Wall clock time and date at job start Mon Mar 30 2020 02:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34772 * 120.00260 * 2 1 4 4 O 1.21741 * 120.00275 * 185.29781 * 3 2 1 5 5 C 1.46159 * 119.99778 * 5.29630 * 3 2 1 6 6 H 1.08003 * 120.00285 * 0.02562 * 5 3 2 7 7 C 1.40131 * 119.99983 * 179.97438 * 5 3 2 8 8 N 1.30642 * 119.99877 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99920 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47008 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46943 * 120.00591 * 9 7 5 12 12 H 1.48493 * 109.47247 * 240.00120 * 9 7 5 13 13 C 1.39518 * 119.99943 * 179.97438 * 2 1 3 14 14 C 1.39099 * 120.05318 * 114.61463 * 13 2 1 15 15 C 1.38069 * 120.02860 * 180.02562 * 14 13 2 16 16 C 1.38262 * 120.13483 * 359.97438 * 15 14 13 17 17 C 1.38829 * 120.11081 * 359.97438 * 16 15 14 18 18 O 1.35896 * 120.01313 * 179.97438 * 17 16 15 19 19 C 1.38563 * 119.97186 * 0.02562 * 17 16 15 20 20 H 1.08995 * 109.47610 * 269.99995 * 1 2 3 21 21 H 1.09002 * 109.46711 * 30.00124 * 1 2 3 22 22 H 1.09002 * 109.47227 * 150.00221 * 1 2 3 23 23 H 0.96995 * 119.99902 * 179.97438 * 8 7 5 24 24 H 1.08001 * 119.98766 * 0.03268 * 14 13 2 25 25 H 1.08000 * 119.93398 * 180.02562 * 15 14 13 26 26 H 1.08006 * 119.94616 * 179.97438 * 16 15 14 27 27 H 0.96697 * 114.00029 * 270.04324 * 18 17 16 28 28 H 1.07999 * 120.07004 * 180.25112 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3524 1.1694 -0.0973 5 6 1.4128 2.4302 0.1168 6 1 0.3363 2.4283 0.2036 7 6 2.1135 3.6437 0.1174 8 7 3.4158 3.6461 0.0130 9 14 1.1854 5.2580 0.2660 10 1 -0.2704 4.9843 0.3697 11 1 1.6406 5.9807 1.4809 12 1 1.4485 6.0925 -0.9338 13 6 2.1626 -1.2083 0.0005 14 6 2.9452 -1.5613 -1.0939 15 6 3.6349 -2.7574 -1.0930 16 6 3.5502 -3.6067 -0.0053 17 6 2.7717 -3.2595 1.0905 18 8 2.6895 -4.0960 2.1583 19 6 2.0776 -2.0602 1.0944 20 1 -0.3634 0.0000 1.0276 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3634 -0.8900 -0.5138 23 1 3.9007 4.4861 0.0130 24 1 3.0135 -0.8995 -1.9446 25 1 4.2424 -3.0298 -1.9434 26 1 4.0907 -4.5418 -0.0080 27 1 1.9701 -4.7394 2.0995 28 1 1.4747 -1.7867 1.9477 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234242250.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:14 Heat of formation + Delta-G solvation = -72.772173 kcal Electronic energy + Delta-G solvation = -14575.087345 eV Core-core repulsion = 11976.463841 eV Total energy + Delta-G solvation = -2598.623504 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.04391 -39.47463 -37.46087 -35.66677 -34.66715 -31.40448 -30.57342 -28.34303 -27.17028 -23.94855 -23.45638 -21.42048 -19.18769 -18.39626 -17.66502 -17.41113 -16.88190 -16.60303 -15.91183 -15.60971 -15.05531 -14.67082 -14.37025 -13.52358 -13.31240 -13.18309 -13.07678 -13.04236 -12.77118 -12.63965 -12.34799 -11.99497 -11.56126 -10.99219 -10.11714 -9.86088 -9.64003 -9.05117 -8.34710 -6.92467 0.31636 0.36430 1.39032 1.39474 1.57905 2.20587 2.37672 2.67365 2.72116 3.32715 3.54980 4.01059 4.20503 4.30313 4.41446 4.56322 4.74305 4.76821 4.94104 4.99137 5.30658 5.37801 5.44451 5.49308 5.73186 5.78420 6.09273 6.52579 6.80662 6.89599 7.25460 8.38176 8.60462 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.049442 B = 0.007343 C = 0.007010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.183924 B = 3812.168024 C = 3993.442506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.614 5.614 3 C 0.534 3.466 4 O -0.619 6.619 5 C -0.563 4.563 6 H 0.098 0.902 7 C 0.027 3.973 8 N -0.818 5.818 9 Si 1.001 2.999 10 H -0.243 1.243 11 H -0.270 1.270 12 H -0.268 1.268 13 C 0.166 3.834 14 C -0.146 4.146 15 C -0.089 4.089 16 C -0.157 4.157 17 C 0.116 3.884 18 O -0.504 6.504 19 C -0.177 4.177 20 H 0.051 0.949 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.276 0.724 24 H 0.098 0.902 25 H 0.155 0.845 26 H 0.160 0.840 27 H 0.411 0.589 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.874 -11.060 -0.334 13.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.346 5.346 3 C 0.342 3.658 4 O -0.505 6.505 5 C -0.599 4.599 6 H 0.116 0.884 7 C -0.188 4.188 8 N -0.448 5.448 9 Si 0.819 3.181 10 H -0.165 1.165 11 H -0.195 1.195 12 H -0.192 1.192 13 C 0.073 3.927 14 C -0.166 4.166 15 C -0.107 4.107 16 C -0.175 4.175 17 C 0.071 3.929 18 O -0.317 6.317 19 C -0.198 4.198 20 H 0.070 0.930 21 H 0.093 0.907 22 H 0.094 0.906 23 H 0.086 0.914 24 H 0.116 0.884 25 H 0.172 0.828 26 H 0.177 0.823 27 H 0.270 0.730 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.630 -10.633 -0.189 12.033 hybrid contribution -0.483 0.670 -0.066 0.828 sum -6.113 -9.964 -0.256 11.692 Atomic orbital electron populations 1.21661 0.78033 1.02900 1.01540 1.45664 1.07439 1.03289 1.78250 1.18823 0.86770 0.83644 0.76530 1.90591 1.16350 1.87091 1.56473 1.21515 0.95485 0.89399 1.53455 0.88421 1.27081 0.95477 1.05079 0.91174 1.70188 1.09815 1.29071 1.35702 0.84927 0.79529 0.75087 0.78517 1.16520 1.19483 1.19246 1.17840 0.94945 0.86751 0.93124 1.21425 0.99818 0.97442 0.97901 1.21167 0.97755 0.92422 0.99390 1.21622 1.01522 1.02023 0.92329 1.18259 0.96803 0.90302 0.87493 1.84770 1.57511 1.49143 1.40245 1.21581 1.03824 0.96869 0.97486 0.93045 0.90684 0.90630 0.91421 0.88403 0.82751 0.82286 0.72970 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.66 9.89 127.77 1.26 4.93 15 2 N -0.61 -29.52 2.92 -659.69 -1.93 -31.45 15 3 C 0.53 31.88 7.47 86.30 0.64 32.52 15 4 O -0.62 -42.56 14.50 -4.48 -0.06 -42.63 15 5 C -0.56 -31.79 8.69 24.79 0.22 -31.57 15 6 H 0.10 4.87 6.15 -2.91 -0.02 4.85 15 7 C 0.03 1.53 5.50 85.33 0.47 2.00 15 8 N -0.82 -50.35 11.82 21.85 0.26 -50.09 15 9 Si 1.00 40.47 29.56 68.60 2.03 42.50 15 10 H -0.24 -8.92 7.11 99.48 0.71 -8.21 15 11 H -0.27 -10.60 7.11 99.48 0.71 -9.89 15 12 H -0.27 -10.41 7.11 99.48 0.71 -9.70 15 13 C 0.17 7.29 4.87 38.29 0.19 7.48 15 14 C -0.15 -6.05 9.20 22.44 0.21 -5.85 15 15 C -0.09 -2.83 10.03 22.24 0.22 -2.61 15 16 C -0.16 -4.45 9.99 22.42 0.22 -4.23 15 17 C 0.12 3.66 6.70 22.49 0.15 3.81 15 18 O -0.50 -12.81 13.50 -92.39 -1.25 -14.06 15 19 C -0.18 -6.70 9.76 22.51 0.22 -6.48 15 20 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15 21 H 0.07 2.75 6.34 -2.39 -0.02 2.73 15 22 H 0.08 2.27 8.05 -2.39 -0.02 2.25 15 23 H 0.28 15.29 8.29 -92.71 -0.77 14.52 15 24 H 0.10 4.44 8.06 -2.91 -0.02 4.42 15 25 H 0.15 3.82 8.06 -2.91 -0.02 3.80 15 26 H 0.16 3.34 8.06 -2.91 -0.02 3.31 15 27 H 0.41 5.51 9.06 -74.06 -0.67 4.84 15 28 H 0.12 4.53 8.06 -2.91 -0.02 4.51 15 Total: -1.00 -79.98 253.99 3.37 -76.61 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.52 Total: 19.12 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 3.80 Total: -0.01 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -1.67 Total: -81.54 kcal Atomic # 8 Polarization: -55.37 SS G_CDS: -1.31 Total: -56.69 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -79.98 3.37 -76.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234242250.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.841 kcal (2) G-P(sol) polarization free energy of solvation -79.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds