Wall clock time and date at job start Mon Mar 30 2020 02:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35665 * 116.99887 * 2 1 4 4 C 1.39391 * 119.60158 * 179.72569 * 3 2 1 5 5 C 1.38338 * 119.34016 * 179.77371 * 4 3 2 6 6 C 1.38763 * 118.57160 * 0.49492 * 5 4 3 7 7 C 1.39376 * 119.16860 * 359.74948 * 6 5 4 8 8 C 1.47521 * 119.70549 * 179.97438 * 7 6 5 9 9 O 1.21209 * 120.00517 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99450 * 180.02562 * 8 7 6 11 11 C 1.50702 * 109.47008 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99829 * 0.02562 * 11 10 8 13 13 C 1.37880 * 120.00074 * 180.02562 * 11 10 8 14 14 N 1.31512 * 119.99734 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99769 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47116 * 60.00171 * 15 13 11 17 17 H 1.48503 * 109.46852 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47366 * 299.99593 * 15 13 11 19 19 N 1.31819 * 119.60318 * 0.02562 * 3 2 1 20 20 H 1.08996 * 109.47352 * 299.99705 * 1 2 3 21 21 H 1.08999 * 109.47144 * 59.99729 * 1 2 3 22 22 H 1.09006 * 109.46808 * 179.97438 * 1 2 3 23 23 H 1.07998 * 120.32993 * 0.02562 * 4 3 2 24 24 H 1.08000 * 120.71517 * 180.22509 * 5 4 3 25 25 H 1.07998 * 120.41112 * 179.77143 * 6 5 4 26 26 H 1.09000 * 109.47403 * 299.99752 * 10 8 7 27 27 H 1.09001 * 109.46965 * 60.00136 * 10 8 7 28 28 H 0.97003 * 119.99716 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4374 1.2721 0.0058 5 6 4.0598 2.5075 0.0010 6 6 3.2700 3.6485 0.0010 7 6 1.8827 3.5144 0.0006 8 6 1.0318 4.7195 0.0012 9 8 1.5396 5.8201 0.0016 10 6 -0.4689 4.5821 0.0012 11 6 -1.0987 5.9512 0.0025 12 1 -0.4746 6.8326 0.0028 13 6 -2.4716 6.0785 0.0033 14 7 -3.2315 5.0051 0.0025 15 14 -3.2521 7.7756 0.0042 16 1 -2.8237 8.5181 -1.2084 17 1 -4.7310 7.6402 0.0044 18 1 -2.8224 8.5175 1.2167 19 7 1.3193 2.3093 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 4.0245 0.3657 0.0099 24 1 5.1372 2.5824 0.0017 25 1 3.7247 4.6281 0.0011 26 1 -0.7840 4.0377 -0.8890 27 1 -0.7838 4.0369 0.8910 28 1 -4.1974 5.0947 0.0027 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234872788.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:58 Heat of formation + Delta-G solvation = -63.078977 kcal Electronic energy + Delta-G solvation = -14301.038657 eV Core-core repulsion = 11702.835481 eV Total energy + Delta-G solvation = -2598.203175 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.76943 -40.13985 -38.54863 -35.16303 -33.76654 -31.96223 -31.00851 -28.35072 -26.68413 -24.64279 -23.79897 -21.26587 -19.20009 -18.45583 -17.97874 -17.08293 -17.00797 -16.68057 -16.32691 -15.89845 -15.50954 -14.91503 -14.42375 -14.23298 -14.06073 -13.24745 -13.23382 -12.85277 -12.67887 -12.58695 -12.16597 -12.10461 -11.53014 -11.18277 -10.98040 -10.63876 -10.23929 -9.61969 -8.25093 -6.35814 -0.50582 0.27681 1.38045 1.38796 1.42597 1.50858 2.09346 2.38595 2.78067 2.83769 3.08911 3.51813 3.95256 4.04209 4.24714 4.43367 4.45784 4.48609 4.63207 4.80951 4.95629 5.10161 5.18927 5.26136 5.37880 5.67557 6.01251 6.16539 6.48995 6.75346 6.87501 7.33154 8.86756 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.035997 B = 0.007510 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.659594 B = 3727.375273 C = 4484.587222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.310 6.310 3 C 0.290 3.710 4 C -0.151 4.151 5 C -0.037 4.037 6 C -0.154 4.154 7 C 0.064 3.936 8 C 0.409 3.591 9 O -0.472 6.472 10 C 0.000 4.000 11 C -0.551 4.551 12 H 0.061 0.939 13 C 0.009 3.991 14 N -0.925 5.925 15 Si 0.968 3.032 16 H -0.269 1.269 17 H -0.275 1.275 18 H -0.269 1.269 19 N -0.526 5.526 20 H 0.045 0.955 21 H 0.045 0.955 22 H 0.132 0.868 23 H 0.183 0.817 24 H 0.198 0.802 25 H 0.153 0.847 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.854 -10.160 0.003 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.217 6.217 3 C 0.108 3.892 4 C -0.171 4.171 5 C -0.061 4.061 6 C -0.175 4.175 7 C -0.069 4.069 8 C 0.287 3.713 9 O -0.347 6.347 10 C -0.037 4.037 11 C -0.588 4.588 12 H 0.079 0.921 13 C -0.190 4.190 14 N -0.564 5.564 15 Si 0.792 3.208 16 H -0.194 1.194 17 H -0.200 1.200 18 H -0.194 1.194 19 N -0.253 5.253 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.150 0.850 23 H 0.201 0.799 24 H 0.215 0.785 25 H 0.171 0.829 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.112 -9.936 0.003 15.667 hybrid contribution -0.458 0.868 -0.001 0.981 sum 11.654 -9.068 0.002 14.767 Atomic orbital electron populations 1.22981 0.76324 1.04585 1.01729 1.86196 1.23684 1.23764 1.88091 1.20390 0.90791 0.84405 0.93626 1.21797 0.90613 1.01561 1.03159 1.21940 1.02657 0.89135 0.92404 1.22415 0.92381 1.02418 1.00313 1.21456 0.93497 0.91198 1.00774 1.23123 0.92867 0.86363 0.68965 1.90337 1.77684 1.29279 1.37382 1.19162 0.88459 0.97785 0.98301 1.21470 0.92343 0.93040 1.51966 0.92090 1.25880 0.97565 1.01308 0.94219 1.70072 1.05188 1.30396 1.50739 0.85467 0.77161 0.79105 0.79108 1.19438 1.19992 1.19424 1.67171 1.42180 0.98749 1.17157 0.93569 0.93573 0.85035 0.79922 0.78470 0.82906 0.94447 0.94451 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.04 10.38 113.37 1.18 2.22 15 2 O -0.31 -8.76 10.48 -89.81 -0.94 -9.70 15 3 C 0.29 8.88 7.49 84.97 0.64 9.52 15 4 C -0.15 -3.23 10.05 22.57 0.23 -3.00 15 5 C -0.04 -0.72 10.16 22.42 0.23 -0.49 15 6 C -0.15 -4.51 9.63 22.67 0.22 -4.29 15 7 C 0.06 2.51 6.73 41.69 0.28 2.79 15 8 C 0.41 19.84 7.12 28.14 0.20 20.04 15 9 O -0.47 -24.07 15.42 -2.81 -0.04 -24.11 15 10 C 0.00 -0.01 4.94 29.10 0.14 0.13 15 11 C -0.55 -33.39 8.92 25.60 0.23 -33.16 15 12 H 0.06 3.75 6.75 -2.91 -0.02 3.73 15 13 C 0.01 0.53 5.46 84.66 0.46 1.00 15 14 N -0.92 -56.26 13.29 21.45 0.28 -55.97 15 15 Si 0.97 45.88 29.54 68.60 2.03 47.91 15 16 H -0.27 -12.43 7.11 99.48 0.71 -11.72 15 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 18 H -0.27 -12.42 7.11 99.48 0.71 -11.71 15 19 N -0.53 -20.18 8.63 -298.50 -2.58 -22.75 15 20 H 0.05 1.39 8.10 -2.39 -0.02 1.37 15 21 H 0.05 1.39 8.10 -2.39 -0.02 1.37 15 22 H 0.13 2.44 8.14 -2.38 -0.02 2.42 15 23 H 0.18 2.42 8.06 -2.91 -0.02 2.40 15 24 H 0.20 1.81 8.06 -2.91 -0.02 1.79 15 25 H 0.15 4.19 7.63 -2.91 -0.02 4.17 15 26 H 0.04 2.21 8.14 -2.39 -0.02 2.19 15 27 H 0.04 2.20 8.14 -2.39 -0.02 2.18 15 28 H 0.27 15.18 8.31 -92.71 -0.77 14.40 15 Total: -1.00 -72.69 258.98 3.72 -68.97 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: 1.16 Total: 0.91 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 3.80 Total: -5.25 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -2.29 Total: -78.73 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.98 Total: -33.82 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -72.69 3.72 -68.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234872788.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.895 kcal (2) G-P(sol) polarization free energy of solvation -72.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds