Wall clock time and date at job start Mon Mar 30 2020 02:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.46973 * 2 1 4 4 C 1.34797 * 116.99932 * 180.02562 * 3 2 1 5 5 O 1.21535 * 120.00296 * 359.97438 * 4 3 2 6 6 C 1.47299 * 120.00320 * 180.02562 * 4 3 2 7 7 C 1.39351 * 120.71605 * 354.25545 * 6 4 3 8 8 N 1.31706 * 120.79015 * 180.29205 * 7 6 4 9 9 C 1.32150 * 122.51026 * 359.71696 * 8 7 6 10 10 C 1.37761 * 121.35946 * 359.97438 * 9 8 7 11 11 C 1.41000 * 118.99142 * 0.02562 * 10 9 8 12 12 C 1.41044 * 121.10528 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00025 * 146.70835 * 12 11 10 14 14 C 1.40344 * 119.99960 * 326.70646 * 12 11 10 15 15 N 1.30566 * 120.00040 * 338.58857 * 14 12 11 16 16 Si 1.86806 * 119.99899 * 158.58267 * 14 12 11 17 17 H 1.48495 * 109.47201 * 270.00312 * 16 14 12 18 18 H 1.48507 * 109.46916 * 30.00233 * 16 14 12 19 19 H 1.48493 * 109.46969 * 149.99934 * 16 14 12 20 20 H 1.08994 * 109.46775 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46661 * 299.99716 * 1 2 3 22 22 H 1.08997 * 109.47170 * 59.99925 * 1 2 3 23 23 H 1.09003 * 109.47371 * 240.00131 * 2 1 3 24 24 H 1.08999 * 109.47570 * 119.99719 * 2 1 3 25 25 H 1.07992 * 119.60822 * 359.97438 * 7 6 4 26 26 H 1.08003 * 119.31695 * 180.02562 * 9 8 7 27 27 H 1.07996 * 120.50138 * 180.02562 * 10 9 8 28 28 H 0.96999 * 120.00298 * 354.21854 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3503 1.5456 -0.0005 5 8 4.0907 0.5818 -0.0005 6 6 3.9134 2.9068 0.0000 7 6 3.0839 4.0202 -0.1189 8 7 3.5863 5.2377 -0.1243 9 6 4.8823 5.4717 -0.0138 10 6 5.7883 4.4420 0.1150 11 6 5.3159 3.1136 0.1280 12 6 6.2040 2.0256 0.2572 13 1 5.8936 1.1345 0.7826 14 6 7.4912 2.1009 -0.2971 15 7 7.7391 2.9476 -1.2595 16 14 8.8499 0.9897 0.3424 17 1 9.5599 1.6671 1.4569 18 1 8.2599 -0.2822 0.8318 19 1 9.8098 0.7009 -0.7532 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.0169 3.8830 -0.2128 26 1 5.2382 6.4913 -0.0240 27 1 6.8444 4.6492 0.2048 28 1 7.0165 3.4646 -1.6488 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238275788.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:54 Heat of formation + Delta-G solvation = -77.875610 kcal Electronic energy + Delta-G solvation = -14651.578192 eV Core-core repulsion = 12052.733386 eV Total energy + Delta-G solvation = -2598.844806 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 4.79 seconds Orbital eigenvalues (eV) -39.54841 -38.18556 -35.65341 -34.48713 -31.53577 -30.66913 -29.89668 -26.10762 -23.85794 -22.38452 -21.64074 -20.14357 -18.32495 -16.93772 -15.83288 -15.64650 -15.24185 -14.88179 -14.13303 -13.63588 -13.34818 -12.97617 -12.63377 -12.42436 -12.32946 -11.89190 -11.43724 -11.27196 -11.19019 -10.81724 -10.51681 -10.11557 -9.93034 -9.47062 -9.31116 -8.36989 -8.12097 -8.06184 -7.46456 -4.86097 1.89919 2.63017 3.07788 3.21598 3.29308 3.51219 3.71246 3.86469 4.46377 5.17888 5.25984 5.29483 5.46600 5.52538 5.67825 5.99570 6.00803 6.10760 6.26999 6.47662 6.51264 6.91902 6.96917 7.19976 7.35628 7.56614 7.82791 7.93356 8.35734 8.53784 8.91275 9.26918 9.75897 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.024762 B = 0.010747 C = 0.007743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.514860 B = 2604.690394 C = 3615.301932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 O -0.371 6.371 4 C 0.511 3.489 5 O -0.516 6.516 6 C -0.301 4.301 7 C 0.183 3.817 8 N -0.585 5.585 9 C 0.108 3.892 10 C -0.249 4.249 11 C 0.128 3.872 12 C -0.452 4.452 13 H 0.107 0.893 14 C 0.033 3.967 15 N -0.772 5.772 16 Si 1.075 2.925 17 H -0.271 1.271 18 H -0.271 1.271 19 H -0.273 1.273 20 H 0.072 0.928 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.137 0.863 26 H 0.127 0.873 27 H 0.116 0.884 28 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.239 -3.400 1.816 6.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.290 6.290 4 C 0.360 3.640 5 O -0.406 6.406 6 C -0.308 4.308 7 C 0.022 3.978 8 N -0.301 5.301 9 C -0.038 4.038 10 C -0.271 4.271 11 C 0.120 3.880 12 C -0.480 4.480 13 H 0.125 0.875 14 C -0.191 4.191 15 N -0.395 5.395 16 Si 0.897 3.103 17 H -0.197 1.197 18 H -0.195 1.195 19 H -0.198 1.198 20 H 0.091 0.909 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.154 0.846 26 H 0.145 0.855 27 H 0.134 0.866 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.927 -3.250 1.530 5.322 hybrid contribution -1.069 -0.449 0.167 1.171 sum -4.995 -3.699 1.697 6.443 Atomic orbital electron populations 1.21770 0.93510 1.02188 1.03180 1.22757 0.94490 0.81923 1.01892 1.86568 1.25936 1.30524 1.85952 1.21097 0.79016 0.90485 0.73377 1.90739 1.59365 1.42773 1.47746 1.19655 0.95180 0.89407 1.26547 1.22460 0.98375 0.87568 0.89446 1.67484 1.14921 1.23324 1.24340 1.22148 0.89150 0.97919 0.94555 1.22064 0.99911 0.92935 1.12171 1.17659 0.90187 0.92971 0.87149 1.21263 0.97220 1.02326 1.27173 0.87547 1.27436 1.00476 0.97440 0.93758 1.70338 1.39096 1.14757 1.15265 0.83491 0.74115 0.75738 0.76971 1.19680 1.19542 1.19798 0.90940 0.91773 0.91755 0.91999 0.92016 0.84589 0.85509 0.86636 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.29 37.16 0.38 -1.37 15 2 C 0.06 1.02 6.20 37.16 0.23 1.25 15 3 O -0.37 -7.47 9.52 -40.76 -0.39 -7.86 15 4 C 0.51 12.27 7.86 34.41 0.27 12.54 15 5 O -0.52 -13.43 13.55 -19.29 -0.26 -13.70 15 6 C -0.30 -7.53 5.94 -104.22 -0.62 -8.15 15 7 C 0.18 4.21 10.78 -17.19 -0.19 4.02 15 8 N -0.59 -13.65 10.32 -13.05 -0.13 -13.79 15 9 C 0.11 2.44 11.15 -17.59 -0.20 2.24 15 10 C -0.25 -6.07 8.04 -38.71 -0.31 -6.38 15 11 C 0.13 3.37 5.18 -106.21 -0.55 2.82 15 12 C -0.45 -12.00 7.74 -37.73 -0.29 -12.30 15 13 H 0.11 2.94 6.09 -52.48 -0.32 2.62 15 14 C 0.03 0.83 5.04 -17.30 -0.09 0.74 15 15 N -0.77 -19.76 12.59 55.57 0.70 -19.06 15 16 Si 1.07 21.27 29.99 -169.99 -5.10 16.18 15 17 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 18 H -0.27 -5.27 7.11 56.52 0.40 -4.86 15 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 20 H 0.07 0.67 8.14 -51.93 -0.42 0.24 15 21 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.14 2.76 7.63 -52.49 -0.40 2.36 15 26 H 0.13 2.45 8.06 -52.48 -0.42 2.03 15 27 H 0.12 2.79 7.07 -52.49 -0.37 2.42 15 28 H 0.30 7.93 6.74 -40.82 -0.28 7.65 15 LS Contribution 251.79 15.07 3.79 3.79 Total: -1.00 -28.95 251.79 -5.44 -34.39 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -2.70 Total: 4.63 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.36 Total: -4.58 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.57 Total: -32.85 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.65 Total: -21.56 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.10 Total: 16.18 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.95 -5.44 -34.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238275788.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.485 kcal (2) G-P(sol) polarization free energy of solvation -28.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.79 seconds