Wall clock time and date at job start Mon Mar 30 2020 03:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31177 * 1 3 3 Si 1.86802 * 120.00060 * 2 1 4 4 H 1.48493 * 109.47223 * 270.00492 * 3 2 1 5 5 H 1.48503 * 109.46685 * 30.00265 * 3 2 1 6 6 H 1.48501 * 109.47072 * 149.99934 * 3 2 1 7 7 C 1.39185 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00485 * 162.89695 * 7 2 1 9 9 N 1.37076 * 119.99556 * 342.89022 * 7 2 1 10 10 C 1.35822 * 120.21484 * 331.09505 * 9 7 2 11 11 N 1.30414 * 121.30874 * 180.44414 * 10 9 7 12 12 C 1.34101 * 121.84228 * 359.97438 * 11 10 9 13 13 C 1.35715 * 119.56800 * 359.65788 * 12 11 10 14 14 C 1.34937 * 120.21041 * 151.37663 * 9 7 2 15 15 O 1.21975 * 120.61272 * 359.70675 * 14 9 7 16 16 C 1.50497 * 122.16842 * 180.78874 * 13 12 11 17 17 C 1.52937 * 109.98017 * 342.96476 * 16 13 12 18 18 N 1.47187 * 108.44076 * 49.85796 * 17 16 13 19 19 C 1.46638 * 110.25648 * 289.51648 * 18 17 16 20 20 H 0.97001 * 119.99701 * 359.97438 * 1 2 3 21 21 H 1.07998 * 119.34242 * 0.42377 * 10 9 7 22 22 H 1.08997 * 109.38586 * 103.12322 * 16 13 12 23 23 H 1.09004 * 109.37977 * 222.81206 * 16 13 12 24 24 H 1.09000 * 109.64197 * 290.17733 * 17 16 13 25 25 H 1.09001 * 109.81905 * 169.64487 * 17 16 13 26 26 H 1.00901 * 111.00006 * 52.93944 * 18 17 16 27 27 H 1.09004 * 109.26531 * 292.19030 * 19 18 17 28 28 H 1.08995 * 109.23997 * 172.70339 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3118 0.0000 0.0000 3 14 2.2458 1.6177 0.0000 4 1 2.4932 2.0465 -1.4000 5 1 1.4432 2.6526 0.7001 6 1 3.5433 1.4402 0.7001 7 6 2.0078 -1.2053 -0.0005 8 1 3.0519 -1.2260 -0.2756 9 7 1.3678 -2.3663 0.3482 10 6 0.3232 -2.3369 1.2157 11 7 -0.2955 -3.4294 1.5688 12 6 0.0655 -4.6312 1.0959 13 6 1.0977 -4.7237 0.2196 14 6 1.7754 -3.5464 -0.1638 15 8 2.7112 -3.5947 -0.9445 16 6 1.5405 -6.0397 -0.3609 17 6 0.9815 -7.1933 0.4731 18 7 -0.4622 -6.9759 0.6600 19 6 -0.6924 -5.8451 1.5647 20 1 -0.4850 0.8401 0.0004 21 1 -0.0014 -1.3901 1.6214 22 1 1.1767 -6.1240 -1.3849 23 1 2.6295 -6.0872 -0.3603 24 1 1.4769 -7.2174 1.4437 25 1 1.1456 -8.1378 -0.0456 26 1 -0.9235 -6.8302 -0.2255 27 1 -0.3582 -6.1128 2.5672 28 1 -1.7578 -5.6164 1.5899 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236409554.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:05 Heat of formation + Delta-G solvation = -23.109950 kcal Electronic energy + Delta-G solvation = -15064.947731 eV Core-core repulsion = 12500.770494 eV Total energy + Delta-G solvation = -2564.177237 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.56282 -39.18727 -38.16401 -36.12904 -33.82173 -32.51668 -30.75854 -28.17666 -25.68981 -25.32123 -23.21218 -22.14033 -20.35019 -19.12803 -17.84841 -17.39138 -16.92690 -16.39718 -15.94376 -15.60161 -15.01134 -14.89564 -14.26703 -14.01965 -13.93700 -13.67025 -13.48067 -13.09506 -12.91898 -12.40737 -12.16328 -12.08520 -11.62738 -10.96339 -10.81163 -10.61598 -9.60426 -9.19878 -8.86494 -6.71704 0.01680 1.06398 1.33153 1.38491 1.51664 2.02993 2.37958 2.53109 3.08309 3.28229 3.42948 3.91985 3.98344 4.20267 4.25718 4.38982 4.61624 4.68836 4.87462 4.93197 4.99918 5.05521 5.16616 5.44707 5.61637 5.85840 5.98471 6.28789 6.40398 6.60951 7.25467 7.39109 8.11962 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.053689 B = 0.008880 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.392390 B = 3152.282376 C = 3557.573968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.023 3.977 3 Si 1.017 2.983 4 H -0.268 1.268 5 H -0.249 1.249 6 H -0.260 1.260 7 C -0.383 4.383 8 H 0.099 0.901 9 N -0.340 5.340 10 C 0.332 3.668 11 N -0.562 5.562 12 C 0.122 3.878 13 C -0.309 4.309 14 C 0.445 3.555 15 O -0.625 6.625 16 C -0.071 4.071 17 C 0.067 3.933 18 N -0.663 5.663 19 C 0.119 3.881 20 H 0.303 0.697 21 H 0.201 0.799 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.077 0.923 25 H 0.110 0.890 26 H 0.347 0.653 27 H 0.106 0.894 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.643 -4.655 3.938 6.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.187 4.187 3 Si 0.835 3.165 4 H -0.193 1.193 5 H -0.172 1.172 6 H -0.183 1.183 7 C -0.511 4.511 8 H 0.116 0.884 9 N -0.035 5.035 10 C 0.052 3.948 11 N -0.287 5.287 12 C -0.009 4.009 13 C -0.318 4.318 14 C 0.251 3.749 15 O -0.514 6.514 16 C -0.111 4.111 17 C -0.063 4.063 18 N -0.290 5.290 19 C -0.012 4.012 20 H 0.114 0.886 21 H 0.218 0.782 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.128 0.872 26 H 0.164 0.836 27 H 0.124 0.876 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.951 -5.077 4.447 7.366 hybrid contribution 1.394 1.825 -1.612 2.806 sum -1.557 -3.252 2.835 4.586 Atomic orbital electron populations 1.69737 1.07797 1.32111 1.39286 1.26684 0.96463 1.03750 0.91774 0.84625 0.78454 0.73928 0.79494 1.19266 1.17215 1.18348 1.20326 0.97122 0.83638 1.50044 0.88363 1.43013 1.23490 1.09073 1.27946 1.25127 0.85142 0.98704 0.85801 1.68255 1.31694 0.97522 1.31211 1.22182 0.92330 0.95079 0.91278 1.20955 1.04680 0.96125 1.10027 1.17954 0.87630 0.85251 0.84055 1.90664 1.33528 1.87075 1.40150 1.20567 1.00691 0.90914 0.98915 1.22135 0.87609 0.96552 0.99996 1.61250 1.11068 1.38553 1.18109 1.20846 0.99853 0.82853 0.97664 0.88598 0.78244 0.92392 0.92549 0.90400 0.87181 0.83590 0.87573 0.87532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -41.42 11.18 21.69 0.24 -41.18 15 2 C 0.02 1.10 5.02 85.02 0.43 1.53 15 3 Si 1.02 36.74 29.59 68.60 2.03 38.77 15 4 H -0.27 -9.67 7.11 99.48 0.71 -8.96 15 5 H -0.25 -8.04 7.11 99.48 0.71 -7.33 15 6 H -0.26 -9.34 7.11 99.48 0.71 -8.63 15 7 C -0.38 -21.02 9.14 84.10 0.77 -20.25 15 8 H 0.10 5.64 7.60 -2.91 -0.02 5.61 15 9 N -0.34 -18.65 2.74 -479.80 -1.31 -19.96 15 10 C 0.33 16.35 10.33 180.04 1.86 18.21 15 11 N -0.56 -25.12 10.27 -187.18 -1.92 -27.04 15 12 C 0.12 5.02 6.66 41.59 0.28 5.30 15 13 C -0.31 -14.25 5.78 -19.80 -0.11 -14.36 15 14 C 0.45 25.01 7.38 84.93 0.63 25.64 15 15 O -0.63 -38.86 16.22 -5.23 -0.08 -38.94 15 16 C -0.07 -2.65 5.49 29.76 0.16 -2.48 15 17 C 0.07 1.79 6.64 86.23 0.57 2.37 15 18 N -0.66 -17.46 6.96 -518.17 -3.61 -21.07 15 19 C 0.12 3.53 6.59 85.57 0.56 4.10 15 20 H 0.30 12.96 8.30 -92.71 -0.77 12.19 15 21 H 0.20 9.52 6.18 -2.91 -0.02 9.50 15 22 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 23 H 0.06 2.25 7.93 -2.38 -0.02 2.24 15 24 H 0.08 2.07 8.06 -2.39 -0.02 2.05 15 25 H 0.11 2.32 8.14 -2.39 -0.02 2.30 15 26 H 0.35 8.83 8.75 -89.69 -0.78 8.05 15 27 H 0.11 2.88 8.14 -2.39 -0.02 2.86 15 28 H 0.11 2.90 8.14 -2.39 -0.02 2.89 15 Total: -1.00 -65.38 240.70 0.90 -64.48 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.41 Total: 24.89 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 5.15 Total: 20.04 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -6.60 Total: -109.25 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.08 Total: -38.94 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Total: -65.38 0.90 -64.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236409554.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.369 kcal (2) G-P(sol) polarization free energy of solvation -65.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds