 1.901 0.661 -0.014 2.013 sum -11.341 -2.022 -3.296 11.982 Atomic orbital electron populations 1.20712 0.86114 1.04190 1.03984 1.21792 0.98758 0.87824 0.96908 1.22132 0.93106 1.00619 1.01079 1.21849 0.95415 0.98077 0.97640 1.18817 0.83140 0.95608 1.01332 1.42250 1.03793 1.31942 1.54536 1.16051 0.82523 0.83790 0.82695 1.90701 1.70425 1.36049 1.55950 1.40942 1.02753 1.26691 1.51704 1.19540 0.89424 1.05080 1.31100 0.89882 1.26008 0.97069 0.99889 0.98462 1.69691 1.10857 1.31172 1.44896 0.84932 0.76932 0.77759 0.78364 1.19731 1.19639 1.19618 1.22795 0.89361 0.97149 0.99759 1.67524 1.08675 1.29942 1.12872 0.89208 0.90628 0.89019 0.82293 0.85675 0.74512 0.76830 0.91380 0.80440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 10.16 71.23 0.72 -0.88 15 2 C 0.09 2.27 6.78 42.56 0.29 2.56 15 3 C -0.15 -4.20 9.73 22.34 0.22 -3.99 15 4 C -0.10 -3.64 8.81 22.58 0.20 -3.44 15 5 C 0.11 3.85 6.32 38.25 0.24 4.09 15 6 N -0.68 -24.99 5.36 -316.88 -1.70 -26.68 15 7 C 0.65 31.23 8.38 179.06 1.50 32.73 15 8 O -0.65 -35.53 13.40 -3.99 -0.05 -35.58 15 9 N -0.58 -29.54 5.29 -320.73 -1.70 -31.24 15 10 C -0.32 -18.04 9.68 84.01 0.81 -17.23 15 11 H 0.08 4.92 7.16 -2.91 -0.02 4.90 15 12 C -0.01 -0.79 5.50 84.90 0.47 -0.33 15 13 N -0.93 -49.56 13.05 21.65 0.28 -49.28 15 14 Si 1.00 42.56 29.55 68.60 2.03 44.59 15 15 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 16 H -0.27 -10.98 7.11 99.48 0.71 -10.27 15 17 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 18 C 0.07 2.07 11.12 84.84 0.94 3.02 15 19 N -0.48 -14.19 10.26 -183.37 -1.88 -16.07 15 20 H 0.09 1.27 8.14 -2.39 -0.02 1.25 15 21 H 0.07 1.29 8.14 -2.39 -0.02 1.27 15 22 H 0.09 1.21 8.08 -2.38 -0.02 1.19 15 23 H 0.16 3.44 8.06 -2.91 -0.02 3.41 15 24 H 0.13 5.19 6.32 -2.91 -0.02 5.18 15 25 H 0.42 12.39 8.84 -92.71 -0.82 11.57 15 26 H 0.40 19.06 7.92 -92.71 -0.73 18.33 15 27 H 0.28 13.96 8.31 -92.70 -0.77 13.19 15 28 H 0.18 4.21 8.06 -2.92 -0.02 4.19 15 Total: -1.00 -67.00 253.74 2.03 -64.98 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: -0.35 Total: 32.74 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 5.39 Total: 16.55 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -4.99 Total: -123.27 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -0.05 Total: -35.58 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -67.00 2.03 -64.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264609.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.206 kcal (2) G-P(sol) polarization free energy of solvation -67.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds