Wall clock time and date at job start Mon Mar 30 2020 03:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38844 * 120.33968 * 2 1 4 4 C 1.38346 * 118.49422 * 180.02562 * 3 2 1 5 5 C 1.39049 * 119.10313 * 0.02562 * 4 3 2 6 6 N 1.39364 * 119.70249 * 179.97438 * 5 4 3 7 7 C 1.34781 * 120.00303 * 174.90519 * 6 5 4 8 8 O 1.21576 * 119.99719 * 5.09940 * 7 6 5 9 9 N 1.34773 * 119.99946 * 185.08873 * 7 6 5 10 10 C 1.37159 * 119.99751 * 180.02562 * 9 7 6 11 11 H 1.08005 * 120.00304 * 359.97438 * 10 9 7 12 12 C 1.38894 * 119.99955 * 180.02562 * 10 9 7 13 13 N 1.31468 * 119.99847 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99899 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47103 * 60.00159 * 14 12 10 16 16 H 1.48496 * 109.46879 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47291 * 299.99598 * 14 12 10 18 18 N 1.32362 * 120.60518 * 359.97438 * 5 4 3 19 19 C 1.31943 * 121.62785 * 0.04555 * 18 5 4 20 20 H 1.08997 * 109.47652 * 89.99691 * 1 2 3 21 21 H 1.09007 * 109.46775 * 209.99901 * 1 2 3 22 22 H 1.09000 * 109.47224 * 329.99198 * 1 2 3 23 23 H 1.08007 * 120.75560 * 0.02562 * 3 2 1 24 24 H 1.08009 * 120.44897 * 179.72857 * 4 3 2 25 25 H 0.97004 * 119.99691 * 354.90819 * 6 5 4 26 26 H 0.97001 * 120.00016 * 0.02562 * 9 7 6 27 27 H 0.97000 * 120.00163 * 180.02562 * 13 12 10 28 28 H 1.08004 * 119.57232 * 179.97438 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1983 0.0000 4 6 3.5911 1.1537 -0.0005 5 6 4.2279 -0.0823 -0.0016 6 7 5.6203 -0.1418 -0.0027 7 6 6.2441 -1.3321 0.0999 8 8 5.5954 -2.3603 0.1000 9 7 7.5870 -1.3825 0.2022 10 6 8.2219 -2.5939 0.3061 11 1 7.6456 -3.5074 0.3063 12 6 9.6058 -2.6459 0.4120 13 7 10.3071 -1.5339 0.4132 14 14 10.4704 -4.2957 0.5528 15 1 10.1716 -5.1153 -0.6490 16 1 11.9361 -4.0794 0.6531 17 1 9.9910 -5.0039 1.7668 18 7 3.5238 -1.2032 -0.0016 19 6 2.2044 -1.1914 -0.0015 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8901 0.5139 22 1 -0.3634 0.8899 0.5140 23 1 1.6863 2.1438 0.0004 24 1 4.1681 2.0667 -0.0050 25 1 6.1404 0.6736 -0.0773 26 1 8.1045 -0.5621 0.2023 27 1 11.2737 -1.5701 0.4868 28 1 1.6631 -2.1260 -0.0019 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264611.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:38 Heat of formation + Delta-G solvation = -7.609410 kcal Electronic energy + Delta-G solvation = -14176.303781 eV Core-core repulsion = 11612.798698 eV Total energy + Delta-G solvation = -2563.505083 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.61841 -40.10379 -36.44090 -35.60680 -33.88410 -33.14273 -32.07376 -27.86600 -26.52422 -24.79740 -23.00106 -21.69214 -20.06350 -19.45836 -18.23077 -16.97332 -16.49069 -16.27607 -15.98974 -15.68262 -15.00027 -14.92070 -14.86135 -13.81820 -13.66199 -13.46275 -13.14778 -12.93826 -12.52534 -12.42748 -12.10750 -11.69033 -11.33496 -11.07597 -10.65757 -10.03732 -9.85121 -8.95873 -8.43397 -5.91615 0.26522 0.53357 1.41617 1.44253 1.52532 1.92205 2.32215 2.42522 3.01393 3.32611 3.55139 3.95214 4.02088 4.16510 4.23755 4.34097 4.71789 4.95826 4.97180 5.06769 5.23894 5.38787 5.45220 5.58677 5.68821 6.03297 6.32677 6.67998 7.12740 7.30633 7.71159 8.17690 8.75554 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.075934 B = 0.005698 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.652950 B = 4912.773541 C = 5262.250509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.178 4.178 3 C -0.045 4.045 4 C -0.205 4.205 5 C 0.347 3.653 6 N -0.665 5.665 7 C 0.640 3.360 8 O -0.611 6.611 9 N -0.588 5.588 10 C -0.319 4.319 11 H 0.079 0.921 12 C -0.017 4.017 13 N -0.927 5.927 14 Si 0.997 3.003 15 H -0.272 1.272 16 H -0.269 1.269 17 H -0.273 1.273 18 N -0.528 5.528 19 C 0.104 3.896 20 H 0.079 0.921 21 H 0.070 0.930 22 H 0.085 0.915 23 H 0.177 0.823 24 H 0.165 0.835 25 H 0.422 0.578 26 H 0.395 0.605 27 H 0.276 0.724 28 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.437 9.359 -0.748 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.182 4.182 3 C -0.070 4.070 4 C -0.229 4.229 5 C 0.116 3.884 6 N -0.315 5.315 7 C 0.341 3.659 8 O -0.491 6.491 9 N -0.230 5.230 10 C -0.449 4.449 11 H 0.097 0.903 12 C -0.216 4.216 13 N -0.569 5.569 14 Si 0.820 3.180 15 H -0.198 1.198 16 H -0.194 1.194 17 H -0.198 1.198 18 N -0.242 5.242 19 C -0.054 4.054 20 H 0.097 0.903 21 H 0.089 0.911 22 H 0.104 0.896 23 H 0.195 0.805 24 H 0.182 0.818 25 H 0.260 0.740 26 H 0.230 0.770 27 H 0.085 0.915 28 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.191 7.632 -0.714 16.129 hybrid contribution 0.953 0.565 0.017 1.108 sum -13.238 8.197 -0.697 15.586 Atomic orbital electron populations 1.20660 0.87596 1.03913 1.03170 1.21171 0.99309 0.93356 1.04404 1.21673 0.92254 0.99445 0.93650 1.21738 0.96587 0.96141 1.08464 1.18693 0.83812 0.90741 0.95191 1.42576 1.04178 1.09005 1.75735 1.16251 0.82834 0.83922 0.82938 1.90818 1.65202 1.33471 1.59576 1.40968 1.02728 1.09466 1.69847 1.19508 0.90331 0.85559 1.49453 0.90343 1.25993 0.96191 1.02547 0.96828 1.69693 1.07827 1.28168 1.51205 0.84933 0.77068 0.77103 0.78853 1.19775 1.19390 1.19815 1.67606 1.09582 1.30880 1.16181 1.22888 0.88090 0.99277 0.95108 0.90284 0.91114 0.89648 0.80525 0.81772 0.73980 0.77047 0.91455 0.82499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 10.03 71.24 0.71 -0.64 15 2 C -0.18 -4.13 5.90 -19.76 -0.12 -4.24 15 3 C -0.04 -0.92 9.85 22.44 0.22 -0.70 15 4 C -0.21 -5.30 9.94 22.49 0.22 -5.07 15 5 C 0.35 13.14 7.42 132.93 0.99 14.12 15 6 N -0.67 -26.80 5.39 -322.22 -1.74 -28.54 15 7 C 0.64 33.70 8.47 179.05 1.52 35.22 15 8 O -0.61 -37.38 14.18 -3.95 -0.06 -37.44 15 9 N -0.59 -31.78 5.29 -320.73 -1.70 -33.48 15 10 C -0.32 -18.85 9.68 84.02 0.81 -18.04 15 11 H 0.08 4.94 7.16 -2.91 -0.02 4.92 15 12 C -0.02 -0.93 5.50 84.90 0.47 -0.46 15 13 N -0.93 -51.33 13.05 21.66 0.28 -51.04 15 14 Si 1.00 44.37 29.55 68.60 2.03 46.39 15 15 H -0.27 -11.98 7.11 99.48 0.71 -11.28 15 16 H -0.27 -11.22 7.11 99.48 0.71 -10.51 15 17 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 18 N -0.53 -22.63 7.89 -193.06 -1.52 -24.15 15 19 C 0.10 3.37 10.85 84.63 0.92 4.29 15 20 H 0.08 0.96 8.14 -2.39 -0.02 0.94 15 21 H 0.07 0.95 8.09 -2.38 -0.02 0.93 15 22 H 0.08 0.86 8.09 -2.39 -0.02 0.84 15 23 H 0.18 2.02 8.06 -2.91 -0.02 2.00 15 24 H 0.16 3.01 8.06 -2.91 -0.02 2.99 15 25 H 0.42 13.25 8.72 -92.71 -0.81 12.44 15 26 H 0.40 19.98 7.92 -92.71 -0.73 19.24 15 27 H 0.28 14.33 8.31 -92.71 -0.77 13.56 15 28 H 0.16 4.47 8.06 -2.91 -0.02 4.44 15 Total: -1.00 -77.29 254.93 2.70 -74.58 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: -0.34 Total: 29.21 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: 5.75 Total: 24.47 kcal Atomic # 7 Polarization: -132.54 SS G_CDS: -4.68 Total: -137.21 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.06 Total: -37.44 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -77.29 2.70 -74.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264611.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.976 kcal (2) G-P(sol) polarization free energy of solvation -77.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds