Wall clock time and date at job start Mon Mar 30 2020 02:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21283 * 120.00236 * 2 1 4 4 N 1.34777 * 119.99820 * 179.97438 * 2 1 3 5 5 C 1.37106 * 119.99820 * 174.55723 * 4 2 1 6 6 H 1.07994 * 119.99983 * 5.53040 * 5 4 2 7 7 C 1.38876 * 119.99593 * 185.52030 * 5 4 2 8 8 N 1.31429 * 120.00128 * 6.40544 * 7 5 4 9 9 Si 1.86801 * 119.99562 * 186.40489 * 7 5 4 10 10 H 1.48499 * 109.47444 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47105 * 120.00522 * 9 7 5 12 12 H 1.48497 * 109.47091 * 240.00045 * 9 7 5 13 13 C 1.39860 * 120.00237 * 354.56229 * 4 2 1 14 14 C 1.38858 * 120.10037 * 89.99438 * 13 4 2 15 15 C 1.38123 * 119.97581 * 179.97438 * 14 13 4 16 16 C 1.38347 * 120.18073 * 0.03149 * 15 14 13 17 17 C 1.38227 * 120.20676 * 359.97106 * 16 15 14 18 18 C 1.38568 * 120.01964 * 359.97438 * 17 16 15 19 19 O 1.35921 * 120.09054 * 180.02562 * 18 17 16 20 20 H 1.09000 * 109.47421 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47001 * 300.00259 * 1 2 3 22 22 H 1.09002 * 109.46995 * 59.99554 * 1 2 3 23 23 H 0.97003 * 119.99445 * 179.97438 * 8 7 5 24 24 H 1.07995 * 120.01316 * 0.26239 * 14 13 4 25 25 H 1.07997 * 119.91395 * 180.02562 * 15 14 13 26 26 H 1.08002 * 119.89322 * 179.97438 * 16 15 14 27 27 H 1.08001 * 119.98973 * 180.02562 * 17 16 15 28 28 H 0.96705 * 114.00063 * 90.00194 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5472 -1.1700 -0.1121 6 1 4.0910 -0.2369 -0.1113 7 6 4.2320 -2.3727 -0.2270 8 7 3.5660 -3.4985 -0.3545 9 14 6.0997 -2.3901 -0.2003 10 1 6.6057 -1.0024 -0.0473 11 1 6.5708 -3.2168 0.9399 12 1 6.6076 -2.9653 -1.4717 13 6 1.4862 -2.3757 0.1158 14 6 1.0417 -3.0348 -1.0226 15 6 0.3565 -4.2284 -0.9058 16 6 0.1106 -4.7698 0.3434 17 6 0.5497 -4.1200 1.4817 18 6 1.2389 -2.9227 1.3742 19 8 1.6718 -2.2828 2.4925 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 4.0444 -4.3385 -0.4351 24 1 1.2357 -2.6167 -1.9993 25 1 0.0115 -4.7404 -1.7919 26 1 -0.4260 -5.7031 0.4294 27 1 0.3562 -4.5461 2.4550 28 1 2.5602 -2.5407 2.7743 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238141444.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:05 Heat of formation + Delta-G solvation = -36.850937 kcal Electronic energy + Delta-G solvation = -15442.810707 eV Core-core repulsion = 12845.744865 eV Total energy + Delta-G solvation = -2597.065842 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 4.67 seconds Orbital eigenvalues (eV) -39.61017 -37.63378 -35.67208 -34.59878 -31.88357 -29.37165 -28.91121 -28.19968 -24.62920 -21.99199 -21.60623 -19.13599 -18.05204 -17.10712 -16.05567 -15.15332 -14.85371 -14.57235 -14.18184 -13.72893 -13.67719 -12.96897 -12.56231 -11.92061 -11.77506 -11.54450 -11.30773 -11.16007 -11.07923 -10.88761 -10.46836 -10.35172 -9.80654 -9.32275 -8.65522 -8.02013 -7.92942 -7.63033 -6.10891 -3.94149 2.20697 2.30065 3.09956 3.21607 3.28317 3.78600 4.06506 4.48978 4.78241 5.10152 5.29868 5.69314 5.72293 5.80768 5.97620 6.10857 6.20108 6.40256 6.47601 6.68645 6.82721 7.13340 7.29031 7.47433 7.51144 7.66641 7.98808 8.35808 8.58774 9.07790 9.35848 9.85027 10.65077 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.015999 C = 0.011715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.871958 B = 1749.654078 C = 2389.615346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.463 3.537 3 O -0.586 6.586 4 N -0.419 5.419 5 C -0.306 4.306 6 H 0.108 0.892 7 C 0.024 3.976 8 N -0.874 5.874 9 Si 0.928 3.072 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.221 3.779 14 C -0.067 4.067 15 C -0.126 4.126 16 C -0.131 4.131 17 C -0.144 4.144 18 C 0.094 3.906 19 O -0.499 6.499 20 H 0.067 0.933 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.268 0.732 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.331 -4.544 0.868 7.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.253 3.747 3 O -0.470 6.470 4 N -0.137 5.137 5 C -0.433 4.433 6 H 0.126 0.874 7 C -0.178 4.178 8 N -0.513 5.513 9 Si 0.755 3.245 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.208 1.208 13 C 0.129 3.871 14 C -0.087 4.087 15 C -0.145 4.145 16 C -0.149 4.149 17 C -0.164 4.164 18 C 0.048 3.952 19 O -0.308 6.308 20 H 0.086 0.914 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.080 0.920 24 H 0.128 0.872 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.473 -3.926 0.818 6.785 hybrid contribution 1.587 -0.701 0.011 1.735 sum -3.887 -4.626 0.829 6.099 Atomic orbital electron populations 1.21763 0.94303 1.03109 1.03207 1.20115 0.89290 0.83392 0.81904 1.90522 1.70528 1.30859 1.55125 1.41311 1.06403 1.02389 1.63564 1.19888 0.79978 0.94993 1.48396 0.87389 1.25283 1.00531 0.94936 0.97093 1.69924 1.34669 0.98117 1.48604 0.85810 0.82408 0.78527 0.77767 1.19320 1.20736 1.20779 1.17472 0.90585 0.87360 0.91711 1.20846 0.95923 0.94674 0.97219 1.20683 1.01066 0.96101 0.96653 1.20611 1.02506 0.99462 0.92351 1.20954 1.02281 0.94843 0.98275 1.18513 0.99325 0.91932 0.85457 1.84687 1.36724 1.67071 1.42330 0.91392 0.90392 0.90379 0.91995 0.87214 0.87363 0.87368 0.87085 0.76261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 10.09 36.00 0.36 -2.86 15 2 C 0.46 11.72 7.70 -10.99 -0.08 11.64 15 3 O -0.59 -16.78 16.69 5.56 0.09 -16.69 15 4 N -0.42 -10.78 2.41 -58.88 -0.14 -10.92 15 5 C -0.31 -8.37 9.54 -14.96 -0.14 -8.51 15 6 H 0.11 3.13 7.18 -52.49 -0.38 2.75 15 7 C 0.02 0.61 5.41 -17.49 -0.09 0.51 15 8 N -0.87 -22.01 9.42 55.49 0.52 -21.48 15 9 Si 0.93 20.38 29.56 -169.99 -5.02 15.36 15 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 11 H -0.28 -6.09 7.11 56.52 0.40 -5.68 15 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 13 C 0.22 5.11 1.11 -83.52 -0.09 5.02 15 14 C -0.07 -1.42 8.11 -39.39 -0.32 -1.74 15 15 C -0.13 -2.29 10.04 -39.58 -0.40 -2.69 15 16 C -0.13 -2.27 10.04 -39.55 -0.40 -2.66 15 17 C -0.14 -2.72 9.98 -39.46 -0.39 -3.11 15 18 C 0.09 2.04 6.42 -39.02 -0.25 1.79 15 19 O -0.50 -10.71 13.25 -19.49 -0.26 -10.97 15 20 H 0.07 1.28 6.12 -51.93 -0.32 0.96 15 21 H 0.08 1.42 8.14 -51.93 -0.42 0.99 15 22 H 0.08 1.35 8.14 -51.93 -0.42 0.93 15 23 H 0.27 6.56 8.31 -40.82 -0.34 6.22 15 24 H 0.11 2.36 8.06 -52.49 -0.42 1.94 15 25 H 0.11 1.66 8.06 -52.49 -0.42 1.24 15 26 H 0.11 1.53 8.06 -52.49 -0.42 1.11 15 27 H 0.11 1.83 8.06 -52.49 -0.42 1.41 15 28 H 0.38 7.37 9.06 45.56 0.41 7.78 15 LS Contribution 250.26 15.07 3.77 3.77 Total: -1.00 -30.48 250.26 -4.80 -35.28 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -1.95 Total: 8.28 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.81 Total: -2.63 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.38 Total: -32.41 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.17 Total: -27.66 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.48 -4.80 -35.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238141444.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.569 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.67 seconds