Wall clock time and date at job start Mon Mar 30 2020 03:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86803 * 119.99921 * 2 1 4 4 H 1.48495 * 109.46858 * 239.99753 * 3 2 1 5 5 H 1.48507 * 109.47016 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47043 * 119.99446 * 3 2 1 7 7 C 1.39911 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00090 * 194.58513 * 7 2 1 9 9 C 1.41322 * 119.99965 * 14.58445 * 7 2 1 10 10 C 1.40779 * 120.21418 * 26.45182 * 9 7 2 11 11 C 1.36552 * 119.77329 * 179.97438 * 10 9 7 12 12 C 1.38961 * 120.21674 * 359.97438 * 11 10 9 13 13 F 1.35103 * 119.77882 * 180.02562 * 12 11 10 14 14 C 1.38915 * 120.44391 * 359.77630 * 12 11 10 15 15 C 1.36589 * 120.21765 * 0.50408 * 14 12 11 16 16 C 1.50700 * 120.11143 * 179.74936 * 15 14 12 17 17 C 1.53933 * 113.73209 * 320.95774 * 16 15 14 18 18 N 1.48304 * 86.05994 * 138.13206 * 17 16 15 19 19 C 1.47957 * 90.75572 * 335.30791 * 18 17 16 20 20 H 0.96994 * 120.00085 * 0.02562 * 1 2 3 21 21 H 1.08000 * 120.11735 * 359.97438 * 10 9 7 22 22 H 1.08000 * 119.89196 * 179.97438 * 11 10 9 23 23 H 1.08000 * 119.89387 * 180.25031 * 14 12 11 24 24 H 1.09002 * 112.93976 * 189.39474 * 16 15 14 25 25 H 1.09004 * 113.76113 * 252.50450 * 17 16 15 26 26 H 1.08992 * 113.76367 * 23.87093 * 17 16 15 27 27 H 1.00896 * 111.00252 * 88.19894 * 18 17 16 28 28 H 1.09000 * 113.76008 * 270.37187 * 19 18 17 29 29 H 1.08999 * 113.75608 * 139.00430 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0963 1.6964 -1.2124 5 1 1.2775 2.7465 -0.0006 6 1 3.0963 1.6965 1.2126 7 6 2.0082 -1.2117 0.0005 8 1 3.0621 -1.2266 0.2361 9 6 1.3357 -2.4160 -0.3071 10 6 0.1887 -2.3984 -1.1232 11 6 -0.4537 -3.5674 -1.4151 12 6 0.0215 -4.7716 -0.9100 13 9 -0.6207 -5.9231 -1.2050 14 6 1.1555 -4.8000 -0.1081 15 6 1.8087 -3.6407 0.2000 16 6 3.0354 -3.6737 1.0747 17 6 2.9406 -4.6785 2.2370 18 7 4.3473 -5.0236 1.9184 19 6 4.1652 -4.5626 0.5243 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1819 -1.4635 -1.5170 22 1 -1.3341 -3.5561 -2.0407 23 1 1.5194 -5.7414 0.2764 24 1 3.3670 -2.6809 1.3790 25 1 2.8117 -4.2103 3.2129 26 1 2.2376 -5.4919 2.0582 27 1 4.9884 -4.4246 2.4165 28 1 3.8195 -5.3423 -0.1544 29 1 5.0140 -4.0019 0.1329 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238556578.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:56 Heat of formation + Delta-G solvation = -0.690559 kcal Electronic energy + Delta-G solvation = -14686.880013 eV Core-core repulsion = 12103.754992 eV Total energy + Delta-G solvation = -2583.125021 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.48310 -39.37147 -36.97072 -33.68576 -30.58174 -29.48093 -26.06367 -25.45763 -24.75227 -21.81590 -20.60346 -18.97507 -17.46217 -16.39872 -15.92135 -15.37254 -14.58371 -14.26156 -14.07403 -13.46634 -13.25155 -12.80836 -12.56168 -12.04358 -11.95578 -11.62662 -11.29920 -11.14453 -11.06046 -10.70463 -10.57683 -10.11051 -9.91637 -9.49953 -9.27621 -8.03080 -7.65300 -7.33998 -6.89830 -4.49577 2.55772 2.74461 2.97920 2.99116 3.06380 3.80536 4.42358 4.51122 5.15630 5.39236 5.67794 5.75839 5.89985 5.99936 6.10273 6.13220 6.18822 6.27616 6.40363 6.59844 6.75283 6.92198 7.04706 7.10253 7.38789 7.56700 7.71004 7.77686 7.89571 8.09465 8.41715 8.70400 8.76718 10.03853 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.021723 B = 0.011924 C = 0.008126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.655663 B = 2347.713014 C = 3444.759403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.112 3.888 10 C -0.141 4.141 11 C -0.128 4.128 12 C -0.048 4.048 13 F -0.175 7.175 14 C -0.107 4.107 15 C -0.169 4.169 16 C -0.086 4.086 17 C 0.017 3.983 18 N -0.667 5.667 19 C 0.020 3.980 20 H 0.283 0.717 21 H 0.127 0.873 22 H 0.099 0.901 23 H 0.102 0.898 24 H 0.099 0.901 25 H 0.065 0.935 26 H 0.094 0.906 27 H 0.329 0.671 28 H 0.093 0.907 29 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.988 -0.871 1.189 4.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.109 3.891 10 C -0.161 4.161 11 C -0.147 4.147 12 C -0.067 4.067 13 F -0.154 7.154 14 C -0.126 4.126 15 C -0.171 4.171 16 C -0.105 4.105 17 C -0.112 4.112 18 N -0.293 5.293 19 C -0.110 4.110 20 H 0.094 0.906 21 H 0.145 0.855 22 H 0.117 0.883 23 H 0.120 0.880 24 H 0.118 0.882 25 H 0.084 0.916 26 H 0.112 0.888 27 H 0.142 0.858 28 H 0.111 0.889 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.828 -1.603 1.187 4.317 hybrid contribution -0.026 1.699 -0.031 1.699 sum 3.802 0.096 1.157 3.975 Atomic orbital electron populations 1.69792 1.07561 1.29608 1.34721 1.25941 0.94807 1.01431 0.92232 0.86329 0.80114 0.80096 0.80036 1.18731 1.20217 1.18958 1.19518 0.96998 0.90636 1.41170 0.90124 1.17535 0.91245 0.91750 0.88535 1.21009 0.98419 0.96369 1.00259 1.20498 1.00267 0.92199 1.01737 1.17326 0.98119 0.81015 1.10280 1.91281 1.81889 1.49023 1.93217 1.20084 0.95254 0.97763 0.99479 1.19030 1.00147 0.92952 1.04948 1.22762 0.94178 0.98999 0.94523 1.23885 0.91232 0.97910 0.98199 1.65192 1.05833 1.53895 1.04391 1.23788 0.97720 0.97511 0.92002 0.90560 0.85506 0.88262 0.88020 0.88249 0.91607 0.88772 0.85760 0.88918 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.34 10.89 55.55 0.61 -18.74 15 2 C 0.07 1.74 5.19 -17.34 -0.09 1.65 15 3 Si 0.91 17.56 29.58 -169.99 -5.03 12.53 15 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 15 5 H -0.28 -5.26 7.11 56.52 0.40 -4.86 15 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 15 7 C -0.45 -11.04 8.25 -37.78 -0.31 -11.35 15 8 H 0.08 1.86 6.50 -52.49 -0.34 1.52 15 9 C 0.11 2.78 5.56 -106.82 -0.59 2.19 15 10 C -0.14 -3.52 8.63 -39.23 -0.34 -3.86 15 11 C -0.13 -3.02 9.96 -39.92 -0.40 -3.41 15 12 C -0.05 -1.12 7.32 -39.06 -0.29 -1.41 15 13 F -0.17 -3.98 17.26 2.25 0.04 -3.94 15 14 C -0.11 -2.38 8.45 -39.93 -0.34 -2.72 15 15 C -0.17 -3.79 5.34 -104.27 -0.56 -4.35 15 16 C -0.09 -1.62 3.84 -90.84 -0.35 -1.97 15 17 C 0.02 0.29 8.29 -2.57 -0.02 0.27 15 18 N -0.67 -10.52 8.56 -116.81 -1.00 -11.52 15 19 C 0.02 0.33 8.36 -2.76 -0.02 0.31 15 20 H 0.28 6.33 8.30 -40.82 -0.34 6.00 15 21 H 0.13 3.22 6.18 -52.49 -0.32 2.90 15 22 H 0.10 2.13 8.06 -52.49 -0.42 1.71 15 23 H 0.10 2.08 6.70 -52.49 -0.35 1.73 15 24 H 0.10 1.94 6.19 -51.93 -0.32 1.62 15 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.09 1.65 6.42 -51.93 -0.33 1.32 15 27 H 0.33 4.53 8.89 -39.29 -0.35 4.18 15 28 H 0.09 1.62 7.63 -51.93 -0.40 1.22 15 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 15 LS Contribution 247.97 15.07 3.74 3.74 Total: -1.00 -25.61 247.97 -7.77 -33.38 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -2.82 Total: 9.21 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -3.31 Total: -24.65 kcal Atomic # 7 Polarization: -29.87 SS G_CDS: -0.40 Total: -30.26 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.04 Total: -3.94 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -25.61 -7.77 -33.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238556578.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.691 kcal (2) G-P(sol) polarization free energy of solvation -25.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds