Wall clock time and date at job start Mon Mar 30 2020 03:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99671 * 2 1 4 4 H 1.48500 * 109.47517 * 269.99836 * 3 2 1 5 5 H 1.48496 * 109.47375 * 30.00367 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00063 * 3 2 1 7 7 C 1.38945 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00271 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99860 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99634 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00456 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99675 * 179.72687 * 10 9 7 13 13 C 1.50703 * 109.47148 * 180.28037 * 12 10 9 14 14 C 1.38274 * 119.53850 * 125.00120 * 13 12 10 15 15 C 1.38493 * 119.24130 * 179.97438 * 14 13 12 16 16 C 1.39308 * 118.35730 * 359.97438 * 15 14 13 17 17 N 1.39714 * 120.48995 * 179.97438 * 16 15 14 18 18 C 1.38889 * 119.01883 * 359.97438 * 16 15 14 19 19 N 1.31821 * 120.65401 * 359.74455 * 18 16 15 20 20 H 0.97004 * 120.00488 * 0.02562 * 1 2 3 21 21 H 0.97001 * 119.99881 * 0.02562 * 9 7 2 22 22 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 23 23 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 24 24 H 1.07998 * 120.37784 * 359.94941 * 14 13 12 25 25 H 1.07996 * 120.81916 * 180.02562 * 15 14 13 26 26 H 0.96997 * 120.00037 * 0.02562 * 17 16 15 27 27 H 0.96996 * 119.99861 * 179.97438 * 17 16 15 28 28 H 1.07998 * 119.67678 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5455 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2032 -0.0011 10 6 4.0537 -2.3704 -0.0011 11 8 3.4473 -3.4209 -0.0011 12 6 5.5607 -2.3704 -0.0079 13 6 6.0631 -3.7912 -0.0134 14 6 6.9364 -4.2016 -1.0037 15 6 7.3947 -5.5085 -1.0026 16 6 6.9537 -6.3634 0.0051 17 7 7.3873 -7.6909 0.0486 18 6 6.0767 -5.8766 0.9657 19 7 5.6695 -4.6234 0.9306 20 1 -0.4851 0.8400 -0.0004 21 1 3.8648 -0.3631 -0.0007 22 1 5.9201 -1.8545 -0.8984 23 1 5.9281 -1.8586 0.8816 24 1 7.2572 -3.5110 -1.7696 25 1 8.0776 -5.8561 -1.7636 26 1 8.0001 -8.0233 -0.6257 27 1 7.0760 -8.2798 0.7537 28 1 5.7284 -6.5300 1.7520 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229615327.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:19 Heat of formation + Delta-G solvation = -28.438668 kcal Electronic energy + Delta-G solvation = -14139.919626 eV Core-core repulsion = 11575.511318 eV Total energy + Delta-G solvation = -2564.408308 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.20201 -39.89110 -36.29706 -35.77756 -33.74453 -33.07947 -31.93772 -28.37414 -26.26578 -24.51289 -22.94876 -21.20370 -20.22196 -18.33110 -17.85339 -17.55111 -16.94225 -16.57388 -16.05029 -15.52326 -15.18841 -14.88777 -14.62257 -14.26564 -14.00147 -13.69871 -13.15249 -12.80896 -12.73194 -12.37653 -11.97034 -11.89834 -11.45730 -10.51704 -10.33486 -10.19560 -10.12708 -8.45846 -8.37694 -5.98078 0.42133 0.62452 1.33280 1.39008 1.47863 2.05510 2.26894 2.85012 2.96463 3.17399 3.27687 3.66562 3.94412 4.04277 4.25872 4.38132 4.56542 4.69798 4.84857 4.88006 5.19347 5.33109 5.58863 5.78499 5.99264 6.49288 6.64030 6.93382 6.99285 7.38778 7.45980 8.05351 8.80602 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.066464 B = 0.005946 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.182484 B = 4707.732405 C = 4957.538233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.019 4.019 3 Si 0.968 3.032 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.231 1.231 7 C -0.327 4.327 8 H 0.050 0.950 9 N -0.595 5.595 10 C 0.457 3.543 11 O -0.613 6.613 12 C -0.070 4.070 13 C 0.057 3.943 14 C -0.114 4.114 15 C -0.163 4.163 16 C 0.164 3.836 17 N -0.856 5.856 18 C 0.002 3.998 19 N -0.462 5.462 20 H 0.278 0.722 21 H 0.391 0.609 22 H 0.136 0.864 23 H 0.114 0.886 24 H 0.165 0.835 25 H 0.165 0.835 26 H 0.411 0.589 27 H 0.408 0.592 28 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.237 -6.565 -2.301 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.217 4.217 3 Si 0.788 3.212 4 H -0.178 1.178 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.456 4.456 8 H 0.068 0.932 9 N -0.237 5.237 10 C 0.245 3.755 11 O -0.497 6.497 12 C -0.111 4.111 13 C -0.083 4.083 14 C -0.135 4.135 15 C -0.193 4.193 16 C 0.056 3.944 17 N -0.397 5.397 18 C -0.162 4.162 19 N -0.170 5.170 20 H 0.088 0.912 21 H 0.226 0.774 22 H 0.154 0.846 23 H 0.132 0.868 24 H 0.182 0.818 25 H 0.183 0.817 26 H 0.241 0.759 27 H 0.238 0.762 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 20.066 -6.848 -1.657 21.267 hybrid contribution 0.045 0.090 -0.368 0.381 sum 20.112 -6.758 -2.025 21.313 Atomic orbital electron populations 1.69817 1.08218 1.29166 1.50856 1.26158 0.96517 1.02843 0.96175 0.85318 0.79449 0.76385 0.80068 1.17807 1.20142 1.15393 1.18998 0.81720 0.94756 1.50120 0.93219 1.42037 1.05658 1.07552 1.68490 1.20893 0.90878 0.83195 0.80578 1.90550 1.71554 1.32974 1.54584 1.20471 0.89838 0.94090 1.06653 1.20571 0.98088 0.95470 0.94127 1.22021 0.96253 0.97176 0.98003 1.21339 1.04564 0.93302 1.00129 1.18894 0.93626 0.87399 0.94482 1.42249 1.54315 1.07632 1.35541 1.22450 1.00013 0.92810 1.00937 1.67142 1.19755 1.04344 1.25736 0.91242 0.77372 0.84595 0.86765 0.81770 0.81719 0.75855 0.76229 0.82964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.59 13.96 21.66 0.30 -58.29 15 2 C -0.02 -1.10 5.50 84.93 0.47 -0.64 15 3 Si 0.97 40.08 27.74 68.60 1.90 41.98 15 4 H -0.25 -9.81 7.11 99.48 0.71 -9.10 15 5 H -0.28 -11.34 7.11 99.48 0.71 -10.64 15 6 H -0.23 -8.08 6.52 99.48 0.65 -7.44 15 7 C -0.33 -20.07 10.16 84.04 0.85 -19.22 15 8 H 0.05 3.64 7.39 -2.91 -0.02 3.62 15 9 N -0.60 -29.67 5.09 -306.98 -1.56 -31.23 15 10 C 0.46 22.30 7.71 87.66 0.68 22.97 15 11 O -0.61 -36.86 14.92 -3.07 -0.05 -36.91 15 12 C -0.07 -2.35 6.10 29.10 0.18 -2.17 15 13 C 0.06 1.99 5.75 42.57 0.24 2.23 15 14 C -0.11 -2.92 9.70 22.34 0.22 -2.71 15 15 C -0.16 -3.56 10.05 22.59 0.23 -3.33 15 16 C 0.16 3.90 6.79 38.30 0.26 4.16 15 17 N -0.86 -12.25 9.10 -51.11 -0.47 -12.72 15 18 C 0.00 0.05 11.06 84.85 0.94 0.99 15 19 N -0.46 -18.24 9.23 -183.34 -1.69 -19.94 15 20 H 0.28 15.81 8.31 -92.71 -0.77 15.04 15 21 H 0.39 15.95 5.76 -92.71 -0.53 15.41 15 22 H 0.14 3.27 7.87 -2.38 -0.02 3.25 15 23 H 0.11 3.31 8.14 -2.39 -0.02 3.29 15 24 H 0.16 2.94 7.94 -2.91 -0.02 2.91 15 25 H 0.17 2.27 8.06 -2.91 -0.02 2.25 15 26 H 0.41 3.68 8.86 -92.71 -0.82 2.86 15 27 H 0.41 4.62 8.85 -92.71 -0.82 3.80 15 28 H 0.15 4.21 8.06 -2.91 -0.02 4.19 15 Total: -1.00 -86.85 252.82 1.49 -85.37 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -1.01 Total: 29.44 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 4.06 Total: 2.29 kcal Atomic # 7 Polarization: -118.76 SS G_CDS: -3.42 Total: -122.17 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -0.05 Total: -36.91 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 1.90 Total: 41.98 kcal Total: -86.85 1.49 -85.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229615327.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.926 kcal (2) G-P(sol) polarization free energy of solvation -86.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds