Wall clock time and date at job start Mon Mar 30 2020 02:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35753 * 116.99929 * 2 1 4 4 C 1.39207 * 119.48390 * 359.97438 * 3 2 1 5 5 C 1.37914 * 121.21234 * 180.02562 * 4 3 2 6 6 C 1.39448 * 120.12263 * 359.97438 * 5 4 3 7 7 C 1.47236 * 120.50517 * 179.97438 * 6 5 4 8 8 N 1.34780 * 119.99872 * 353.61161 * 7 6 5 9 9 O 1.21635 * 120.00193 * 173.61811 * 7 6 5 10 10 C 1.46472 * 118.99448 * 359.97438 * 6 5 4 11 11 C 1.40945 * 120.57333 * 179.97438 * 10 6 5 12 12 H 1.08005 * 119.99960 * 325.53056 * 11 10 6 13 13 C 1.40245 * 120.00040 * 145.80711 * 11 10 6 14 14 N 1.30641 * 119.99702 * 349.04114 * 13 11 10 15 15 Si 1.86799 * 119.99878 * 169.04575 * 13 11 10 16 16 H 1.48500 * 109.47403 * 59.99688 * 15 13 11 17 17 H 1.48495 * 109.46873 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46909 * 299.99880 * 15 13 11 19 19 C 1.38185 * 119.48493 * 180.23432 * 3 2 1 20 20 H 1.09003 * 109.46597 * 60.00568 * 1 2 3 21 21 H 1.08993 * 109.47179 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47215 * 300.00664 * 1 2 3 23 23 H 1.08006 * 119.39494 * 0.02562 * 4 3 2 24 24 H 1.08003 * 119.93954 * 179.97438 * 5 4 3 25 25 H 0.96998 * 119.99707 * 0.02562 * 8 7 6 26 26 H 0.96993 * 119.99759 * 180.02562 * 8 7 6 27 27 H 0.96996 * 119.99844 * 179.97438 * 14 13 11 28 28 H 1.08000 * 120.10760 * 0.02562 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2767 2.3702 -0.0005 5 6 1.8654 3.6173 -0.0011 6 6 3.2549 3.7353 -0.0006 7 6 3.8923 5.0625 -0.0017 8 7 3.1385 6.1720 -0.1331 9 8 5.0992 5.1577 0.1158 10 6 4.0707 2.5188 0.0011 11 6 5.4779 2.5992 0.0012 12 1 5.9730 3.3992 -0.5292 13 6 6.2352 1.6372 0.6851 14 7 5.6469 0.7969 1.4941 15 14 8.0853 1.5575 0.4393 16 1 8.6948 2.8492 0.8457 17 1 8.6481 0.4623 1.2694 18 1 8.3837 1.2979 -0.9920 19 6 3.4259 1.2695 -0.0049 20 1 -0.3632 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 0.1994 2.2925 -0.0005 24 1 1.2492 4.5043 -0.0019 25 1 2.1760 6.0961 -0.2266 26 1 3.5584 7.0463 -0.1343 27 1 6.1706 0.1313 1.9668 28 1 4.0077 0.3596 -0.0091 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220924679.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:29 Heat of formation + Delta-G solvation = -61.087367 kcal Electronic energy + Delta-G solvation = -14693.499837 eV Core-core repulsion = 12095.383024 eV Total energy + Delta-G solvation = -2598.116813 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.93046 -38.05210 -35.65335 -33.73706 -32.55291 -29.71920 -29.08979 -26.69496 -25.25109 -22.26604 -20.95249 -19.31093 -17.88449 -16.68730 -16.12221 -15.76703 -14.97777 -14.88092 -14.65636 -13.83654 -13.43932 -13.01291 -12.63342 -12.30374 -11.73804 -11.41341 -11.31045 -11.17084 -11.06223 -10.66872 -10.22946 -9.94295 -9.56030 -9.23459 -8.77271 -8.54379 -7.46944 -7.03144 -6.78500 -4.44582 2.36741 2.78525 3.10081 3.15739 3.24251 3.96313 4.18472 4.24113 4.57316 4.68089 5.52876 5.60289 5.68454 5.84885 5.87154 6.16083 6.35249 6.66428 6.91355 7.12770 7.35760 7.50161 7.53701 7.63994 7.81417 7.92842 8.32980 8.44733 8.69091 8.76826 8.86495 9.47709 10.11636 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.020990 B = 0.012799 C = 0.008154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.647183 B = 2187.178252 C = 3433.195553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.149 3.851 4 C -0.330 4.330 5 C -0.019 4.019 6 C -0.291 4.291 7 C 0.568 3.432 8 N -0.876 5.876 9 O -0.548 6.548 10 C 0.174 3.826 11 C -0.407 4.407 12 H 0.106 0.894 13 C 0.069 3.931 14 N -0.779 5.779 15 Si 0.919 3.081 16 H -0.261 1.261 17 H -0.278 1.278 18 H -0.262 1.262 19 C -0.195 4.195 20 H 0.046 0.954 21 H 0.083 0.917 22 H 0.046 0.954 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.390 0.610 26 H 0.387 0.613 27 H 0.285 0.715 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 1.592 -1.983 6.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.104 3.896 4 C -0.349 4.349 5 C -0.038 4.038 6 C -0.296 4.296 7 C 0.360 3.640 8 N -0.440 5.440 9 O -0.427 6.427 10 C 0.169 3.831 11 C -0.434 4.434 12 H 0.123 0.877 13 C -0.151 4.151 14 N -0.403 5.403 15 Si 0.743 3.257 16 H -0.185 1.185 17 H -0.203 1.203 18 H -0.186 1.186 19 C -0.215 4.215 20 H 0.064 0.936 21 H 0.102 0.898 22 H 0.065 0.935 23 H 0.116 0.884 24 H 0.112 0.888 25 H 0.218 0.782 26 H 0.216 0.784 27 H 0.096 0.904 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.437 1.059 -1.720 5.800 hybrid contribution -0.050 0.419 0.077 0.429 sum -5.486 1.478 -1.642 5.915 Atomic orbital electron populations 1.22787 0.80605 1.02005 1.00606 1.85996 1.19689 1.29142 1.89425 1.19010 0.92347 0.82549 0.95648 1.20238 0.97470 0.92465 1.24769 1.20434 0.93284 0.95284 0.94785 1.20442 0.92355 0.92043 1.24796 1.18258 0.86339 0.84451 0.74902 1.43913 1.10926 1.08601 1.80607 1.90717 1.14393 1.87134 1.50461 1.18163 0.92614 0.88056 0.84235 1.20060 0.91000 1.07830 1.24528 0.87660 1.26178 1.02163 0.93316 0.93448 1.69739 1.39058 1.13535 1.17949 0.86174 0.81072 0.78903 0.79566 1.18499 1.20325 1.18596 1.20498 0.89260 0.98712 1.12995 0.93576 0.89813 0.93532 0.88352 0.88779 0.78236 0.78398 0.90390 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 9.79 101.05 0.99 1.54 15 2 O -0.33 -7.05 10.47 -18.97 -0.20 -7.25 15 3 C 0.15 3.55 6.67 -39.24 -0.26 3.29 15 4 C -0.33 -7.09 8.98 -39.34 -0.35 -7.44 15 5 C -0.02 -0.40 9.51 -39.25 -0.37 -0.77 15 6 C -0.29 -7.17 6.07 -102.48 -0.62 -7.79 15 7 C 0.57 13.21 8.00 -12.60 -0.10 13.11 15 8 N -0.88 -14.81 8.82 30.39 0.27 -14.54 15 9 O -0.55 -14.71 14.65 5.25 0.08 -14.63 15 10 C 0.17 4.75 5.63 -104.67 -0.59 4.16 15 11 C -0.41 -11.29 7.76 -37.80 -0.29 -11.58 15 12 H 0.11 3.00 6.11 -52.48 -0.32 2.68 15 13 C 0.07 1.79 5.23 -17.30 -0.09 1.70 15 14 N -0.78 -20.52 11.28 55.56 0.63 -19.89 15 15 Si 0.92 19.62 29.57 -169.99 -5.03 14.60 15 16 H -0.26 -5.67 7.11 56.52 0.40 -5.27 15 17 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15 18 H -0.26 -5.45 7.11 56.52 0.40 -5.05 15 19 C -0.19 -5.16 8.56 -38.72 -0.33 -5.49 15 20 H 0.05 0.66 7.62 -51.93 -0.40 0.26 15 21 H 0.08 1.04 8.14 -51.93 -0.42 0.61 15 22 H 0.05 0.68 7.62 -51.93 -0.40 0.29 15 23 H 0.10 1.81 6.17 -52.48 -0.32 1.49 15 24 H 0.09 1.60 6.47 -52.48 -0.34 1.26 15 25 H 0.39 5.45 6.92 -40.82 -0.28 5.16 15 26 H 0.39 5.66 8.93 -40.82 -0.36 5.29 15 27 H 0.29 6.81 8.29 -40.82 -0.34 6.47 15 28 H 0.12 3.38 6.71 -52.49 -0.35 3.03 15 LS Contribution 245.30 15.07 3.70 3.70 Total: -1.00 -31.40 245.30 -4.91 -36.32 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -2.33 Total: 10.97 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -2.03 Total: -9.27 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.90 Total: -34.43 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.12 Total: -21.88 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.40 -4.91 -36.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220924679.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.769 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds