Wall clock time and date at job start Mon Mar 30 2020 02:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31127 * 1 3 3 Si 1.86801 * 120.00457 * 2 1 4 4 H 1.48501 * 109.47232 * 274.98926 * 3 2 1 5 5 H 1.48505 * 109.46814 * 34.98646 * 3 2 1 6 6 H 1.48498 * 109.47497 * 154.98392 * 3 2 1 7 7 C 1.39255 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00040 * 186.17915 * 7 2 1 9 9 N 1.36750 * 120.00032 * 6.17447 * 7 2 1 10 10 N 1.39730 * 119.67122 * 352.87189 * 9 7 2 11 11 C 1.30945 * 121.22508 * 180.22453 * 10 9 7 12 12 C 1.40965 * 119.86776 * 359.81406 * 11 10 9 13 13 C 1.38388 * 119.72061 * 0.30537 * 12 11 10 14 14 C 1.34754 * 119.67087 * 173.14301 * 9 7 2 15 15 O 1.22094 * 120.27323 * 359.91280 * 14 9 7 16 16 N 1.38611 * 120.83431 * 180.50867 * 12 11 10 17 17 C 1.46929 * 118.91638 * 346.13094 * 16 12 11 18 18 C 1.53381 * 107.94788 * 45.14322 * 17 16 12 19 19 C 1.50668 * 118.99311 * 179.71196 * 11 10 9 20 20 H 0.97007 * 119.99886 * 359.97438 * 1 2 3 21 21 H 1.07996 * 120.45492 * 179.78976 * 13 12 11 22 22 H 0.96991 * 120.53763 * 166.10691 * 16 12 11 23 23 H 1.09004 * 109.76700 * 285.53077 * 17 16 12 24 24 H 1.09000 * 109.80484 * 164.78224 * 17 16 12 25 25 H 1.08999 * 109.55856 * 176.50860 * 18 17 16 26 26 H 1.09003 * 109.64405 * 56.24593 * 18 17 16 27 27 H 1.09001 * 109.32554 * 279.79919 * 19 11 10 28 28 H 1.08999 * 109.32642 * 39.43992 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3113 0.0000 0.0000 3 14 2.2454 1.6177 0.0000 4 1 2.3875 2.1073 -1.3948 5 1 1.4995 2.6199 0.8028 6 1 3.5916 1.4120 0.5920 7 6 2.0075 -1.2060 0.0005 8 1 3.0828 -1.2087 0.1012 9 7 1.3296 -2.3869 -0.1263 10 7 -0.0675 -2.3881 -0.1057 11 6 -0.7471 -3.5015 -0.2203 12 6 -0.0668 -4.7268 -0.3716 13 6 1.3168 -4.7454 -0.3916 14 6 2.0158 -3.5384 -0.2644 15 8 3.2366 -3.5296 -0.2780 16 7 -0.7662 -5.9160 -0.5051 17 6 -2.1997 -5.9372 -0.1831 18 6 -2.8459 -4.7017 -0.8222 19 6 -2.2523 -3.4453 -0.1851 20 1 -0.4850 0.8401 0.0004 21 1 1.8501 -5.6778 -0.5035 22 1 -0.3168 -6.7210 -0.8064 23 1 -2.3351 -5.9064 0.8981 24 1 -2.6554 -6.8417 -0.5860 25 1 -3.9223 -4.7235 -0.6518 26 1 -2.6462 -4.6966 -1.8938 27 1 -2.5865 -3.3734 0.8500 28 1 -2.5936 -2.5688 -0.7359 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232372227.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:28 Heat of formation + Delta-G solvation = 36.659821 kcal Electronic energy + Delta-G solvation = -15023.333763 eV Core-core repulsion = 12461.748338 eV Total energy + Delta-G solvation = -2561.585425 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68079 -37.60951 -35.11891 -33.44918 -32.63980 -31.06603 -28.51349 -26.75126 -24.38896 -22.56560 -22.31715 -19.71287 -18.45518 -17.03588 -16.23173 -15.31482 -14.89164 -14.40054 -14.32851 -13.76728 -13.68562 -13.02078 -12.81484 -12.46255 -11.90277 -11.71940 -11.38397 -11.08128 -10.77933 -10.60169 -10.52502 -10.47042 -10.17342 -9.31037 -9.02329 -8.23155 -7.78410 -6.94903 -6.57812 -4.15269 2.04349 3.05724 3.09569 3.15305 3.18604 3.76299 3.97703 4.21175 4.55467 5.12967 5.17507 5.33270 5.40699 5.66983 5.75546 5.82287 6.05042 6.14728 6.31638 6.50296 6.58581 6.73988 7.02425 7.16167 7.47000 7.80846 7.91477 8.19377 8.36003 8.78550 9.49933 9.82441 10.29052 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.038276 B = 0.010095 C = 0.008088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.353678 B = 2772.943972 C = 3461.298550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.033 3.967 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.271 4.271 8 H 0.131 0.869 9 N -0.204 5.204 10 N -0.151 5.151 11 C -0.048 4.048 12 C 0.205 3.795 13 C -0.331 4.331 14 C 0.450 3.550 15 O -0.611 6.611 16 N -0.746 5.746 17 C 0.125 3.875 18 C -0.135 4.135 19 C -0.030 4.030 20 H 0.274 0.726 21 H 0.125 0.875 22 H 0.396 0.604 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.247 -4.983 -0.596 9.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.183 4.183 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.408 4.408 8 H 0.149 0.851 9 N -0.006 5.006 10 N 0.018 4.982 11 C -0.209 4.209 12 C 0.095 3.905 13 C -0.366 4.366 14 C 0.258 3.742 15 O -0.500 6.500 16 N -0.380 5.380 17 C 0.000 4.000 18 C -0.174 4.174 19 C -0.070 4.070 20 H 0.085 0.915 21 H 0.143 0.857 22 H 0.230 0.770 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.108 -3.970 -0.444 9.039 hybrid contribution 0.620 -0.552 -0.248 0.866 sum -7.488 -4.521 -0.692 8.774 Atomic orbital electron populations 1.70212 1.06313 1.28010 1.34224 1.25763 0.95753 1.00491 0.96286 0.85726 0.79825 0.79331 0.78986 1.19536 1.20048 1.18429 1.20485 0.93870 0.81029 1.45386 0.85111 1.45965 1.02163 1.08032 1.44467 1.76395 0.88929 1.20821 1.12020 1.21624 0.96425 0.88388 1.14461 1.18349 0.90876 0.86234 0.95079 1.21373 0.91605 0.98450 1.25123 1.16912 0.88416 0.84080 0.84839 1.90748 1.12817 1.86394 1.60015 1.44253 1.08448 1.09381 1.75871 1.21448 0.81438 0.97974 0.99128 1.21899 0.99440 0.95255 1.00763 1.19753 0.88522 0.97739 1.00952 0.91465 0.85697 0.77017 0.92751 0.91005 0.90756 0.91428 0.91488 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.71 11.31 55.51 0.63 -19.08 15 2 C 0.03 0.85 5.49 -17.47 -0.10 0.76 15 3 Si 0.94 19.26 29.56 -169.99 -5.02 14.23 15 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 15 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 15 7 C -0.27 -7.65 9.61 -14.98 -0.14 -7.80 15 8 H 0.13 3.71 7.17 -52.48 -0.38 3.33 15 9 N -0.20 -5.87 3.62 -13.93 -0.05 -5.92 15 10 N -0.15 -4.02 8.71 33.90 0.30 -3.72 15 11 C -0.05 -1.08 6.78 -81.95 -0.56 -1.63 15 12 C 0.20 4.39 6.49 -83.71 -0.54 3.84 15 13 C -0.33 -8.06 9.88 -38.84 -0.38 -8.44 15 14 C 0.45 12.92 7.42 -15.59 -0.12 12.80 15 15 O -0.61 -19.02 16.69 4.83 0.08 -18.94 15 16 N -0.75 -11.98 5.75 -58.00 -0.33 -12.32 15 17 C 0.13 1.58 7.09 -3.61 -0.03 1.56 15 18 C -0.13 -1.78 6.10 -26.60 -0.16 -1.94 15 19 C -0.03 -0.53 6.02 -27.97 -0.17 -0.70 15 20 H 0.27 6.46 8.30 -40.82 -0.34 6.12 15 21 H 0.13 2.78 8.06 -52.49 -0.42 2.36 15 22 H 0.40 5.48 8.85 -40.82 -0.36 5.12 15 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 15 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 15 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 26 H 0.07 0.94 8.14 -51.93 -0.42 0.51 15 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 28 H 0.08 1.40 8.14 -51.93 -0.42 0.97 15 LS Contribution 243.04 15.07 3.66 3.66 Total: -1.00 -32.94 243.04 -5.77 -38.71 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -2.83 Total: 4.92 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.19 Total: -1.55 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.54 Total: -41.04 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.08 Total: -18.94 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -32.94 -5.77 -38.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232372227.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.370 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds