Wall clock time and date at job start Mon Mar 30 2020 03:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86803 * 119.99921 * 2 1 4 4 H 1.48495 * 109.46858 * 239.99753 * 3 2 1 5 5 H 1.48507 * 109.47016 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47043 * 119.99446 * 3 2 1 7 7 C 1.39911 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00090 * 194.58513 * 7 2 1 9 9 C 1.41322 * 119.99965 * 14.58445 * 7 2 1 10 10 C 1.40779 * 120.21418 * 26.45182 * 9 7 2 11 11 C 1.36552 * 119.77329 * 179.97438 * 10 9 7 12 12 C 1.38961 * 120.21674 * 359.97438 * 11 10 9 13 13 F 1.35103 * 119.77882 * 180.02562 * 12 11 10 14 14 C 1.38915 * 120.44391 * 359.77630 * 12 11 10 15 15 C 1.36589 * 120.21765 * 0.50408 * 14 12 11 16 16 C 1.50700 * 120.11143 * 179.74936 * 15 14 12 17 17 C 1.53933 * 113.73209 * 320.95774 * 16 15 14 18 18 N 1.48304 * 86.05994 * 138.13206 * 17 16 15 19 19 C 1.47957 * 90.75572 * 335.30791 * 18 17 16 20 20 H 0.96994 * 120.00085 * 0.02562 * 1 2 3 21 21 H 1.08000 * 120.11735 * 359.97438 * 10 9 7 22 22 H 1.08000 * 119.89196 * 179.97438 * 11 10 9 23 23 H 1.08000 * 119.89387 * 180.25031 * 14 12 11 24 24 H 1.09002 * 112.93976 * 189.39474 * 16 15 14 25 25 H 1.09004 * 113.76113 * 252.50450 * 17 16 15 26 26 H 1.08992 * 113.76367 * 23.87093 * 17 16 15 27 27 H 1.00896 * 111.00252 * 88.19894 * 18 17 16 28 28 H 1.09000 * 113.76008 * 270.37187 * 19 18 17 29 29 H 1.08999 * 113.75608 * 139.00430 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0963 1.6964 -1.2124 5 1 1.2775 2.7465 -0.0006 6 1 3.0963 1.6965 1.2126 7 6 2.0082 -1.2117 0.0005 8 1 3.0621 -1.2266 0.2361 9 6 1.3357 -2.4160 -0.3071 10 6 0.1887 -2.3984 -1.1232 11 6 -0.4537 -3.5674 -1.4151 12 6 0.0215 -4.7716 -0.9100 13 9 -0.6207 -5.9231 -1.2050 14 6 1.1555 -4.8000 -0.1081 15 6 1.8087 -3.6407 0.2000 16 6 3.0354 -3.6737 1.0747 17 6 2.9406 -4.6785 2.2370 18 7 4.3473 -5.0236 1.9184 19 6 4.1652 -4.5626 0.5243 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1819 -1.4635 -1.5170 22 1 -1.3341 -3.5561 -2.0407 23 1 1.5194 -5.7414 0.2764 24 1 3.3670 -2.6809 1.3790 25 1 2.8117 -4.2103 3.2129 26 1 2.2376 -5.4919 2.0582 27 1 4.9884 -4.4246 2.4165 28 1 3.8195 -5.3423 -0.1544 29 1 5.0140 -4.0019 0.1329 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238556578.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:55 Heat of formation + Delta-G solvation = -15.851540 kcal Electronic energy + Delta-G solvation = -14687.537443 eV Core-core repulsion = 12103.754992 eV Total energy + Delta-G solvation = -2583.782451 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.31306 -40.87256 -38.65373 -35.48023 -32.31042 -31.30350 -27.68620 -26.79443 -26.48449 -23.53017 -22.34851 -20.53348 -19.26991 -18.08714 -17.34425 -17.07779 -16.37325 -16.08947 -15.76515 -15.04633 -14.64107 -14.51252 -14.25906 -13.70748 -13.45887 -13.25214 -12.95701 -12.78156 -12.63216 -12.27716 -12.14449 -11.71997 -11.57749 -11.20642 -11.03803 -9.47648 -9.36053 -9.18694 -8.66326 -6.34853 0.76094 0.93169 1.40596 1.49464 1.52401 2.19118 2.63978 3.19124 3.47089 3.89860 4.02383 4.11312 4.27421 4.35356 4.53622 4.79874 4.80806 4.84578 4.89842 5.07134 5.11379 5.18895 5.29113 5.39468 5.59064 5.78713 5.91740 6.05319 6.26494 6.49649 6.58577 6.87615 6.93632 8.29562 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.021723 B = 0.011924 C = 0.008126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.655663 B = 2347.713014 C = 3444.759403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.475 4.475 8 H 0.089 0.911 9 C 0.084 3.916 10 C -0.165 4.165 11 C -0.134 4.134 12 C -0.063 4.063 13 F -0.172 7.172 14 C -0.107 4.107 15 C -0.167 4.167 16 C -0.094 4.094 17 C 0.024 3.976 18 N -0.659 5.659 19 C 0.028 3.972 20 H 0.289 0.711 21 H 0.114 0.886 22 H 0.113 0.887 23 H 0.121 0.879 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.344 0.656 28 H 0.086 0.914 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.437 -0.696 1.907 5.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.503 4.503 8 H 0.107 0.893 9 C 0.082 3.918 10 C -0.184 4.184 11 C -0.153 4.153 12 C -0.083 4.083 13 F -0.151 7.151 14 C -0.126 4.126 15 C -0.169 4.169 16 C -0.114 4.114 17 C -0.106 4.106 18 N -0.286 5.286 19 C -0.102 4.102 20 H 0.100 0.900 21 H 0.132 0.868 22 H 0.131 0.869 23 H 0.139 0.861 24 H 0.111 0.889 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.159 0.841 28 H 0.105 0.895 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.282 -1.446 1.912 5.800 hybrid contribution -0.499 1.596 -0.243 1.690 sum 4.783 0.150 1.669 5.068 Atomic orbital electron populations 1.69858 1.09058 1.30818 1.35160 1.26784 0.95454 1.04593 0.91279 0.85257 0.78738 0.75682 0.80170 1.18458 1.19709 1.18113 1.19795 0.97476 0.91213 1.41863 0.89340 1.17926 0.91689 0.93148 0.89087 1.20978 0.99569 0.96272 1.01602 1.20644 1.00688 0.92080 1.01916 1.17518 0.98784 0.81055 1.10901 1.91279 1.81903 1.48708 1.93253 1.20286 0.94735 0.98585 0.98951 1.19426 1.00929 0.92139 1.04377 1.22902 0.93506 0.99670 0.95283 1.23826 0.91877 0.96920 0.97998 1.65156 1.05399 1.54209 1.03865 1.23710 0.97223 0.96724 0.92525 0.89988 0.86848 0.86934 0.86101 0.88862 0.90228 0.89301 0.84148 0.89536 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.66 10.89 21.82 0.24 -40.42 15 2 C 0.03 1.60 5.19 85.24 0.44 2.05 15 3 Si 0.98 35.33 29.58 68.60 2.03 37.36 15 4 H -0.26 -9.21 7.11 99.48 0.71 -8.50 15 5 H -0.27 -9.51 7.11 99.48 0.71 -8.81 15 6 H -0.26 -8.88 7.11 99.48 0.71 -8.17 15 7 C -0.47 -23.06 8.25 23.43 0.19 -22.87 15 8 H 0.09 4.02 6.50 -2.91 -0.02 4.00 15 9 C 0.08 4.21 5.56 -21.29 -0.12 4.09 15 10 C -0.16 -8.39 8.63 22.50 0.19 -8.20 15 11 C -0.13 -6.42 9.96 22.05 0.22 -6.20 15 12 C -0.06 -2.94 7.32 22.61 0.17 -2.77 15 13 F -0.17 -7.72 17.26 44.97 0.78 -6.94 15 14 C -0.11 -4.67 8.45 22.05 0.19 -4.49 15 15 C -0.17 -7.40 5.34 -19.64 -0.10 -7.51 15 16 C -0.09 -3.43 3.84 -10.89 -0.04 -3.47 15 17 C 0.02 0.74 8.29 86.34 0.72 1.46 15 18 N -0.66 -18.88 8.56 -523.48 -4.48 -23.36 15 19 C 0.03 0.87 8.36 86.41 0.72 1.60 15 20 H 0.29 13.02 8.30 -92.71 -0.77 12.25 15 21 H 0.11 5.98 6.18 -2.91 -0.02 5.96 15 22 H 0.11 4.90 8.06 -2.91 -0.02 4.87 15 23 H 0.12 4.75 6.70 -2.91 -0.02 4.73 15 24 H 0.09 3.51 6.19 -2.39 -0.01 3.49 15 25 H 0.08 2.29 8.14 -2.38 -0.02 2.27 15 26 H 0.09 2.92 6.42 -2.39 -0.02 2.91 15 27 H 0.34 8.33 8.89 -89.70 -0.80 7.53 15 28 H 0.09 2.83 7.63 -2.39 -0.02 2.81 15 29 H 0.08 2.27 8.14 -2.39 -0.02 2.26 15 Total: -1.00 -53.58 247.97 1.52 -52.05 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.39 Total: 27.62 kcal Atomic # 6 Polarization: -48.88 SS G_CDS: 2.58 Total: -46.30 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -4.25 Total: -63.78 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 0.78 Total: -6.94 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 2.03 Total: 37.36 kcal Total: -53.58 1.52 -52.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238556578.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.202 kcal (2) G-P(sol) polarization free energy of solvation -53.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds