Wall clock time and date at job start Mon Mar 30 2020 03:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31177 * 1 3 3 Si 1.86802 * 120.00060 * 2 1 4 4 H 1.48493 * 109.47223 * 270.00492 * 3 2 1 5 5 H 1.48503 * 109.46685 * 30.00265 * 3 2 1 6 6 H 1.48501 * 109.47072 * 149.99934 * 3 2 1 7 7 C 1.39185 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00485 * 162.89695 * 7 2 1 9 9 N 1.37076 * 119.99556 * 342.89022 * 7 2 1 10 10 C 1.35822 * 120.21484 * 331.09505 * 9 7 2 11 11 N 1.30414 * 121.30874 * 180.44414 * 10 9 7 12 12 C 1.34101 * 121.84228 * 359.97438 * 11 10 9 13 13 C 1.35715 * 119.56800 * 359.65788 * 12 11 10 14 14 C 1.34937 * 120.21041 * 151.37663 * 9 7 2 15 15 O 1.21975 * 120.61272 * 359.70675 * 14 9 7 16 16 C 1.50497 * 122.16842 * 180.78874 * 13 12 11 17 17 C 1.52937 * 109.98017 * 342.96476 * 16 13 12 18 18 N 1.47187 * 108.44076 * 49.85796 * 17 16 13 19 19 C 1.46638 * 110.25648 * 289.51648 * 18 17 16 20 20 H 0.97001 * 119.99701 * 359.97438 * 1 2 3 21 21 H 1.07998 * 119.34242 * 0.42377 * 10 9 7 22 22 H 1.08997 * 109.38586 * 103.12322 * 16 13 12 23 23 H 1.09004 * 109.37977 * 222.81206 * 16 13 12 24 24 H 1.09000 * 109.64197 * 290.17733 * 17 16 13 25 25 H 1.09001 * 109.81905 * 169.64487 * 17 16 13 26 26 H 1.00901 * 111.00006 * 52.93944 * 18 17 16 27 27 H 1.09004 * 109.26531 * 292.19030 * 19 18 17 28 28 H 1.08995 * 109.23997 * 172.70339 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3118 0.0000 0.0000 3 14 2.2458 1.6177 0.0000 4 1 2.4932 2.0465 -1.4000 5 1 1.4432 2.6526 0.7001 6 1 3.5433 1.4402 0.7001 7 6 2.0078 -1.2053 -0.0005 8 1 3.0519 -1.2260 -0.2756 9 7 1.3678 -2.3663 0.3482 10 6 0.3232 -2.3369 1.2157 11 7 -0.2955 -3.4294 1.5688 12 6 0.0655 -4.6312 1.0959 13 6 1.0977 -4.7237 0.2196 14 6 1.7754 -3.5464 -0.1638 15 8 2.7112 -3.5947 -0.9445 16 6 1.5405 -6.0397 -0.3609 17 6 0.9815 -7.1933 0.4731 18 7 -0.4622 -6.9759 0.6600 19 6 -0.6924 -5.8451 1.5647 20 1 -0.4850 0.8401 0.0004 21 1 -0.0014 -1.3901 1.6214 22 1 1.1767 -6.1240 -1.3849 23 1 2.6295 -6.0872 -0.3603 24 1 1.4769 -7.2174 1.4437 25 1 1.1456 -8.1378 -0.0456 26 1 -0.9235 -6.8302 -0.2255 27 1 -0.3582 -6.1128 2.5672 28 1 -1.7578 -5.6164 1.5899 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236409554.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:06 Heat of formation + Delta-G solvation = -2.363939 kcal Electronic energy + Delta-G solvation = -15064.048117 eV Core-core repulsion = 12500.770494 eV Total energy + Delta-G solvation = -2563.277623 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.68022 -37.63045 -36.17026 -34.36941 -31.93103 -30.94471 -29.10694 -26.31937 -24.05464 -23.65564 -21.47480 -20.57086 -18.49528 -17.25116 -16.07671 -15.69767 -15.15006 -14.65506 -14.33718 -14.08101 -13.38169 -13.10237 -12.69860 -12.34210 -12.27022 -12.03048 -11.57101 -11.42449 -11.30959 -10.91513 -10.75614 -10.69982 -9.87110 -9.06745 -8.87442 -8.77148 -8.21009 -7.33434 -7.01846 -4.72163 1.82961 2.89605 2.93821 3.00866 3.05377 3.65315 4.20609 4.38367 4.62101 4.99854 5.06658 5.36382 5.57294 5.66016 5.77242 5.91945 5.98365 6.23003 6.31441 6.42088 6.54623 6.87176 6.91369 7.13891 7.16858 7.48213 7.58843 7.91054 8.29485 8.54067 9.16376 9.38552 9.93331 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.053689 B = 0.008880 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.392390 B = 3152.282376 C = 3557.573968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.048 3.952 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.336 4.336 8 H 0.120 0.880 9 N -0.330 5.330 10 C 0.340 3.660 11 N -0.569 5.569 12 C 0.119 3.881 13 C -0.298 4.298 14 C 0.479 3.521 15 O -0.580 6.580 16 C -0.073 4.073 17 C 0.056 3.944 18 N -0.677 5.677 19 C 0.112 3.888 20 H 0.290 0.710 21 H 0.198 0.802 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.341 0.659 27 H 0.087 0.913 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.443 -4.189 3.040 5.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.137 0.863 9 N -0.026 5.026 10 C 0.060 3.940 11 N -0.295 5.295 12 C -0.011 4.011 13 C -0.308 4.308 14 C 0.283 3.717 15 O -0.464 6.464 16 C -0.113 4.113 17 C -0.074 4.074 18 N -0.305 5.305 19 C -0.018 4.018 20 H 0.101 0.899 21 H 0.214 0.786 22 H 0.077 0.923 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.158 0.842 27 H 0.105 0.895 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.698 -4.578 3.524 6.021 hybrid contribution 1.103 1.720 -1.343 2.445 sum -0.595 -2.857 2.182 3.644 Atomic orbital electron populations 1.69731 1.06678 1.30364 1.40262 1.25770 0.95665 1.01341 0.93595 0.85619 0.79663 0.78385 0.79485 1.19265 1.19670 1.18306 1.20236 0.97278 0.82343 1.46677 0.86271 1.42867 1.23077 1.08998 1.27653 1.24949 0.85445 0.97847 0.85807 1.68170 1.32341 0.97205 1.31786 1.21384 0.92932 0.94052 0.92751 1.20559 1.04658 0.95900 1.09692 1.17157 0.87098 0.83795 0.83658 1.90728 1.31465 1.86366 1.37856 1.20460 1.01367 0.91182 0.98283 1.22097 0.88027 0.97140 1.00131 1.61201 1.11244 1.40099 1.17907 1.20665 0.99667 0.84746 0.96723 0.89892 0.78564 0.92293 0.91116 0.90952 0.90520 0.84237 0.89468 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.32 11.18 55.51 0.62 -19.70 15 2 C 0.05 1.13 5.02 -17.48 -0.09 1.04 15 3 Si 0.95 18.10 29.59 -169.99 -5.03 13.07 15 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 5 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 15 7 C -0.34 -8.86 9.14 -14.86 -0.14 -8.99 15 8 H 0.12 3.20 7.60 -52.49 -0.40 2.81 15 9 N -0.33 -8.75 2.74 -65.70 -0.18 -8.93 15 10 C 0.34 8.25 10.33 -89.73 -0.93 7.33 15 11 N -0.57 -12.94 10.27 -10.51 -0.11 -13.05 15 12 C 0.12 2.53 6.66 -82.55 -0.55 1.98 15 13 C -0.30 -6.85 5.78 -104.52 -0.60 -7.45 15 14 C 0.48 12.95 7.38 -15.08 -0.11 12.84 15 15 O -0.58 -17.07 16.22 4.94 0.08 -16.99 15 16 C -0.07 -1.39 5.49 -28.01 -0.15 -1.54 15 17 C 0.06 0.84 6.64 -3.70 -0.02 0.81 15 18 N -0.68 -10.17 6.96 -115.13 -0.80 -10.98 15 19 C 0.11 1.87 6.59 -5.17 -0.03 1.83 15 20 H 0.29 6.37 8.30 -40.82 -0.34 6.03 15 21 H 0.20 4.63 6.18 -52.49 -0.32 4.31 15 22 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 23 H 0.07 1.40 7.93 -51.93 -0.41 0.99 15 24 H 0.07 1.08 8.06 -51.93 -0.42 0.66 15 25 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 26 H 0.34 4.94 8.75 -39.29 -0.34 4.60 15 27 H 0.09 1.36 8.14 -51.93 -0.42 0.94 15 28 H 0.09 1.40 8.14 -51.93 -0.42 0.98 15 LS Contribution 240.70 15.07 3.63 3.63 Total: -1.00 -29.27 240.70 -7.14 -36.41 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -2.72 Total: 8.70 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -2.63 Total: 7.85 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.47 Total: -52.66 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.08 Total: -16.99 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -29.27 -7.14 -36.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236409554.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.047 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds