Wall clock time and date at job start Mon Mar 30 2020 02:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31127 * 1 3 3 Si 1.86801 * 120.00457 * 2 1 4 4 H 1.48501 * 109.47232 * 274.98926 * 3 2 1 5 5 H 1.48505 * 109.46814 * 34.98646 * 3 2 1 6 6 H 1.48498 * 109.47497 * 154.98392 * 3 2 1 7 7 C 1.39255 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00040 * 186.17915 * 7 2 1 9 9 N 1.36750 * 120.00032 * 6.17447 * 7 2 1 10 10 N 1.39730 * 119.67122 * 352.87189 * 9 7 2 11 11 C 1.30945 * 121.22508 * 180.22453 * 10 9 7 12 12 C 1.40965 * 119.86776 * 359.81406 * 11 10 9 13 13 C 1.38388 * 119.72061 * 0.30537 * 12 11 10 14 14 C 1.34754 * 119.67087 * 173.14301 * 9 7 2 15 15 O 1.22094 * 120.27323 * 359.91280 * 14 9 7 16 16 N 1.38611 * 120.83431 * 180.50867 * 12 11 10 17 17 C 1.46929 * 118.91638 * 346.13094 * 16 12 11 18 18 C 1.53381 * 107.94788 * 45.14322 * 17 16 12 19 19 C 1.50668 * 118.99311 * 179.71196 * 11 10 9 20 20 H 0.97007 * 119.99886 * 359.97438 * 1 2 3 21 21 H 1.07996 * 120.45492 * 179.78976 * 13 12 11 22 22 H 0.96991 * 120.53763 * 166.10691 * 16 12 11 23 23 H 1.09004 * 109.76700 * 285.53077 * 17 16 12 24 24 H 1.09000 * 109.80484 * 164.78224 * 17 16 12 25 25 H 1.08999 * 109.55856 * 176.50860 * 18 17 16 26 26 H 1.09003 * 109.64405 * 56.24593 * 18 17 16 27 27 H 1.09001 * 109.32554 * 279.79919 * 19 11 10 28 28 H 1.08999 * 109.32642 * 39.43992 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3113 0.0000 0.0000 3 14 2.2454 1.6177 0.0000 4 1 2.3875 2.1073 -1.3948 5 1 1.4995 2.6199 0.8028 6 1 3.5916 1.4120 0.5920 7 6 2.0075 -1.2060 0.0005 8 1 3.0828 -1.2087 0.1012 9 7 1.3296 -2.3869 -0.1263 10 7 -0.0675 -2.3881 -0.1057 11 6 -0.7471 -3.5015 -0.2203 12 6 -0.0668 -4.7268 -0.3716 13 6 1.3168 -4.7454 -0.3916 14 6 2.0158 -3.5384 -0.2644 15 8 3.2366 -3.5296 -0.2780 16 7 -0.7662 -5.9160 -0.5051 17 6 -2.1997 -5.9372 -0.1831 18 6 -2.8459 -4.7017 -0.8222 19 6 -2.2523 -3.4453 -0.1851 20 1 -0.4850 0.8401 0.0004 21 1 1.8501 -5.6778 -0.5035 22 1 -0.3168 -6.7210 -0.8064 23 1 -2.3351 -5.9064 0.8981 24 1 -2.6554 -6.8417 -0.5860 25 1 -3.9223 -4.7235 -0.6518 26 1 -2.6462 -4.6966 -1.8938 27 1 -2.5865 -3.3734 0.8500 28 1 -2.5936 -2.5688 -0.7359 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232372227.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:28 Heat of formation + Delta-G solvation = 11.644468 kcal Electronic energy + Delta-G solvation = -15024.418510 eV Core-core repulsion = 12461.748338 eV Total energy + Delta-G solvation = -2562.670173 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.58941 -39.28834 -37.12919 -35.23944 -34.19519 -32.90161 -30.32975 -28.43228 -26.14054 -24.24332 -23.97268 -21.28913 -20.34369 -18.81387 -17.86678 -17.22799 -16.53883 -16.30049 -16.06751 -15.37220 -15.18027 -14.61493 -14.33477 -14.00914 -13.60464 -13.52104 -13.22672 -12.86025 -12.43696 -12.12582 -12.09028 -11.88643 -11.55790 -11.23796 -10.86324 -10.31646 -9.68748 -8.70694 -8.45839 -6.19626 0.16077 1.19263 1.38445 1.47675 1.54245 1.97791 2.38491 2.57987 2.63698 3.25243 3.75064 3.88912 4.16031 4.20706 4.26688 4.65625 4.81434 4.84202 4.89839 4.99871 5.12021 5.14249 5.38985 5.46155 5.57483 5.86314 6.28430 6.33885 6.81928 6.86552 7.48431 7.79911 8.45259 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.038276 B = 0.010095 C = 0.008088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.353678 B = 2772.943972 C = 3461.298550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.004 3.996 3 Si 1.010 2.990 4 H -0.263 1.263 5 H -0.255 1.255 6 H -0.266 1.266 7 C -0.338 4.338 8 H 0.106 0.894 9 N -0.231 5.231 10 N -0.176 5.176 11 C -0.031 4.031 12 C 0.229 3.771 13 C -0.345 4.345 14 C 0.418 3.582 15 O -0.662 6.662 16 N -0.725 5.725 17 C 0.115 3.885 18 C -0.126 4.126 19 C -0.036 4.036 20 H 0.283 0.717 21 H 0.142 0.858 22 H 0.411 0.589 23 H 0.065 0.935 24 H 0.122 0.878 25 H 0.120 0.880 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.642 -6.602 -0.789 13.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.209 4.209 3 Si 0.829 3.171 4 H -0.188 1.188 5 H -0.179 1.179 6 H -0.190 1.190 7 C -0.472 4.472 8 H 0.124 0.876 9 N -0.033 5.033 10 N -0.003 5.003 11 C -0.198 4.198 12 C 0.115 3.885 13 C -0.380 4.380 14 C 0.227 3.773 15 O -0.556 6.556 16 N -0.356 5.356 17 C -0.008 4.008 18 C -0.165 4.165 19 C -0.075 4.075 20 H 0.094 0.906 21 H 0.160 0.840 22 H 0.248 0.752 23 H 0.083 0.917 24 H 0.140 0.860 25 H 0.138 0.862 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.553 -5.587 -0.635 12.849 hybrid contribution 1.334 -0.427 -0.200 1.415 sum -10.219 -6.014 -0.835 11.887 Atomic orbital electron populations 1.70240 1.07325 1.29303 1.35332 1.26609 0.96725 1.02918 0.94652 0.84721 0.78194 0.74823 0.79369 1.18767 1.17932 1.19024 1.20417 0.93384 0.82484 1.50866 0.87612 1.45939 1.02642 1.08028 1.46741 1.76349 0.88540 1.23270 1.12099 1.22852 0.99126 0.87978 1.09864 1.18324 0.90098 0.88142 0.91969 1.21481 0.93095 0.97548 1.25904 1.17587 0.88395 0.85516 0.85798 1.90667 1.14677 1.87239 1.62990 1.44506 1.10169 1.07760 1.73209 1.21913 0.78597 1.00012 1.00232 1.21941 1.01906 0.92637 0.99998 1.20086 0.84441 1.00422 1.02583 0.90640 0.84003 0.75210 0.91657 0.86020 0.86188 0.91766 0.89826 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -42.44 11.31 21.70 0.25 -42.20 15 2 C 0.00 0.21 5.49 85.04 0.47 0.67 15 3 Si 1.01 41.12 29.56 68.60 2.03 43.14 15 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 15 5 H -0.26 -9.46 7.11 99.48 0.71 -8.75 15 6 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 7 C -0.34 -20.59 9.61 84.17 0.81 -19.78 15 8 H 0.11 6.66 7.17 -2.91 -0.02 6.64 15 9 N -0.23 -14.07 3.62 -316.05 -1.14 -15.22 15 10 N -0.18 -9.58 8.71 -46.67 -0.41 -9.99 15 11 C -0.03 -1.36 6.78 43.35 0.29 -1.06 15 12 C 0.23 9.34 6.49 38.77 0.25 9.59 15 13 C -0.35 -16.91 9.88 22.75 0.22 -16.69 15 14 C 0.42 25.35 7.42 84.69 0.63 25.98 15 15 O -0.66 -44.30 16.69 -5.62 -0.09 -44.39 15 16 N -0.72 -19.78 5.75 -337.41 -1.94 -21.72 15 17 C 0.12 2.14 7.09 86.43 0.61 2.75 15 18 C -0.13 -2.56 6.10 30.68 0.19 -2.38 15 19 C -0.04 -1.12 6.02 29.79 0.18 -0.94 15 20 H 0.28 13.53 8.30 -92.70 -0.77 12.76 15 21 H 0.14 6.27 8.06 -2.91 -0.02 6.24 15 22 H 0.41 9.29 8.85 -92.72 -0.82 8.47 15 23 H 0.07 1.20 8.14 -2.38 -0.02 1.18 15 24 H 0.12 1.27 8.14 -2.39 -0.02 1.25 15 25 H 0.12 1.52 8.14 -2.39 -0.02 1.50 15 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 15 27 H 0.08 2.41 8.14 -2.39 -0.02 2.39 15 28 H 0.07 2.44 8.14 -2.39 -0.02 2.43 15 Total: -1.00 -79.23 243.04 2.71 -76.52 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.37 Total: 15.71 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 3.65 Total: -1.85 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -3.25 Total: -89.12 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -0.09 Total: -44.39 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -79.23 2.71 -76.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232372227.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.166 kcal (2) G-P(sol) polarization free energy of solvation -79.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds