Wall clock time and date at job start Mon Mar 30 2020 02:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99843 * 2 1 4 4 H 1.48500 * 109.46882 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47269 * 300.00041 * 3 2 1 6 6 H 1.48505 * 109.47002 * 60.00074 * 3 2 1 7 7 C 1.37873 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00461 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99855 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47368 * 179.97438 * 9 7 2 11 11 C 1.47910 * 110.99828 * 309.92823 * 10 9 7 12 12 C 1.54604 * 102.61982 * 149.19540 * 11 10 9 13 13 C 1.51584 * 102.85038 * 334.50371 * 12 11 10 14 14 C 1.37941 * 131.52784 * 196.11635 * 13 12 11 15 15 C 1.38255 * 120.11061 * 179.04812 * 14 13 12 16 16 C 1.38540 * 119.86002 * 0.56296 * 15 14 13 17 17 F 1.35104 * 119.89379 * 179.86470 * 16 15 14 18 18 C 1.38122 * 120.20696 * 359.59731 * 16 15 14 19 19 C 1.38989 * 107.95084 * 15.76897 * 13 12 11 20 20 H 0.97008 * 120.00415 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47197 * 59.99669 * 9 7 2 22 22 H 1.09000 * 109.47373 * 300.00013 * 9 7 2 23 23 H 1.08996 * 110.77998 * 30.91589 * 11 10 9 24 24 H 1.08999 * 110.94020 * 267.55165 * 11 10 9 25 25 H 1.08995 * 110.73347 * 216.16440 * 12 11 10 26 26 H 1.09004 * 110.73268 * 92.84085 * 12 11 10 27 27 H 1.07994 * 119.93983 * 359.31794 * 14 13 12 28 28 H 1.07995 * 120.06899 * 180.29832 * 15 14 13 29 29 H 1.08008 * 119.91046 * 180.26969 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 3.2238 -3.4426 -1.0584 12 6 4.4662 -4.1313 -0.4482 13 6 4.2141 -4.0223 1.0425 14 6 5.0545 -4.1744 2.1257 15 6 4.5705 -3.9999 3.4090 16 6 3.2362 -3.6832 3.6058 17 9 2.7619 -3.5152 4.8597 18 6 2.3907 -3.5332 2.5240 19 6 2.8737 -3.7047 1.2281 20 1 -0.4851 0.8401 0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 3.4176 -2.3854 -1.2394 24 1 2.9179 -3.9412 -1.9781 25 1 5.3768 -3.6003 -0.7255 26 1 4.5183 -5.1758 -0.7555 27 1 6.0932 -4.4260 1.9708 28 1 5.2302 -4.1144 4.2563 29 1 1.3523 -3.2820 2.6828 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224315934.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:09 Heat of formation + Delta-G solvation = -11.558817 kcal Electronic energy + Delta-G solvation = -14809.232973 eV Core-core repulsion = 12225.636669 eV Total energy + Delta-G solvation = -2583.596304 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.41725 -40.02440 -36.00734 -33.09119 -31.67469 -29.43484 -27.94683 -26.35961 -23.08304 -22.52031 -20.89986 -20.12419 -17.03754 -16.46388 -16.11815 -15.21123 -15.12283 -14.83578 -14.46621 -13.90480 -13.56229 -13.09389 -12.59039 -12.24476 -11.94390 -11.65779 -11.22912 -11.18679 -10.98225 -10.75414 -10.53501 -10.45258 -10.04760 -9.97520 -8.93550 -8.56538 -8.18437 -7.03134 -6.16663 -4.26364 1.69728 1.84743 3.21004 3.29575 3.33007 4.03104 4.31460 4.52159 4.90792 5.08733 5.16108 5.29416 5.42320 5.55967 5.73654 5.83835 6.03169 6.22338 6.30698 6.44552 6.57404 6.62470 6.69861 6.93463 6.97189 7.30422 7.35842 7.69380 7.74811 8.00694 8.07615 8.79888 9.40708 10.89168 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.024921 B = 0.010692 C = 0.009159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.264921 B = 2618.232642 C = 3056.507974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.069 3.931 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.552 4.552 8 H 0.064 0.936 9 C 0.179 3.821 10 N -0.483 5.483 11 C 0.043 3.957 12 C -0.080 4.080 13 C -0.170 4.170 14 C -0.057 4.057 15 C -0.202 4.202 16 C 0.120 3.880 17 F -0.146 7.146 18 C -0.171 4.171 19 C 0.176 3.824 20 H 0.264 0.736 21 H 0.041 0.959 22 H 0.038 0.962 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.188 -6.815 1.783 10.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.591 4.591 8 H 0.082 0.918 9 C 0.056 3.944 10 N -0.195 5.195 11 C -0.083 4.083 12 C -0.117 4.117 13 C -0.173 4.173 14 C -0.076 4.076 15 C -0.222 4.222 16 C 0.100 3.900 17 F -0.125 7.125 18 C -0.193 4.193 19 C 0.074 3.926 20 H 0.074 0.926 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.107 0.893 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.140 0.860 28 H 0.144 0.856 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.621 -7.119 1.612 10.552 hybrid contribution 0.536 1.672 0.418 1.805 sum 8.157 -5.446 2.029 10.016 Atomic orbital electron populations 1.69944 1.06066 1.27124 1.49363 1.24935 0.94806 0.99311 0.94459 0.86521 0.80179 0.83504 0.77820 1.19641 1.20750 1.20740 1.21659 0.93378 0.91340 1.52700 0.91838 1.20030 0.90699 0.84670 0.99009 1.60798 1.15712 1.42506 1.00443 1.23305 0.88506 1.02265 0.94252 1.21261 0.98953 1.00827 0.90668 1.20597 0.93877 1.07190 0.95627 1.20016 0.98753 0.98306 0.90492 1.20689 0.93971 1.09716 0.97836 1.17261 0.92533 1.01547 0.78655 1.91447 1.89107 1.93245 1.38703 1.20296 1.01141 1.07927 0.89973 1.19367 0.91304 0.91166 0.90765 0.92585 0.94095 0.94346 0.89295 0.90187 0.90846 0.90583 0.86024 0.85559 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 13.29 55.43 0.74 -24.72 15 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 15 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 15 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 15 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 7 C -0.55 -14.73 7.52 -34.44 -0.26 -14.99 15 8 H 0.06 1.69 6.26 -52.49 -0.33 1.36 15 9 C 0.18 4.50 5.12 -4.98 -0.03 4.47 15 10 N -0.48 -10.43 5.29 -170.38 -0.90 -11.33 15 11 C 0.04 0.79 6.57 -2.42 -0.02 0.78 15 12 C -0.08 -1.25 7.04 -26.60 -0.19 -1.44 15 13 C -0.17 -3.06 6.23 -104.02 -0.65 -3.70 15 14 C -0.06 -0.90 10.03 -39.68 -0.40 -1.30 15 15 C -0.20 -3.28 10.04 -39.46 -0.40 -3.67 15 16 C 0.12 2.23 7.28 -39.51 -0.29 1.95 15 17 F -0.15 -2.68 17.26 2.25 0.04 -2.64 15 18 C -0.17 -3.54 9.46 -39.21 -0.37 -3.92 15 19 C 0.18 3.66 5.35 -83.41 -0.45 3.21 15 20 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 21 H 0.04 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.04 1.03 6.86 -51.93 -0.36 0.67 15 23 H 0.09 1.82 5.51 -51.93 -0.29 1.54 15 24 H 0.08 1.32 8.14 -51.93 -0.42 0.90 15 25 H 0.07 1.02 8.14 -51.93 -0.42 0.59 15 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 27 H 0.12 1.51 8.06 -52.49 -0.42 1.09 15 28 H 0.13 1.69 8.06 -52.49 -0.42 1.27 15 29 H 0.13 2.81 7.17 -52.48 -0.38 2.43 15 LS Contribution 249.57 15.07 3.76 3.76 Total: -1.00 -28.54 249.57 -7.54 -36.08 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -3.02 Total: -0.40 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -3.13 Total: -16.83 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: -0.17 Total: -36.05 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.54 -7.54 -36.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224315934.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.522 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds