Wall clock time and date at job start Mon Mar 30 2020 03:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31134 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48501 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47020 * 299.99736 * 3 2 1 6 6 H 1.48501 * 109.47227 * 59.99739 * 3 2 1 7 7 C 1.39254 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00015 * 179.97438 * 7 2 1 9 9 N 1.36756 * 119.99683 * 0.02562 * 7 2 1 10 10 N 1.39869 * 119.70771 * 359.97438 * 9 7 2 11 11 C 1.30532 * 120.98755 * 179.97438 * 10 9 7 12 12 C 1.41220 * 120.35589 * 359.97438 * 11 10 9 13 13 N 1.38454 * 120.31221 * 179.97438 * 12 11 10 14 14 C 1.46509 * 119.99810 * 359.97438 * 13 12 11 15 15 C 1.53000 * 117.49680 * 155.00107 * 14 13 12 16 16 C 1.52997 * 117.49724 * 223.62594 * 14 13 12 17 17 C 1.38357 * 119.38302 * 0.26716 * 12 11 10 18 18 C 1.34743 * 119.70398 * 179.97438 * 9 7 2 19 19 O 1.22091 * 120.18608 * 0.02562 * 18 9 7 20 20 H 0.96994 * 119.99567 * 0.02562 * 1 2 3 21 21 H 1.08009 * 119.82053 * 179.97438 * 11 10 9 22 22 H 0.97001 * 120.00431 * 180.02562 * 13 12 11 23 23 H 1.09002 * 115.55964 * 9.30934 * 14 13 12 24 24 H 1.08990 * 117.49990 * 359.97438 * 15 14 13 25 25 H 1.09004 * 117.49237 * 214.97837 * 15 14 13 26 26 H 1.08999 * 117.49685 * 145.02315 * 16 14 13 27 27 H 1.08997 * 117.50044 * 359.97438 * 16 14 13 28 28 H 1.07999 * 120.47326 * 179.74628 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3113 0.0000 0.0000 3 14 2.2453 1.6178 0.0000 4 1 3.7053 1.3465 -0.0006 5 1 1.8866 2.3964 -1.2125 6 1 1.8865 2.3965 1.2125 7 6 2.0077 -1.2059 0.0005 8 1 3.0876 -1.2059 0.0001 9 7 1.3239 -2.3903 0.0005 10 7 -0.0748 -2.3831 0.0005 11 6 -0.7526 -3.4987 0.0000 12 6 -0.0817 -4.7414 -0.0011 13 7 -0.8015 -5.9241 -0.0011 14 6 -2.2662 -5.8902 0.0007 15 6 -3.0015 -7.1031 -0.5729 16 6 -2.9941 -6.8566 0.9372 17 6 1.3016 -4.7660 0.0040 18 6 2.0036 -3.5537 0.0005 19 8 3.2245 -3.5514 0.0010 20 1 -0.4849 0.8400 -0.0004 21 1 -1.8323 -3.4712 0.0005 22 1 -0.3361 -6.7752 -0.0014 23 1 -2.7141 -4.9090 -0.1572 24 1 -2.3957 -7.9260 -0.9518 25 1 -3.9333 -6.9199 -1.1081 26 1 -3.9209 -6.5113 1.3953 27 1 -2.3833 -7.5179 1.5517 28 1 1.8327 -5.7064 0.0074 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232377622.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:20 Heat of formation + Delta-G solvation = 72.129076 kcal Electronic energy + Delta-G solvation = -14500.614433 eV Core-core repulsion = 11940.567070 eV Total energy + Delta-G solvation = -2560.047363 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.52641 -37.89041 -35.56297 -34.57394 -32.69614 -30.47864 -28.98801 -25.51256 -23.47767 -22.37335 -22.27630 -20.56882 -18.58384 -16.87976 -16.76656 -15.68727 -14.88812 -14.83674 -14.37522 -14.28282 -13.63369 -12.97468 -12.53596 -12.37653 -11.81007 -11.58350 -11.52982 -11.39164 -10.95955 -10.90420 -10.48654 -10.43150 -10.11098 -9.31138 -9.09547 -8.26833 -7.89600 -6.97610 -6.59346 -4.17560 1.99878 3.04575 3.08840 3.16382 3.18560 3.67010 3.76402 3.95161 4.23612 4.56443 4.84995 4.98146 5.01312 5.31270 5.57815 5.59788 5.81107 5.91270 5.93400 6.06186 6.21775 6.73373 6.95923 7.12537 7.40972 7.76955 7.86273 8.09635 8.31115 8.76615 9.46204 9.79007 10.27606 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.045814 B = 0.007470 C = 0.006540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.014890 B = 3747.432623 C = 4280.337022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.032 3.968 3 Si 0.937 3.063 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.269 4.269 8 H 0.132 0.868 9 N -0.207 5.207 10 N -0.149 5.149 11 C -0.077 4.077 12 C 0.198 3.802 13 N -0.709 5.709 14 C 0.098 3.902 15 C -0.199 4.199 16 C -0.204 4.204 17 C -0.328 4.328 18 C 0.452 3.548 19 O -0.610 6.610 20 H 0.275 0.725 21 H 0.159 0.841 22 H 0.395 0.605 23 H 0.132 0.868 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.878 -6.274 0.036 10.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.184 4.184 3 Si 0.761 3.239 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.406 4.406 8 H 0.150 0.850 9 N -0.010 5.010 10 N 0.022 4.978 11 C -0.258 4.258 12 C 0.088 3.912 13 N -0.339 5.339 14 C -0.010 4.010 15 C -0.238 4.238 16 C -0.244 4.244 17 C -0.363 4.363 18 C 0.259 3.741 19 O -0.499 6.499 20 H 0.086 0.914 21 H 0.175 0.825 22 H 0.230 0.770 23 H 0.149 0.851 24 H 0.111 0.889 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.710 -5.213 0.031 9.307 hybrid contribution 0.393 -0.743 0.019 0.841 sum -7.317 -5.957 0.050 9.435 Atomic orbital electron populations 1.70206 1.06317 1.28010 1.34356 1.25768 0.95768 1.00528 0.96312 0.85679 0.80218 0.79554 0.78441 1.18277 1.19814 1.19806 1.20546 0.93533 0.80896 1.45640 0.85016 1.46042 1.02373 1.07520 1.45044 1.76437 0.88847 1.21393 1.11126 1.23241 0.99908 0.87574 1.15092 1.18597 0.91043 0.86357 0.95239 1.43610 1.02833 1.05772 1.81647 1.21503 0.81168 0.95829 1.02452 1.23368 1.02914 1.01151 0.96383 1.23457 1.03194 1.04808 0.92911 1.21295 0.91382 0.98230 1.25395 1.16859 0.88438 0.83972 0.84846 1.90754 1.12824 1.86710 1.59571 0.91447 0.82466 0.77001 0.85088 0.88897 0.88294 0.88391 0.88874 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.62 11.28 55.51 0.63 -18.99 15 2 C 0.03 0.82 5.49 -17.47 -0.10 0.72 15 3 Si 0.94 19.06 29.55 -169.99 -5.02 14.04 15 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 7 C -0.27 -7.52 9.64 -14.98 -0.14 -7.67 15 8 H 0.13 3.70 7.14 -52.49 -0.37 3.32 15 9 N -0.21 -5.84 3.62 -13.93 -0.05 -5.89 15 10 N -0.15 -3.89 8.79 30.86 0.27 -3.62 15 11 C -0.08 -1.68 10.62 -16.97 -0.18 -1.86 15 12 C 0.20 4.06 6.67 -83.70 -0.56 3.50 15 13 N -0.71 -11.10 5.70 -52.00 -0.30 -11.40 15 14 C 0.10 1.26 6.32 -67.93 -0.43 0.83 15 15 C -0.20 -2.03 10.46 -26.73 -0.28 -2.31 15 16 C -0.20 -2.16 10.46 -26.73 -0.28 -2.44 15 17 C -0.33 -7.77 9.89 -38.85 -0.38 -8.15 15 18 C 0.45 12.70 7.42 -15.58 -0.12 12.59 15 19 O -0.61 -18.72 16.67 4.84 0.08 -18.63 15 20 H 0.27 6.41 8.30 -40.82 -0.34 6.07 15 21 H 0.16 2.87 5.92 -52.48 -0.31 2.56 15 22 H 0.40 5.51 8.83 -40.82 -0.36 5.15 15 23 H 0.13 1.66 5.89 -51.93 -0.31 1.35 15 24 H 0.09 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.10 0.87 8.14 -51.93 -0.42 0.45 15 26 H 0.10 0.91 8.14 -51.93 -0.42 0.49 15 27 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 28 H 0.12 2.70 8.06 -52.49 -0.42 2.27 15 LS Contribution 250.59 15.07 3.78 3.78 Total: -1.00 -31.96 250.59 -5.68 -37.64 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -2.60 Total: 7.86 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -2.47 Total: -4.78 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.55 Total: -39.90 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.08 Total: -18.63 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.96 -5.68 -37.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232377622.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.769 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds