Wall clock time and date at job start Mon Mar 30 2020 02:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35665 * 116.99887 * 2 1 4 4 C 1.39391 * 119.60158 * 179.72569 * 3 2 1 5 5 C 1.38338 * 119.34016 * 179.77371 * 4 3 2 6 6 C 1.38763 * 118.57160 * 0.49492 * 5 4 3 7 7 C 1.39376 * 119.16860 * 359.74948 * 6 5 4 8 8 C 1.47521 * 119.70549 * 179.97438 * 7 6 5 9 9 O 1.21209 * 120.00517 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99450 * 180.02562 * 8 7 6 11 11 C 1.50702 * 109.47008 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99829 * 0.02562 * 11 10 8 13 13 C 1.37880 * 120.00074 * 180.02562 * 11 10 8 14 14 N 1.31512 * 119.99734 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99769 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47116 * 60.00171 * 15 13 11 17 17 H 1.48503 * 109.46852 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47366 * 299.99593 * 15 13 11 19 19 N 1.31819 * 119.60318 * 0.02562 * 3 2 1 20 20 H 1.08996 * 109.47352 * 299.99705 * 1 2 3 21 21 H 1.08999 * 109.47144 * 59.99729 * 1 2 3 22 22 H 1.09006 * 109.46808 * 179.97438 * 1 2 3 23 23 H 1.07998 * 120.32993 * 0.02562 * 4 3 2 24 24 H 1.08000 * 120.71517 * 180.22509 * 5 4 3 25 25 H 1.07998 * 120.41112 * 179.77143 * 6 5 4 26 26 H 1.09000 * 109.47403 * 299.99752 * 10 8 7 27 27 H 1.09001 * 109.46965 * 60.00136 * 10 8 7 28 28 H 0.97003 * 119.99716 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4374 1.2721 0.0058 5 6 4.0598 2.5075 0.0010 6 6 3.2700 3.6485 0.0010 7 6 1.8827 3.5144 0.0006 8 6 1.0318 4.7195 0.0012 9 8 1.5396 5.8201 0.0016 10 6 -0.4689 4.5821 0.0012 11 6 -1.0987 5.9512 0.0025 12 1 -0.4746 6.8326 0.0028 13 6 -2.4716 6.0785 0.0033 14 7 -3.2315 5.0051 0.0025 15 14 -3.2521 7.7756 0.0042 16 1 -2.8237 8.5181 -1.2084 17 1 -4.7310 7.6402 0.0044 18 1 -2.8224 8.5175 1.2167 19 7 1.3193 2.3093 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 4.0245 0.3657 0.0099 24 1 5.1372 2.5824 0.0017 25 1 3.7247 4.6281 0.0011 26 1 -0.7840 4.0377 -0.8890 27 1 -0.7838 4.0369 0.8910 28 1 -4.1974 5.0947 0.0027 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234872788.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:58 Heat of formation + Delta-G solvation = -40.168136 kcal Electronic energy + Delta-G solvation = -14300.045168 eV Core-core repulsion = 11702.835481 eV Total energy + Delta-G solvation = -2597.209687 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.49837 -38.52700 -37.22144 -33.00702 -32.47994 -30.65024 -28.98846 -27.16585 -24.94258 -23.02687 -22.51811 -19.66890 -17.86730 -16.61648 -16.24751 -15.88507 -15.86964 -14.91195 -14.58583 -14.15229 -14.10600 -13.31606 -13.21104 -12.83561 -12.20406 -11.97480 -11.58126 -11.20065 -10.95259 -10.82459 -10.57723 -10.04327 -9.82657 -9.81451 -9.23556 -8.55271 -8.41765 -8.38663 -6.02599 -4.03863 0.82902 1.40750 2.98853 3.20228 3.37369 3.39906 3.44763 4.12344 4.23447 4.47672 4.78138 5.06801 5.11664 5.32893 5.34732 5.47653 5.58556 5.60505 5.90628 5.97558 6.16270 6.44850 6.63345 7.29321 7.36381 7.44768 7.86667 7.98291 8.22431 8.56416 9.04418 9.60363 11.09079 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.035997 B = 0.007510 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.659594 B = 3727.375273 C = 4484.587222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.312 6.312 3 C 0.312 3.688 4 C -0.177 4.177 5 C -0.055 4.055 6 C -0.166 4.166 7 C 0.102 3.898 8 C 0.404 3.596 9 O -0.449 6.449 10 C -0.006 4.006 11 C -0.522 4.522 12 H 0.071 0.929 13 C 0.058 3.942 14 N -0.897 5.897 15 Si 0.899 3.101 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.276 1.276 19 N -0.491 5.491 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.093 0.907 23 H 0.141 0.859 24 H 0.143 0.857 25 H 0.145 0.855 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.782 -9.406 0.000 14.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.220 6.220 3 C 0.130 3.870 4 C -0.198 4.198 5 C -0.080 4.080 6 C -0.186 4.186 7 C -0.033 4.033 8 C 0.281 3.719 9 O -0.321 6.321 10 C -0.042 4.042 11 C -0.560 4.560 12 H 0.089 0.911 13 C -0.143 4.143 14 N -0.536 5.536 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 N -0.217 5.217 20 H 0.083 0.917 21 H 0.083 0.917 22 H 0.112 0.888 23 H 0.159 0.841 24 H 0.161 0.839 25 H 0.163 0.837 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.037 -9.174 0.000 13.598 hybrid contribution 0.125 0.775 0.000 0.785 sum 10.162 -8.400 0.000 13.184 Atomic orbital electron populations 1.22913 0.76636 1.02681 1.03530 1.86185 1.23392 1.24338 1.88038 1.19890 0.89290 0.84962 0.92856 1.21223 0.92045 0.99528 1.07008 1.21374 1.00484 0.91109 0.95071 1.22229 0.94027 1.00427 1.01932 1.22216 0.92540 0.92737 0.95808 1.23443 0.93790 0.84834 0.69875 1.90378 1.77688 1.28074 1.35974 1.19394 0.85243 0.99437 1.00174 1.21196 0.91558 0.92273 1.50956 0.91066 1.24986 0.97216 0.97002 0.95092 1.69963 1.04727 1.28203 1.50679 0.86538 0.77714 0.84256 0.78814 1.20141 1.21333 1.20135 1.67407 1.40364 0.98030 1.15948 0.91743 0.91748 0.88846 0.84130 0.83918 0.83675 0.92349 0.92350 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.38 101.05 1.05 1.55 15 2 O -0.31 -4.62 10.48 -18.70 -0.20 -4.82 15 3 C 0.31 4.99 7.49 -17.13 -0.13 4.86 15 4 C -0.18 -2.28 10.05 -39.12 -0.39 -2.67 15 5 C -0.06 -0.67 10.16 -39.35 -0.40 -1.07 15 6 C -0.17 -2.58 9.63 -38.96 -0.38 -2.96 15 7 C 0.10 1.98 6.73 -83.14 -0.56 1.42 15 8 C 0.40 9.35 7.12 -30.53 -0.22 9.14 15 9 O -0.45 -11.03 15.42 5.62 0.09 -10.94 15 10 C -0.01 -0.16 4.94 -29.03 -0.14 -0.30 15 11 C -0.52 -15.17 8.92 -34.44 -0.31 -15.48 15 12 H 0.07 2.10 6.75 -52.49 -0.35 1.75 15 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 14 N -0.90 -26.53 13.29 55.43 0.74 -25.80 15 15 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 15 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 19 N -0.49 -9.24 8.63 -9.95 -0.09 -9.32 15 20 H 0.06 0.93 8.10 -51.93 -0.42 0.51 15 21 H 0.06 0.93 8.10 -51.93 -0.42 0.51 15 22 H 0.09 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.14 1.38 8.06 -52.49 -0.42 0.96 15 24 H 0.14 1.18 8.06 -52.49 -0.42 0.75 15 25 H 0.15 2.13 7.63 -52.49 -0.40 1.73 15 26 H 0.06 1.59 8.14 -51.93 -0.42 1.17 15 27 H 0.06 1.59 8.14 -51.93 -0.42 1.17 15 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 LS Contribution 258.98 15.07 3.90 3.90 Total: -1.00 -31.91 258.98 -4.99 -36.90 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: -2.85 Total: -3.06 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -1.57 Total: -3.94 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.65 Total: -35.12 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.11 Total: -15.76 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.91 -4.99 -36.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234872788.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.265 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds