Wall clock time and date at job start Mon Mar 30 2020 03:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38844 * 120.33968 * 2 1 4 4 C 1.38346 * 118.49422 * 180.02562 * 3 2 1 5 5 C 1.39049 * 119.10313 * 0.02562 * 4 3 2 6 6 N 1.39364 * 119.70249 * 179.97438 * 5 4 3 7 7 C 1.34781 * 120.00303 * 174.90519 * 6 5 4 8 8 O 1.21576 * 119.99719 * 5.09940 * 7 6 5 9 9 N 1.34773 * 119.99946 * 185.08873 * 7 6 5 10 10 C 1.37159 * 119.99751 * 180.02562 * 9 7 6 11 11 H 1.08005 * 120.00304 * 359.97438 * 10 9 7 12 12 C 1.38894 * 119.99955 * 180.02562 * 10 9 7 13 13 N 1.31468 * 119.99847 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99899 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47103 * 60.00159 * 14 12 10 16 16 H 1.48496 * 109.46879 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47291 * 299.99598 * 14 12 10 18 18 N 1.32362 * 120.60518 * 359.97438 * 5 4 3 19 19 C 1.31943 * 121.62785 * 0.04555 * 18 5 4 20 20 H 1.08997 * 109.47652 * 89.99691 * 1 2 3 21 21 H 1.09007 * 109.46775 * 209.99901 * 1 2 3 22 22 H 1.09000 * 109.47224 * 329.99198 * 1 2 3 23 23 H 1.08007 * 120.75560 * 0.02562 * 3 2 1 24 24 H 1.08009 * 120.44897 * 179.72857 * 4 3 2 25 25 H 0.97004 * 119.99691 * 354.90819 * 6 5 4 26 26 H 0.97001 * 120.00016 * 0.02562 * 9 7 6 27 27 H 0.97000 * 120.00163 * 180.02562 * 13 12 10 28 28 H 1.08004 * 119.57232 * 179.97438 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1983 0.0000 4 6 3.5911 1.1537 -0.0005 5 6 4.2279 -0.0823 -0.0016 6 7 5.6203 -0.1418 -0.0027 7 6 6.2441 -1.3321 0.0999 8 8 5.5954 -2.3603 0.1000 9 7 7.5870 -1.3825 0.2022 10 6 8.2219 -2.5939 0.3061 11 1 7.6456 -3.5074 0.3063 12 6 9.6058 -2.6459 0.4120 13 7 10.3071 -1.5339 0.4132 14 14 10.4704 -4.2957 0.5528 15 1 10.1716 -5.1153 -0.6490 16 1 11.9361 -4.0794 0.6531 17 1 9.9910 -5.0039 1.7668 18 7 3.5238 -1.2032 -0.0016 19 6 2.2044 -1.1914 -0.0015 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8901 0.5139 22 1 -0.3634 0.8899 0.5140 23 1 1.6863 2.1438 0.0004 24 1 4.1681 2.0667 -0.0050 25 1 6.1404 0.6736 -0.0773 26 1 8.1045 -0.5621 0.2023 27 1 11.2737 -1.5701 0.4868 28 1 1.6631 -2.1260 -0.0019 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264611.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:38 Heat of formation + Delta-G solvation = 16.710722 kcal Electronic energy + Delta-G solvation = -14175.249181 eV Core-core repulsion = 11612.798698 eV Total energy + Delta-G solvation = -2562.450483 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.22265 -38.40652 -34.79762 -33.66987 -32.56976 -31.33555 -30.72839 -26.56638 -24.73355 -23.51458 -21.75586 -19.99799 -18.05331 -17.86604 -16.59627 -15.56339 -14.97958 -14.67784 -14.50520 -14.07383 -13.68712 -13.43859 -12.95793 -12.70934 -12.56602 -12.37941 -11.57758 -11.47046 -11.06472 -10.40185 -10.17546 -10.13646 -9.50973 -9.41581 -9.31744 -8.30129 -7.96278 -7.62767 -6.34706 -3.75663 1.46529 1.65315 3.26884 3.28640 3.30766 3.49444 4.02489 4.30358 4.50667 4.80134 4.99641 5.11303 5.22827 5.37883 5.39816 5.55661 5.62021 5.81489 5.95601 6.02278 6.20449 6.47522 6.75659 7.25436 7.45752 7.63029 8.19957 8.53702 8.81030 9.23212 9.62096 10.13556 10.84492 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.075934 B = 0.005698 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.652950 B = 4912.773541 C = 5262.250509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.201 4.201 3 C -0.047 4.047 4 C -0.225 4.225 5 C 0.394 3.606 6 N -0.674 5.674 7 C 0.637 3.363 8 O -0.565 6.565 9 N -0.580 5.580 10 C -0.284 4.284 11 H 0.103 0.897 12 C 0.018 3.982 13 N -0.910 5.910 14 Si 0.934 3.066 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.274 1.274 18 N -0.467 5.467 19 C 0.136 3.864 20 H 0.063 0.937 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.129 0.871 24 H 0.130 0.870 25 H 0.405 0.595 26 H 0.390 0.610 27 H 0.270 0.730 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.081 7.582 -0.769 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.205 4.205 3 C -0.073 4.073 4 C -0.250 4.250 5 C 0.160 3.840 6 N -0.320 5.320 7 C 0.337 3.663 8 O -0.441 6.441 9 N -0.222 5.222 10 C -0.414 4.414 11 H 0.121 0.879 12 C -0.183 4.183 13 N -0.552 5.552 14 Si 0.761 3.239 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.200 1.200 18 N -0.181 5.181 19 C -0.024 4.024 20 H 0.082 0.918 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.147 0.853 24 H 0.148 0.852 25 H 0.240 0.760 26 H 0.224 0.776 27 H 0.080 0.920 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.782 5.786 -0.729 14.050 hybrid contribution 0.749 1.015 0.035 1.262 sum -12.033 6.801 -0.695 13.840 Atomic orbital electron populations 1.20550 0.90833 1.02324 1.01763 1.20702 0.97121 0.94347 1.08356 1.21077 0.92987 0.97787 0.95471 1.21373 0.95446 0.96961 1.11192 1.18307 0.84522 0.89239 0.91893 1.43002 1.03255 1.10302 1.75474 1.16026 0.83253 0.82885 0.84117 1.90870 1.64274 1.31112 1.57855 1.41039 1.02251 1.09927 1.68969 1.19550 0.89532 0.85298 1.47030 0.87872 1.25192 0.96256 0.98893 0.97925 1.69626 1.07364 1.26642 1.51566 0.85870 0.77664 0.81366 0.79011 1.19978 1.21069 1.19989 1.67865 1.07157 1.28500 1.14587 1.22601 0.89148 0.97203 0.93401 0.91803 0.91750 0.92088 0.85283 0.85163 0.76049 0.77634 0.92007 0.83206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 10.03 36.01 0.36 -0.52 15 2 C -0.20 -2.60 5.90 -104.47 -0.62 -3.22 15 3 C -0.05 -0.58 9.85 -39.32 -0.39 -0.97 15 4 C -0.22 -3.20 9.94 -39.24 -0.39 -3.59 15 5 C 0.39 7.44 7.42 -154.73 -1.15 6.29 15 6 N -0.67 -13.28 5.39 -15.82 -0.09 -13.37 15 7 C 0.64 16.05 8.47 -86.92 -0.74 15.31 15 8 O -0.56 -16.37 14.18 5.30 0.08 -16.29 15 9 N -0.58 -15.11 5.29 -15.34 -0.08 -15.19 15 10 C -0.28 -8.11 9.68 -14.93 -0.14 -8.25 15 11 H 0.10 3.08 7.16 -52.48 -0.38 2.70 15 12 C 0.02 0.49 5.50 -17.46 -0.10 0.39 15 13 N -0.91 -25.14 13.05 55.49 0.72 -24.42 15 14 Si 0.93 21.53 29.55 -169.99 -5.02 16.51 15 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 16 H -0.29 -6.41 7.11 56.52 0.40 -6.01 15 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 18 N -0.47 -9.72 7.89 -12.37 -0.10 -9.82 15 19 C 0.14 2.20 10.85 -17.57 -0.19 2.01 15 20 H 0.06 0.52 8.14 -51.93 -0.42 0.10 15 21 H 0.06 0.54 8.09 -51.93 -0.42 0.12 15 22 H 0.06 0.47 8.09 -51.93 -0.42 0.05 15 23 H 0.13 1.16 8.06 -52.48 -0.42 0.74 15 24 H 0.13 1.45 8.06 -52.48 -0.42 1.03 15 25 H 0.40 6.34 8.72 -40.82 -0.36 5.98 15 26 H 0.39 9.57 7.92 -40.82 -0.32 9.24 15 27 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 28 H 0.15 2.07 8.06 -52.48 -0.42 1.65 15 LS Contribution 254.93 15.07 3.84 3.84 Total: -1.00 -33.98 254.93 -6.72 -40.70 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -2.72 Total: 10.60 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -3.35 Total: 7.45 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: 0.46 Total: -62.80 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.08 Total: -16.29 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -33.98 -6.72 -40.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264611.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.407 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds