Wall clock time and date at job start Mon Mar 30 2020 02:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21283 * 120.00236 * 2 1 4 4 N 1.34777 * 119.99820 * 179.97438 * 2 1 3 5 5 C 1.37106 * 119.99820 * 174.55723 * 4 2 1 6 6 H 1.07994 * 119.99983 * 5.53040 * 5 4 2 7 7 C 1.38876 * 119.99593 * 185.52030 * 5 4 2 8 8 N 1.31429 * 120.00128 * 6.40544 * 7 5 4 9 9 Si 1.86801 * 119.99562 * 186.40489 * 7 5 4 10 10 H 1.48499 * 109.47444 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47105 * 120.00522 * 9 7 5 12 12 H 1.48497 * 109.47091 * 240.00045 * 9 7 5 13 13 C 1.39860 * 120.00237 * 354.56229 * 4 2 1 14 14 C 1.38858 * 120.10037 * 89.99438 * 13 4 2 15 15 C 1.38123 * 119.97581 * 179.97438 * 14 13 4 16 16 C 1.38347 * 120.18073 * 0.03149 * 15 14 13 17 17 C 1.38227 * 120.20676 * 359.97106 * 16 15 14 18 18 C 1.38568 * 120.01964 * 359.97438 * 17 16 15 19 19 O 1.35921 * 120.09054 * 180.02562 * 18 17 16 20 20 H 1.09000 * 109.47421 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47001 * 300.00259 * 1 2 3 22 22 H 1.09002 * 109.46995 * 59.99554 * 1 2 3 23 23 H 0.97003 * 119.99445 * 179.97438 * 8 7 5 24 24 H 1.07995 * 120.01316 * 0.26239 * 14 13 4 25 25 H 1.07997 * 119.91395 * 180.02562 * 15 14 13 26 26 H 1.08002 * 119.89322 * 179.97438 * 16 15 14 27 27 H 1.08001 * 119.98973 * 180.02562 * 17 16 15 28 28 H 0.96705 * 114.00063 * 90.00194 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5472 -1.1700 -0.1121 6 1 4.0910 -0.2369 -0.1113 7 6 4.2320 -2.3727 -0.2270 8 7 3.5660 -3.4985 -0.3545 9 14 6.0997 -2.3901 -0.2003 10 1 6.6057 -1.0024 -0.0473 11 1 6.5708 -3.2168 0.9399 12 1 6.6076 -2.9653 -1.4717 13 6 1.4862 -2.3757 0.1158 14 6 1.0417 -3.0348 -1.0226 15 6 0.3565 -4.2284 -0.9058 16 6 0.1106 -4.7698 0.3434 17 6 0.5497 -4.1200 1.4817 18 6 1.2389 -2.9227 1.3742 19 8 1.6718 -2.2828 2.4925 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 4.0444 -4.3385 -0.4351 24 1 1.2357 -2.6167 -1.9993 25 1 0.0115 -4.7404 -1.7919 26 1 -0.4260 -5.7031 0.4294 27 1 0.3562 -4.5461 2.4550 28 1 2.5602 -2.5407 2.7743 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238141444.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:58 Heat of formation + Delta-G solvation = -57.834244 kcal Electronic energy + Delta-G solvation = -15443.720612 eV Core-core repulsion = 12845.744865 eV Total energy + Delta-G solvation = -2597.975747 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -41.33911 -39.41473 -37.29409 -36.45864 -33.84165 -30.94495 -30.61202 -29.80914 -26.56161 -23.61623 -23.16360 -20.98742 -19.82614 -18.73366 -17.95045 -16.85731 -16.63599 -16.22836 -15.98644 -15.44032 -15.34694 -14.56042 -14.34273 -13.64189 -13.39656 -13.22752 -12.93092 -12.85646 -12.74825 -12.50189 -12.28608 -12.15562 -11.56962 -11.10274 -10.61413 -9.91055 -9.58957 -9.20690 -7.99903 -5.97818 0.66475 0.76393 1.32302 1.39974 1.52056 1.89099 2.24124 2.95652 2.99277 3.11807 3.73734 4.04603 4.27746 4.39922 4.45024 4.64716 4.75402 4.87806 4.94165 5.11059 5.29401 5.42733 5.65254 5.79687 5.93368 5.96937 6.19322 6.46229 6.95830 7.08700 7.43566 7.93660 8.65865 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.015999 C = 0.011715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.871958 B = 1749.654078 C = 2389.615346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.438 3.562 3 O -0.639 6.639 4 N -0.421 5.421 5 C -0.349 4.349 6 H 0.075 0.925 7 C 0.004 3.996 8 N -0.867 5.867 9 Si 0.987 3.013 10 H -0.282 1.282 11 H -0.268 1.268 12 H -0.274 1.274 13 C 0.191 3.809 14 C -0.084 4.084 15 C -0.118 4.118 16 C -0.117 4.117 17 C -0.142 4.142 18 C 0.072 3.928 19 O -0.510 6.510 20 H 0.076 0.924 21 H 0.092 0.908 22 H 0.100 0.900 23 H 0.272 0.728 24 H 0.095 0.905 25 H 0.142 0.858 26 H 0.152 0.848 27 H 0.137 0.863 28 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.313 -7.280 0.920 9.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.229 3.771 3 O -0.527 6.527 4 N -0.137 5.137 5 C -0.475 4.475 6 H 0.093 0.907 7 C -0.199 4.199 8 N -0.505 5.505 9 Si 0.811 3.189 10 H -0.207 1.207 11 H -0.193 1.193 12 H -0.199 1.199 13 C 0.100 3.900 14 C -0.104 4.104 15 C -0.136 4.136 16 C -0.135 4.135 17 C -0.161 4.161 18 C 0.026 3.974 19 O -0.320 6.320 20 H 0.095 0.905 21 H 0.110 0.890 22 H 0.119 0.881 23 H 0.083 0.917 24 H 0.113 0.887 25 H 0.160 0.840 26 H 0.170 0.830 27 H 0.154 0.846 28 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.494 -6.718 0.871 9.384 hybrid contribution 1.864 0.028 -0.016 1.864 sum -4.630 -6.691 0.855 8.181 Atomic orbital electron populations 1.21685 0.90018 1.04191 1.04939 1.21143 0.91577 0.82806 0.81525 1.90467 1.72034 1.32456 1.57736 1.41439 1.06118 1.03720 1.62426 1.19717 0.81455 0.94541 1.51819 0.90745 1.25875 1.04031 0.94216 0.95736 1.70081 1.35800 0.98113 1.46503 0.84961 0.77725 0.77859 0.78317 1.20673 1.19259 1.19919 1.17722 0.92159 0.87047 0.93088 1.20870 0.97449 0.96052 0.96007 1.21063 0.99363 0.94598 0.98617 1.21106 1.00881 1.00331 0.91151 1.21285 1.01060 0.93529 1.00259 1.18795 1.00588 0.93177 0.84832 1.84662 1.37129 1.67742 1.42458 0.90507 0.88986 0.88142 0.91689 0.88680 0.84021 0.82990 0.84555 0.75779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.84 10.09 71.23 0.72 -5.12 15 2 C 0.44 23.00 7.70 87.66 0.67 23.67 15 3 O -0.64 -38.58 16.69 -3.04 -0.05 -38.63 15 4 N -0.42 -22.34 2.41 -458.57 -1.11 -23.45 15 5 C -0.35 -19.85 9.54 84.02 0.80 -19.05 15 6 H 0.07 4.62 7.18 -2.91 -0.02 4.60 15 7 C 0.00 0.23 5.41 84.91 0.46 0.69 15 8 N -0.87 -42.86 9.42 21.65 0.20 -42.65 15 9 Si 0.99 41.89 29.56 68.60 2.03 43.92 15 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 11 H -0.27 -10.74 7.11 99.48 0.71 -10.04 15 12 H -0.27 -11.25 7.11 99.48 0.71 -10.55 15 13 C 0.19 8.78 1.11 38.29 0.04 8.82 15 14 C -0.08 -3.47 8.11 22.39 0.18 -3.29 15 15 C -0.12 -3.85 10.04 22.27 0.22 -3.63 15 16 C -0.12 -3.48 10.04 22.29 0.22 -3.26 15 17 C -0.14 -4.87 9.98 22.35 0.22 -4.65 15 18 C 0.07 3.03 6.42 22.63 0.15 3.18 15 19 O -0.51 -21.86 13.25 -92.66 -1.23 -23.09 15 20 H 0.08 2.84 6.12 -2.39 -0.01 2.83 15 21 H 0.09 3.30 8.14 -2.39 -0.02 3.28 15 22 H 0.10 3.42 8.14 -2.39 -0.02 3.40 15 23 H 0.27 12.76 8.31 -92.71 -0.77 11.99 15 24 H 0.09 4.11 8.06 -2.91 -0.02 4.09 15 25 H 0.14 3.66 8.06 -2.91 -0.02 3.64 15 26 H 0.15 3.28 8.06 -2.91 -0.02 3.25 15 27 H 0.14 3.93 8.06 -2.91 -0.02 3.91 15 28 H 0.39 15.06 9.06 -74.05 -0.67 14.39 15 Total: -1.00 -67.56 250.26 4.05 -63.51 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.51 Total: 23.02 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 3.69 Total: -2.63 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -0.90 Total: -66.10 kcal Atomic # 8 Polarization: -60.44 SS G_CDS: -1.28 Total: -61.72 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -67.56 4.05 -63.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238141444.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.677 kcal (2) G-P(sol) polarization free energy of solvation -67.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds