Wall clock time and date at job start Mon Mar 30 2020 02:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35753 * 116.99929 * 2 1 4 4 C 1.39207 * 119.48390 * 359.97438 * 3 2 1 5 5 C 1.37914 * 121.21234 * 180.02562 * 4 3 2 6 6 C 1.39448 * 120.12263 * 359.97438 * 5 4 3 7 7 C 1.47236 * 120.50517 * 179.97438 * 6 5 4 8 8 N 1.34780 * 119.99872 * 353.61161 * 7 6 5 9 9 O 1.21635 * 120.00193 * 173.61811 * 7 6 5 10 10 C 1.46472 * 118.99448 * 359.97438 * 6 5 4 11 11 C 1.40945 * 120.57333 * 179.97438 * 10 6 5 12 12 H 1.08005 * 119.99960 * 325.53056 * 11 10 6 13 13 C 1.40245 * 120.00040 * 145.80711 * 11 10 6 14 14 N 1.30641 * 119.99702 * 349.04114 * 13 11 10 15 15 Si 1.86799 * 119.99878 * 169.04575 * 13 11 10 16 16 H 1.48500 * 109.47403 * 59.99688 * 15 13 11 17 17 H 1.48495 * 109.46873 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46909 * 299.99880 * 15 13 11 19 19 C 1.38185 * 119.48493 * 180.23432 * 3 2 1 20 20 H 1.09003 * 109.46597 * 60.00568 * 1 2 3 21 21 H 1.08993 * 109.47179 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47215 * 300.00664 * 1 2 3 23 23 H 1.08006 * 119.39494 * 0.02562 * 4 3 2 24 24 H 1.08003 * 119.93954 * 179.97438 * 5 4 3 25 25 H 0.96998 * 119.99707 * 0.02562 * 8 7 6 26 26 H 0.96993 * 119.99759 * 180.02562 * 8 7 6 27 27 H 0.96996 * 119.99844 * 179.97438 * 14 13 11 28 28 H 1.08000 * 120.10760 * 0.02562 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2767 2.3702 -0.0005 5 6 1.8654 3.6173 -0.0011 6 6 3.2549 3.7353 -0.0006 7 6 3.8923 5.0625 -0.0017 8 7 3.1385 6.1720 -0.1331 9 8 5.0992 5.1577 0.1158 10 6 4.0707 2.5188 0.0011 11 6 5.4779 2.5992 0.0012 12 1 5.9730 3.3992 -0.5292 13 6 6.2352 1.6372 0.6851 14 7 5.6469 0.7969 1.4941 15 14 8.0853 1.5575 0.4393 16 1 8.6948 2.8492 0.8457 17 1 8.6481 0.4623 1.2694 18 1 8.3837 1.2979 -0.9920 19 6 3.4259 1.2695 -0.0049 20 1 -0.3632 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 0.1994 2.2925 -0.0005 24 1 1.2492 4.5043 -0.0019 25 1 2.1760 6.0961 -0.2266 26 1 3.5584 7.0463 -0.1343 27 1 6.1706 0.1313 1.9668 28 1 4.0077 0.3596 -0.0091 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220924679.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:29 Heat of formation + Delta-G solvation = -85.158698 kcal Electronic energy + Delta-G solvation = -14694.543648 eV Core-core repulsion = 12095.383024 eV Total energy + Delta-G solvation = -2599.160624 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.67579 -39.79224 -37.45045 -35.58418 -34.25055 -31.55934 -30.82763 -28.20410 -27.04000 -24.03209 -22.78820 -21.04543 -19.67868 -18.28263 -17.97042 -17.49007 -16.71822 -16.37987 -16.26652 -15.60861 -15.25252 -14.77123 -14.37604 -13.94975 -13.52140 -13.09322 -12.97292 -12.85040 -12.68126 -12.48807 -11.96168 -11.60492 -11.31898 -11.09460 -10.44753 -10.35064 -9.36084 -8.86823 -8.63730 -6.43530 0.52118 0.97692 1.34578 1.47243 1.51916 2.20369 2.36101 2.68886 2.79723 3.05155 3.64858 4.19590 4.45693 4.49337 4.50548 4.67306 4.77611 4.92880 5.07899 5.21621 5.48390 5.70879 5.76793 5.94151 6.04242 6.23100 6.48727 6.74939 6.83621 6.89362 7.01170 7.79521 8.25614 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.020990 B = 0.012799 C = 0.008154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.647183 B = 2187.178252 C = 3433.195553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.350 6.350 3 C 0.153 3.847 4 C -0.322 4.322 5 C -0.009 4.009 6 C -0.315 4.315 7 C 0.563 3.437 8 N -0.844 5.844 9 O -0.593 6.593 10 C 0.146 3.854 11 C -0.449 4.449 12 H 0.086 0.914 13 C 0.030 3.970 14 N -0.813 5.813 15 Si 0.984 3.016 16 H -0.268 1.268 17 H -0.259 1.259 18 H -0.255 1.255 19 C -0.232 4.232 20 H 0.063 0.937 21 H 0.115 0.885 22 H 0.058 0.942 23 H 0.141 0.859 24 H 0.147 0.853 25 H 0.409 0.591 26 H 0.403 0.597 27 H 0.292 0.708 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.725 2.366 -2.154 9.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.264 6.264 3 C 0.108 3.892 4 C -0.341 4.341 5 C -0.027 4.027 6 C -0.320 4.320 7 C 0.355 3.645 8 N -0.409 5.409 9 O -0.476 6.476 10 C 0.142 3.858 11 C -0.477 4.477 12 H 0.103 0.897 13 C -0.187 4.187 14 N -0.438 5.438 15 Si 0.804 3.196 16 H -0.193 1.193 17 H -0.183 1.183 18 H -0.179 1.179 19 C -0.252 4.252 20 H 0.082 0.918 21 H 0.133 0.867 22 H 0.077 0.923 23 H 0.159 0.841 24 H 0.164 0.836 25 H 0.240 0.760 26 H 0.234 0.766 27 H 0.102 0.898 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.870 1.855 -1.900 8.306 hybrid contribution 0.364 0.207 0.105 0.432 sum -7.506 2.063 -1.794 7.989 Atomic orbital electron populations 1.23227 0.77125 1.04786 1.01953 1.85972 1.23246 1.28275 1.88907 1.19151 0.91824 0.84355 0.93893 1.20718 0.99449 0.91500 1.22453 1.20928 0.92207 0.97331 0.92256 1.20782 0.93984 0.92015 1.25237 1.18255 0.86000 0.85508 0.74733 1.43458 1.11579 1.07638 1.78227 1.90697 1.16447 1.87840 1.52625 1.18552 0.93198 0.89576 0.84510 1.20068 0.91988 1.08780 1.26890 0.89651 1.26940 1.06442 0.92630 0.92674 1.69781 1.40686 1.14448 1.18924 0.85232 0.75543 0.78840 0.79960 1.19322 1.18259 1.17910 1.20354 0.90843 0.97674 1.16319 0.91824 0.86659 0.92300 0.84148 0.83569 0.75971 0.76567 0.89776 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.79 113.37 1.11 1.75 15 2 O -0.35 -14.53 10.47 -90.78 -0.95 -15.48 15 3 C 0.15 7.17 6.67 22.49 0.15 7.32 15 4 C -0.32 -12.73 8.98 22.43 0.20 -12.53 15 5 C -0.01 -0.34 9.51 22.48 0.21 -0.12 15 6 C -0.32 -15.38 6.07 -18.47 -0.11 -15.49 15 7 C 0.56 25.90 8.00 86.61 0.69 26.59 15 8 N -0.84 -26.09 8.82 -176.00 -1.55 -27.64 15 9 O -0.59 -32.63 14.65 -4.14 -0.06 -32.69 15 10 C 0.15 8.27 5.63 -19.90 -0.11 8.16 15 11 C -0.45 -26.36 7.76 23.42 0.18 -26.18 15 12 H 0.09 5.19 6.11 -2.91 -0.02 5.17 15 13 C 0.03 1.60 5.23 85.36 0.45 2.05 15 14 N -0.81 -44.96 11.28 21.88 0.25 -44.71 15 15 Si 0.98 41.98 29.57 68.60 2.03 44.01 15 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 17 H -0.26 -10.06 7.11 99.48 0.71 -9.35 15 18 H -0.26 -10.45 7.11 99.48 0.71 -9.75 15 19 C -0.23 -12.73 8.56 22.83 0.20 -12.53 15 20 H 0.06 1.52 7.62 -2.39 -0.02 1.50 15 21 H 0.12 2.40 8.14 -2.39 -0.02 2.38 15 22 H 0.06 1.47 7.62 -2.39 -0.02 1.45 15 23 H 0.14 4.35 6.17 -2.91 -0.02 4.33 15 24 H 0.15 4.11 6.47 -2.91 -0.02 4.09 15 25 H 0.41 9.57 6.92 -92.71 -0.64 8.93 15 26 H 0.40 10.63 8.93 -92.71 -0.83 9.80 15 27 H 0.29 14.52 8.29 -92.71 -0.77 13.76 15 28 H 0.10 5.64 6.71 -2.91 -0.02 5.62 15 Total: -1.00 -72.95 245.30 2.43 -70.52 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: -0.25 Total: 27.00 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 2.97 Total: -21.00 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -1.31 Total: -72.36 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -1.01 Total: -48.17 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -72.95 2.43 -70.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220924679.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.639 kcal (2) G-P(sol) polarization free energy of solvation -72.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds