Wall clock time and date at job start Mon Mar 30 2020 02:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99843 * 2 1 4 4 H 1.48500 * 109.46882 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47269 * 300.00041 * 3 2 1 6 6 H 1.48505 * 109.47002 * 60.00074 * 3 2 1 7 7 C 1.37873 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00461 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99855 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47368 * 179.97438 * 9 7 2 11 11 C 1.47910 * 110.99828 * 309.92823 * 10 9 7 12 12 C 1.54604 * 102.61982 * 149.19540 * 11 10 9 13 13 C 1.51584 * 102.85038 * 334.50371 * 12 11 10 14 14 C 1.37941 * 131.52784 * 196.11635 * 13 12 11 15 15 C 1.38255 * 120.11061 * 179.04812 * 14 13 12 16 16 C 1.38540 * 119.86002 * 0.56296 * 15 14 13 17 17 F 1.35104 * 119.89379 * 179.86470 * 16 15 14 18 18 C 1.38122 * 120.20696 * 359.59731 * 16 15 14 19 19 C 1.38989 * 107.95084 * 15.76897 * 13 12 11 20 20 H 0.97008 * 120.00415 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47197 * 59.99669 * 9 7 2 22 22 H 1.09000 * 109.47373 * 300.00013 * 9 7 2 23 23 H 1.08996 * 110.77998 * 30.91589 * 11 10 9 24 24 H 1.08999 * 110.94020 * 267.55165 * 11 10 9 25 25 H 1.08995 * 110.73347 * 216.16440 * 12 11 10 26 26 H 1.09004 * 110.73268 * 92.84085 * 12 11 10 27 27 H 1.07994 * 119.93983 * 359.31794 * 14 13 12 28 28 H 1.07995 * 120.06899 * 180.29832 * 15 14 13 29 29 H 1.08008 * 119.91046 * 180.26969 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 3.2238 -3.4426 -1.0584 12 6 4.4662 -4.1313 -0.4482 13 6 4.2141 -4.0223 1.0425 14 6 5.0545 -4.1744 2.1257 15 6 4.5705 -3.9999 3.4090 16 6 3.2362 -3.6832 3.6058 17 9 2.7619 -3.5152 4.8597 18 6 2.3907 -3.5332 2.5240 19 6 2.8737 -3.7047 1.2281 20 1 -0.4851 0.8401 0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 3.4176 -2.3854 -1.2394 24 1 2.9179 -3.9412 -1.9781 25 1 5.3768 -3.6003 -0.7255 26 1 4.5183 -5.1758 -0.7555 27 1 6.0932 -4.4260 1.9708 28 1 5.2302 -4.1144 4.2563 29 1 1.3523 -3.2820 2.6828 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224315934.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:09 Heat of formation + Delta-G solvation = -28.707370 kcal Electronic energy + Delta-G solvation = -14809.976590 eV Core-core repulsion = 12225.636669 eV Total energy + Delta-G solvation = -2584.339921 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.86474 -41.51142 -37.52181 -35.02020 -33.27072 -31.00544 -29.36423 -28.24465 -24.92984 -23.94557 -22.29785 -21.72237 -18.89682 -18.09542 -17.66349 -16.71086 -16.56178 -16.52165 -16.09154 -15.54177 -15.06675 -14.49960 -14.37883 -13.82480 -13.58655 -13.22511 -12.94771 -12.75678 -12.53267 -12.37521 -12.23468 -12.06609 -11.82654 -11.79332 -10.69119 -10.56874 -9.61549 -8.64887 -8.20645 -6.43038 0.27527 0.42588 1.33967 1.35927 1.47303 2.32621 2.60375 3.03355 3.05843 3.53635 3.70244 3.85694 4.07849 4.26523 4.38840 4.51732 4.59965 4.87507 4.95150 4.99344 5.13590 5.18474 5.20992 5.25839 5.32069 5.54746 5.64541 5.85976 5.91119 6.12296 6.38354 6.72570 7.27686 8.80166 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.024921 B = 0.010692 C = 0.009159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.264921 B = 2618.232642 C = 3056.507974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.960 3.040 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.282 1.282 7 C -0.552 4.552 8 H 0.065 0.935 9 C 0.194 3.806 10 N -0.492 5.492 11 C 0.036 3.964 12 C -0.067 4.067 13 C -0.169 4.169 14 C -0.046 4.046 15 C -0.184 4.184 16 C 0.104 3.896 17 F -0.149 7.149 18 C -0.200 4.200 19 C 0.136 3.864 20 H 0.267 0.733 21 H 0.017 0.983 22 H 0.006 0.994 23 H 0.065 0.935 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.171 0.829 28 H 0.164 0.836 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.696 -7.229 1.833 13.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.784 3.216 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.208 1.208 7 C -0.591 4.591 8 H 0.083 0.917 9 C 0.070 3.930 10 N -0.204 5.204 11 C -0.090 4.090 12 C -0.104 4.104 13 C -0.172 4.172 14 C -0.064 4.064 15 C -0.204 4.204 16 C 0.084 3.916 17 F -0.128 7.128 18 C -0.222 4.222 19 C 0.036 3.964 20 H 0.076 0.924 21 H 0.035 0.965 22 H 0.024 0.976 23 H 0.084 0.916 24 H 0.115 0.885 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.188 0.812 28 H 0.182 0.818 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.150 -7.553 1.667 13.571 hybrid contribution -0.534 1.724 0.458 1.862 sum 10.617 -5.829 2.125 12.297 Atomic orbital electron populations 1.70068 1.07675 1.28084 1.50651 1.25820 0.95619 1.02984 0.94225 0.85476 0.79147 0.79082 0.77886 1.18675 1.19812 1.20789 1.21867 0.93443 0.92001 1.51762 0.91726 1.19609 0.91118 0.86147 0.96163 1.60781 1.16553 1.41012 1.02075 1.23416 0.89531 1.01587 0.94451 1.21301 0.98151 1.02401 0.88566 1.21030 0.92518 1.05985 0.97674 1.20545 1.00572 0.96098 0.89204 1.21171 0.92773 1.06838 0.99598 1.17472 0.93604 1.02496 0.77979 1.91434 1.89375 1.93366 1.38628 1.20322 1.00496 1.09931 0.91426 1.19577 0.93105 0.93611 0.90131 0.92430 0.96534 0.97560 0.91634 0.88473 0.88047 0.87833 0.81169 0.81837 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.98 13.29 21.45 0.28 -54.70 15 2 C 0.01 0.75 5.46 84.65 0.46 1.21 15 3 Si 0.96 43.58 29.54 68.60 2.03 45.61 15 4 H -0.26 -11.43 7.11 99.48 0.71 -10.73 15 5 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 7 C -0.55 -30.27 7.52 25.60 0.19 -30.08 15 8 H 0.06 3.47 6.26 -2.91 -0.02 3.45 15 9 C 0.19 10.32 5.12 85.56 0.44 10.76 15 10 N -0.49 -21.74 5.29 -692.97 -3.67 -25.41 15 11 C 0.04 1.29 6.57 86.65 0.57 1.86 15 12 C -0.07 -1.86 7.04 30.68 0.22 -1.65 15 13 C -0.17 -5.59 6.23 -19.47 -0.12 -5.71 15 14 C -0.05 -1.23 10.03 22.20 0.22 -1.00 15 15 C -0.18 -5.27 10.04 22.35 0.22 -5.05 15 16 C 0.10 3.81 7.28 22.31 0.16 3.97 15 17 F -0.15 -5.44 17.26 44.97 0.78 -4.66 15 18 C -0.20 -8.56 9.46 22.51 0.21 -8.35 15 19 C 0.14 5.70 5.35 38.28 0.20 5.91 15 20 H 0.27 14.88 8.31 -92.70 -0.77 14.11 15 21 H 0.02 0.94 8.14 -2.39 -0.02 0.92 15 22 H 0.01 0.36 6.86 -2.39 -0.02 0.35 15 23 H 0.07 2.66 5.51 -2.39 -0.01 2.65 15 24 H 0.10 3.10 8.14 -2.39 -0.02 3.08 15 25 H 0.10 2.29 8.14 -2.39 -0.02 2.27 15 26 H 0.10 2.37 8.14 -2.39 -0.02 2.35 15 27 H 0.17 2.97 8.06 -2.91 -0.02 2.95 15 28 H 0.16 3.48 8.06 -2.91 -0.02 3.45 15 29 H 0.10 4.84 7.17 -2.91 -0.02 4.82 15 Total: -1.00 -64.25 249.57 3.36 -60.89 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 1.16 Total: 6.39 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 2.78 Total: -28.13 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -3.38 Total: -80.11 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.78 Total: -4.66 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -64.25 3.36 -60.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224315934.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.187 kcal (2) G-P(sol) polarization free energy of solvation -64.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds