Wall clock time and date at job start Mon Mar 30 2020 03:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31134 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48501 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47020 * 299.99736 * 3 2 1 6 6 H 1.48501 * 109.47227 * 59.99739 * 3 2 1 7 7 C 1.39254 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00015 * 179.97438 * 7 2 1 9 9 N 1.36756 * 119.99683 * 0.02562 * 7 2 1 10 10 N 1.39869 * 119.70771 * 359.97438 * 9 7 2 11 11 C 1.30532 * 120.98755 * 179.97438 * 10 9 7 12 12 C 1.41220 * 120.35589 * 359.97438 * 11 10 9 13 13 N 1.38454 * 120.31221 * 179.97438 * 12 11 10 14 14 C 1.46509 * 119.99810 * 359.97438 * 13 12 11 15 15 C 1.53000 * 117.49680 * 155.00107 * 14 13 12 16 16 C 1.52997 * 117.49724 * 223.62594 * 14 13 12 17 17 C 1.38357 * 119.38302 * 0.26716 * 12 11 10 18 18 C 1.34743 * 119.70398 * 179.97438 * 9 7 2 19 19 O 1.22091 * 120.18608 * 0.02562 * 18 9 7 20 20 H 0.96994 * 119.99567 * 0.02562 * 1 2 3 21 21 H 1.08009 * 119.82053 * 179.97438 * 11 10 9 22 22 H 0.97001 * 120.00431 * 180.02562 * 13 12 11 23 23 H 1.09002 * 115.55964 * 9.30934 * 14 13 12 24 24 H 1.08990 * 117.49990 * 359.97438 * 15 14 13 25 25 H 1.09004 * 117.49237 * 214.97837 * 15 14 13 26 26 H 1.08999 * 117.49685 * 145.02315 * 16 14 13 27 27 H 1.08997 * 117.50044 * 359.97438 * 16 14 13 28 28 H 1.07999 * 120.47326 * 179.74628 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3113 0.0000 0.0000 3 14 2.2453 1.6178 0.0000 4 1 3.7053 1.3465 -0.0006 5 1 1.8866 2.3964 -1.2125 6 1 1.8865 2.3965 1.2125 7 6 2.0077 -1.2059 0.0005 8 1 3.0876 -1.2059 0.0001 9 7 1.3239 -2.3903 0.0005 10 7 -0.0748 -2.3831 0.0005 11 6 -0.7526 -3.4987 0.0000 12 6 -0.0817 -4.7414 -0.0011 13 7 -0.8015 -5.9241 -0.0011 14 6 -2.2662 -5.8902 0.0007 15 6 -3.0015 -7.1031 -0.5729 16 6 -2.9941 -6.8566 0.9372 17 6 1.3016 -4.7660 0.0040 18 6 2.0036 -3.5537 0.0005 19 8 3.2245 -3.5514 0.0010 20 1 -0.4849 0.8400 -0.0004 21 1 -1.8323 -3.4712 0.0005 22 1 -0.3361 -6.7752 -0.0014 23 1 -2.7141 -4.9090 -0.1572 24 1 -2.3957 -7.9260 -0.9518 25 1 -3.9333 -6.9199 -1.1081 26 1 -3.9209 -6.5113 1.3953 27 1 -2.3833 -7.5179 1.5517 28 1 1.8327 -5.7064 0.0074 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232377622.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:19 Heat of formation + Delta-G solvation = 49.064875 kcal Electronic energy + Delta-G solvation = -14501.614571 eV Core-core repulsion = 11940.567070 eV Total energy + Delta-G solvation = -2561.047502 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.44505 -39.19241 -37.47006 -36.25396 -34.41658 -32.36399 -30.79241 -27.38078 -25.29776 -23.84308 -23.17060 -22.08839 -20.47238 -18.65659 -18.21866 -17.46924 -16.56443 -16.33843 -16.30876 -15.93260 -15.04879 -14.57073 -14.12842 -13.87914 -13.57612 -13.26971 -13.13079 -12.81170 -12.67321 -12.34201 -12.09014 -11.58560 -11.35854 -11.28058 -10.76305 -10.32751 -9.78162 -8.63403 -8.44352 -6.18667 0.16781 1.23177 1.40806 1.48778 1.57426 1.99110 2.32987 2.40893 2.64363 3.05362 3.32540 3.77516 3.96450 4.01824 4.10362 4.15788 4.48744 4.64824 4.84426 5.05499 5.10254 5.15120 5.29294 5.30762 5.52980 5.87336 6.28514 6.33627 6.71859 6.83638 7.47970 7.79532 8.47046 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.045814 B = 0.007470 C = 0.006540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.014890 B = 3747.432623 C = 4280.337022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.004 3.996 3 Si 1.009 2.991 4 H -0.267 1.267 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.336 4.336 8 H 0.107 0.893 9 N -0.233 5.233 10 N -0.171 5.171 11 C -0.051 4.051 12 C 0.231 3.769 13 N -0.689 5.689 14 C 0.057 3.943 15 C -0.177 4.177 16 C -0.190 4.190 17 C -0.342 4.342 18 C 0.423 3.577 19 O -0.660 6.660 20 H 0.283 0.717 21 H 0.203 0.797 22 H 0.408 0.592 23 H 0.135 0.865 24 H 0.099 0.901 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.095 0.905 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.902 -7.739 0.032 13.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.209 4.209 3 Si 0.828 3.172 4 H -0.192 1.192 5 H -0.183 1.183 6 H -0.183 1.183 7 C -0.469 4.469 8 H 0.125 0.875 9 N -0.036 5.036 10 N 0.004 4.996 11 C -0.238 4.238 12 C 0.117 3.883 13 N -0.316 5.316 14 C -0.049 4.049 15 C -0.215 4.215 16 C -0.228 4.228 17 C -0.377 4.377 18 C 0.231 3.769 19 O -0.553 6.553 20 H 0.094 0.906 21 H 0.219 0.781 22 H 0.244 0.756 23 H 0.153 0.847 24 H 0.118 0.882 25 H 0.137 0.863 26 H 0.133 0.867 27 H 0.113 0.887 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.792 -6.683 0.029 12.693 hybrid contribution 0.970 -0.731 0.023 1.215 sum -9.821 -7.413 0.052 12.305 Atomic orbital electron populations 1.70224 1.07296 1.29302 1.35652 1.26582 0.96712 1.02892 0.94700 0.84685 0.78205 0.75015 0.79269 1.19150 1.18348 1.18346 1.20463 0.92990 0.82311 1.51180 0.87500 1.45987 1.02697 1.07467 1.47442 1.76357 0.88606 1.23794 1.10865 1.24147 1.01760 0.87124 1.10739 1.18475 0.90176 0.87919 0.91737 1.43735 1.04467 1.04496 1.78927 1.21867 0.78996 0.97596 1.06405 1.23465 1.02811 0.98918 0.96349 1.23529 1.03057 1.02877 0.93370 1.21347 0.92801 0.97267 1.26333 1.17521 0.88397 0.85347 0.85585 1.90679 1.14722 1.87501 1.62446 0.90621 0.78118 0.75558 0.84735 0.88220 0.86342 0.86671 0.88683 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.90 11.28 21.70 0.24 -41.66 15 2 C 0.00 0.20 5.49 85.04 0.47 0.67 15 3 Si 1.01 40.46 29.55 68.60 2.03 42.48 15 4 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 5 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 6 H -0.26 -9.70 7.11 99.48 0.71 -9.00 15 7 C -0.34 -20.04 9.64 84.17 0.81 -19.23 15 8 H 0.11 6.61 7.14 -2.91 -0.02 6.59 15 9 N -0.23 -13.75 3.62 -316.05 -1.14 -14.89 15 10 N -0.17 -9.01 8.79 -56.27 -0.49 -9.50 15 11 C -0.05 -2.12 10.62 85.62 0.91 -1.21 15 12 C 0.23 8.97 6.67 38.86 0.26 9.22 15 13 N -0.69 -18.79 5.70 -318.44 -1.81 -20.60 15 14 C 0.06 1.19 6.32 44.99 0.28 1.47 15 15 C -0.18 -2.64 10.46 30.60 0.32 -2.32 15 16 C -0.19 -3.00 10.46 30.60 0.32 -2.68 15 17 C -0.34 -16.14 9.89 22.75 0.22 -15.92 15 18 C 0.42 24.88 7.42 84.69 0.63 25.51 15 19 O -0.66 -43.21 16.67 -5.61 -0.09 -43.30 15 20 H 0.28 13.32 8.30 -92.71 -0.77 12.55 15 21 H 0.20 6.46 5.92 -2.91 -0.02 6.45 15 22 H 0.41 9.66 8.83 -92.71 -0.82 8.84 15 23 H 0.14 2.71 5.89 -2.39 -0.01 2.69 15 24 H 0.10 1.42 8.14 -2.39 -0.02 1.40 15 25 H 0.12 1.39 8.14 -2.38 -0.02 1.37 15 26 H 0.12 1.50 8.14 -2.39 -0.02 1.48 15 27 H 0.09 1.53 8.14 -2.39 -0.02 1.51 15 28 H 0.14 6.01 8.06 -2.91 -0.02 5.99 15 Total: -1.00 -74.60 250.59 3.33 -71.27 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.38 Total: 20.69 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 4.22 Total: -4.48 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -3.21 Total: -86.66 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -0.09 Total: -43.30 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Total: -74.60 3.33 -71.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232377622.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.336 kcal (2) G-P(sol) polarization free energy of solvation -74.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds