Wall clock time and date at job start Mon Mar 30 2020 03:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99671 * 2 1 4 4 H 1.48500 * 109.47517 * 269.99836 * 3 2 1 5 5 H 1.48496 * 109.47375 * 30.00367 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00063 * 3 2 1 7 7 C 1.38945 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00271 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99860 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99634 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00456 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99675 * 179.72687 * 10 9 7 13 13 C 1.50703 * 109.47148 * 180.28037 * 12 10 9 14 14 C 1.38274 * 119.53850 * 125.00120 * 13 12 10 15 15 C 1.38493 * 119.24130 * 179.97438 * 14 13 12 16 16 C 1.39308 * 118.35730 * 359.97438 * 15 14 13 17 17 N 1.39714 * 120.48995 * 179.97438 * 16 15 14 18 18 C 1.38889 * 119.01883 * 359.97438 * 16 15 14 19 19 N 1.31821 * 120.65401 * 359.74455 * 18 16 15 20 20 H 0.97004 * 120.00488 * 0.02562 * 1 2 3 21 21 H 0.97001 * 119.99881 * 0.02562 * 9 7 2 22 22 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 23 23 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 24 24 H 1.07998 * 120.37784 * 359.94941 * 14 13 12 25 25 H 1.07996 * 120.81916 * 180.02562 * 15 14 13 26 26 H 0.96997 * 120.00037 * 0.02562 * 17 16 15 27 27 H 0.96996 * 119.99861 * 179.97438 * 17 16 15 28 28 H 1.07998 * 119.67678 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5455 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2032 -0.0011 10 6 4.0537 -2.3704 -0.0011 11 8 3.4473 -3.4209 -0.0011 12 6 5.5607 -2.3704 -0.0079 13 6 6.0631 -3.7912 -0.0134 14 6 6.9364 -4.2016 -1.0037 15 6 7.3947 -5.5085 -1.0026 16 6 6.9537 -6.3634 0.0051 17 7 7.3873 -7.6909 0.0486 18 6 6.0767 -5.8766 0.9657 19 7 5.6695 -4.6234 0.9306 20 1 -0.4851 0.8400 -0.0004 21 1 3.8648 -0.3631 -0.0007 22 1 5.9201 -1.8545 -0.8984 23 1 5.9281 -1.8586 0.8816 24 1 7.2572 -3.5110 -1.7696 25 1 8.0776 -5.8561 -1.7636 26 1 8.0001 -8.0233 -0.6257 27 1 7.0760 -8.2798 0.7537 28 1 5.7284 -6.5300 1.7520 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229615327.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:19 Heat of formation + Delta-G solvation = 1.885807 kcal Electronic energy + Delta-G solvation = -14138.604658 eV Core-core repulsion = 11575.511318 eV Total energy + Delta-G solvation = -2563.093340 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.02539 -38.05337 -35.16550 -33.79956 -31.99867 -31.54009 -30.72459 -26.98995 -24.39200 -23.40645 -21.72593 -19.24362 -18.25173 -17.28942 -16.91262 -15.87098 -15.52531 -14.93335 -14.71745 -13.98488 -13.66730 -13.52508 -13.11536 -12.71252 -12.44962 -12.08955 -11.66468 -11.52389 -11.09668 -10.81182 -10.50528 -9.87534 -9.44962 -9.38394 -9.03265 -8.36700 -8.05776 -7.48674 -6.20371 -3.70974 1.50440 1.69372 3.11264 3.14367 3.22200 3.75751 3.91203 4.14451 4.19966 4.79107 4.81274 5.01378 5.04880 5.30028 5.36715 5.59337 5.84412 5.87385 6.01760 6.10271 6.28721 6.41977 6.79545 7.36366 7.62573 7.69042 8.26392 8.52087 8.72479 9.07333 9.54851 9.98024 10.93280 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.066464 B = 0.005946 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.182484 B = 4707.732405 C = 4957.538233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.038 3.962 3 Si 0.880 3.120 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.118 0.882 9 N -0.596 5.596 10 C 0.461 3.539 11 O -0.558 6.558 12 C -0.083 4.083 13 C 0.103 3.897 14 C -0.122 4.122 15 C -0.160 4.160 16 C 0.151 3.849 17 N -0.876 5.876 18 C 0.035 3.965 19 N -0.410 5.410 20 H 0.272 0.728 21 H 0.370 0.630 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.131 0.869 25 H 0.127 0.873 26 H 0.396 0.604 27 H 0.398 0.602 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.553 -7.650 -1.237 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.164 4.164 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.136 0.864 9 N -0.236 5.236 10 C 0.246 3.754 11 O -0.439 6.439 12 C -0.124 4.124 13 C -0.037 4.037 14 C -0.143 4.143 15 C -0.190 4.190 16 C 0.045 3.955 17 N -0.416 5.416 18 C -0.129 4.129 19 N -0.117 5.117 20 H 0.082 0.918 21 H 0.203 0.797 22 H 0.110 0.890 23 H 0.112 0.888 24 H 0.149 0.851 25 H 0.145 0.855 26 H 0.223 0.777 27 H 0.226 0.774 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 16.334 -7.883 -0.592 18.147 hybrid contribution 1.218 0.670 -0.696 1.554 sum 17.552 -7.213 -1.288 19.020 Atomic orbital electron populations 1.69626 1.05633 1.27291 1.50182 1.25023 0.95481 0.97911 0.97949 0.86667 0.79850 0.84092 0.78768 1.19741 1.20342 1.19399 1.19434 0.79396 0.96534 1.47546 0.86434 1.42207 1.07425 1.06097 1.67907 1.19561 0.87934 0.84483 0.83401 1.90581 1.69480 1.30941 1.52938 1.20455 0.95807 0.92571 1.03616 1.20378 0.95551 0.95436 0.92360 1.21692 0.97844 0.95892 0.98830 1.20883 1.04491 0.93937 0.99721 1.18862 0.95170 0.85882 0.95551 1.42268 1.55094 1.09155 1.35122 1.22248 0.98230 0.93247 0.99155 1.67299 1.18061 1.02539 1.23851 0.91788 0.79731 0.89012 0.88793 0.85095 0.85534 0.77664 0.77351 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.96 55.50 0.77 -25.89 15 2 C 0.04 1.09 5.50 -17.47 -0.10 0.99 15 3 Si 0.88 19.91 27.74 -169.99 -4.71 15.20 15 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 6 H -0.27 -5.55 6.52 56.52 0.37 -5.18 15 7 C -0.30 -8.81 10.16 -14.93 -0.15 -8.97 15 8 H 0.12 3.95 7.39 -52.49 -0.39 3.56 15 9 N -0.60 -14.83 5.09 -10.96 -0.06 -14.88 15 10 C 0.46 11.11 7.71 -10.98 -0.08 11.02 15 11 O -0.56 -15.97 14.92 5.55 0.08 -15.89 15 12 C -0.08 -1.47 6.10 -29.03 -0.18 -1.65 15 13 C 0.10 1.84 5.75 -82.57 -0.48 1.36 15 14 C -0.12 -1.74 9.70 -39.47 -0.38 -2.13 15 15 C -0.16 -2.02 10.05 -39.09 -0.39 -2.41 15 16 C 0.15 1.95 6.79 -83.63 -0.57 1.38 15 17 N -0.88 -7.51 9.10 32.49 0.30 -7.22 15 18 C 0.04 0.55 11.06 -17.32 -0.19 0.36 15 19 N -0.41 -7.97 9.23 -9.30 -0.09 -8.06 15 20 H 0.27 7.54 8.31 -40.82 -0.34 7.20 15 21 H 0.37 8.00 5.76 -40.82 -0.24 7.77 15 22 H 0.09 1.29 7.87 -51.92 -0.41 0.88 15 23 H 0.09 1.48 8.14 -51.93 -0.42 1.05 15 24 H 0.13 1.48 7.94 -52.49 -0.42 1.06 15 25 H 0.13 1.20 8.06 -52.49 -0.42 0.78 15 26 H 0.40 2.52 8.86 -40.82 -0.36 2.16 15 27 H 0.40 2.72 8.85 -40.82 -0.36 2.36 15 28 H 0.15 1.95 8.06 -52.49 -0.42 1.53 15 LS Contribution 252.82 15.07 3.81 3.81 Total: -1.00 -36.28 252.82 -5.02 -41.30 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -2.61 Total: 11.67 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.52 Total: -0.04 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.93 Total: -56.05 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.08 Total: -15.89 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.71 Total: 15.20 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -36.28 -5.02 -41.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229615327.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.186 kcal (2) G-P(sol) polarization free energy of solvation -36.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds